Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

54456296 .. 54456978

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG397300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCAAGGACCGGAATGTCCCGCTGAATCTCAAGGCCGCAGGTCTGCTTGTTCTGTCCATGGGGACGGGTGGGATGGAGGACGAGGCTCTCATAGTGTTTAATGAGCTTCATTTGGGGTTGAAAACTACTCATATTCGCAATGTGATGATTGGGATGTTGCTGAAGATTGGGCGAGTGGATGATGCACTGAAGGTGCTCGACAAAATGCTTCACCCAGAAGCGAAGTTTCGGGTTGATGAATTTACCTGCGATGTTGTGATTGGCTCATTGCTGAGGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAAATTTGGTAAGCACGGTGTGTTTCCAAATAGCACAATACTTACGAAATTGGTCACTGTTTTGTGCAGGAATAGGAAGGTTGGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTGGTGCTGTAGAAGCTGCTCCGTGCAATGCGTTTTTAACAGCTTTGGGAAGAGATGAGTGGAGGAGTAAATGGGGTTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

8.47

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	2 cut(s)	32, 257
AciI	CCGC	2 cut(s)	23, 39
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	242, 335
AcuI	CTGAAG	2 cut(s)	185, 212
AdeI	CACNNNGTG	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	3 cut(s)	109, 470, 497
AluI	AGCT	3 cut(s)	109, 470, 497
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	3, 36
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	242, 335
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	70, 445
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	2 cut(s)	32, 257
BisI	GCNGC	2 cut(s)	39, 471
BlsI	GCNGC	2 cut(s)	40, 472
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	6, 60
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 314, 319, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	3 cut(s)	148, 269, 487
BseDI	CCNNGG	2 cut(s)	6, 60
BseGI	GGATG	4 cut(s)	81, 162, 187, 433
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	3 cut(s)	148, 269, 487
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	292, 310, 532
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	5, 38
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	5, 79
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	5, 79
BsnI	GGCC	2 cut(s)	5, 38
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	2 cut(s)	23, 39
BspANI	GGCC	2 cut(s)	5, 38
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	444
BspMI	ACCTGC	2 cut(s)	32, 257
BsrDI	GCAATG	3 cut(s)	148, 269, 487
BssECI	CCNNGG	2 cut(s)	6, 60
BssT1I	CCWWGG	2 cut(s)	6, 60
Bst4CI	ACNGT	2 cut(s)	350, 391
Bst6I	CTCTTC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	81, 162, 187, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	5, 38
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	81, 162, 187, 433
BtsIMutI	CAGTG	3 cut(s)	188, 310, 387
BveI	ACCTGC	2 cut(s)	32, 257
CciI	TCATGA	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	3 cut(s)	61, 437, 445
CviJI	RGCY	8 cut(s)	5, 38, 89, 109, 267, 470, 497, 537
CviKI_1	RGCY	8 cut(s)	5, 38, 89, 109, 267, 470, 497, 537
DdeI	CTNAG	1 cut(s)	275
DraIII	CACNNNGTG	1 cut(s)	352
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	6, 60
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	185, 212
EcoT14I	CCWWGG	2 cut(s)	6, 60
ErhI	CCWWGG	2 cut(s)	6, 60
FaeI	CATG	3 cut(s)	64, 440, 448
FaiI	YATR	5 cut(s)	62, 95, 135, 438, 446
FaqI	GGGAC	2 cut(s)	5, 79
FatI	CATG	3 cut(s)	60, 436, 444
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	39, 471
FokI	GGATG	4 cut(s)	88, 169, 194, 440
Fsp4HI	GCNGC	2 cut(s)	39, 471
GluI	GCNGC	2 cut(s)	39, 471
HaeIII	GGCC	2 cut(s)	5, 38
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	3 cut(s)	64, 440, 448
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	187, 403
HpyCH4III	ACNGT	2 cut(s)	350, 391
HpyCH4V	TGCA	3 cut(s)	188, 399, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	64, 440, 448
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	5 cut(s)	26, 27, 231, 262, 385
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	385
MboII	GAAGA	4 cut(s)	178, 323, 460, 516
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	242, 315, 335, 380
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	73, 79, 270, 288, 301, 510
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	102, 491
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	60
NlaIII	CATG	3 cut(s)	64, 440, 448
NmuCI	GTSAC	1 cut(s)	385
PagI	TCATGA	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	40, 472
PspPI	GGNCC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	102, 491
SatI	GCNGC	2 cut(s)	39, 471
Sau96I	GGNCC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	46, 111, 198, 251, 414, 472, 499
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	242, 315, 335, 380
SsiI	CCGC	2 cut(s)	23, 39
StyI	CCWWGG	2 cut(s)	6, 60
TaaI	ACNGT	2 cut(s)	350, 391
TaqI	TCGA	2 cut(s)	201, 332
TasI	AATT	4 cut(s)	242, 315, 335, 380
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	102, 491
Tru9I	TTAA	2 cut(s)	102, 491
TscAI	CASTG	3 cut(s)	195, 310, 394
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	101, 255, 461
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	195, 310, 394
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	242, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.