Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

14166604 .. 14168925

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGAACCACCTATCACTCTCAGCCTCAAAGCACCTCCTTAAACCCCAACCCTCCAAAACCCAATCCTCCGTCGTTCTCCTCCTCCTCAATCACCAATTCTCCACCGATTCCGATCCCAATCCCAACCCCAAACCCAGCAAACAACCCCATGAAGATGACTCGCTAGTAACCCAAGTCGTCCAACTCCTCGAATCCGATGAAAAAGACTGGAACTTGGACCAGCTCCGCCACCTCCTCTTCTCCGACTCCGCCGCCGCTCCTTCTCCTCGCTCTCTCTTCCGCATCACTCGCCGCCTCAACACTTCCTCCAAAGCCCTCAAGTTCTTCGACTACGTTTCCGAGAATGTGGCAACCTCACCAGACTCGGCGGCGGCGGCCTCGCTCTCTTCATCATTCCAGGCCGTTCTCGAGCTCGCTAAGCGAGAACCCAACTCGCAAACTAGGCTTTTCGACATGTATAAGATGGCGAAAGAGCGGAACATTCCGGTTAATATGAGCGCCGCTGTTCTGCTAGTTCGATCGCTGGGCTTTGCTGGTATGGTGGATGAGGCGGTCAATGTGTATAACGGTCTGGACCCCGGTTTGAAGAATACCCATCTTCTTAATGGGGTGATTAGTGTGCTGTTGAAATGGGGACGGGTCGATGATGCACTGAAGGTGCTCGACAAAATGTTTGATCCAAATGCAGAGTTCCCGGTTGACAGTGTTACTGCTGATATTGTGCTTTCCTCTTTGCTGAAGAGAGAGCGGCCCGGGAGGAGCGTCAGTGAGGAGGACATTATGGGTTTGGTGCAGAAATTTGGGGAGCATGGTGTGTTTCGTGATAGTTTGAAACTTACGAAATTGATCACGTCGTTGTGTAGGAACAGGAACACTAGTCGGGCTTGGGACGTTTTACATTACATCATTAATTCTGGTGGTGCTGTAGAAGCTGCTTGTTGCAATGCGCTTTTGACTGATTTGGGAAGAGTTAATGATTTTAAGAGGATGAATGAGCTTATGGTAAAGATGAAAGAAATGGGCATCCCTCCCAATGTTGTAACTTTCGGTATTGTCATTAACTATTTGTGCAAGTCTAGGAGGGTGGATGAGGCCTTGGAGTTGTTTCAAAGGATAAGTGGAGGAGGAGAGAAAACTGATGGGATTTGGGCTGAACCCGATGTGATCATTCATTACACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGATTACGTCTGATGGAAAAAATGAGATTGCAAGATGGCTGTGCACCTAATACTGTTACCTACAATAGTTTGATTGACGGTTTCAACAAGGTTGGGGACATCGAGAGGGGTCGTGAGCTCTATGATCAAATGAAGGAGGAAGGTATACCGCCAAGTGTAGTTACTCTCAATACTTTGGTTGATGGTCTCTGTAAACATGGGAGGCTCAACAGCGCACTGGAATTCCTTAATGAAATGCAGAGGGATGGTATAAAAGGCAATGTCACGACGTACACGATGCTAATCACTTCCTTTTGTAATGTAAACAATATTGGCATGGCACTGGAACTGTTTGAGCAAATGTTAAGTTCTGGATGCTCCACAGATGCAAAAGTTTACTACTGCTTGATCTCTGGTTTAAGCCAAGCCGGAAGGATGGATGATGCCAGCATTGTTGTATCAAAGTTGAAGGAGGCCGGGTTCTCCCTGGATGTCATTGCCTTCAATGTTTTGATTAATGGGTTCTGCAAGACAAAAAAACTCGAGAAGGTGCATGAGATGATCCAGGAAATGGAGACAGCTGGAGTAAAGCCTGATAGCATCACATACAACACGCTGATTTCGTATTTGTGCTCAGCTGGGGAACTTACGACTGCTGATAGAGTACTGAGCAAGATGATAAATGAGGGCCTTGTTCCTACGGTTTTCACTTTTGGATCATTGATTCACGCATATTGTTTGAAGGGCGATACATACAAAGCCATGAAGATCTTCAGAGACATGGGTTCTAAGTGGAGTGCTCCTCCCAACACAGTAGTATACAACATCTTAATAGATTCTTTATGCAAGAATAATGAAGTGGACGTCGCACTTTCGTTGATGGATAGTATGAAAGATAAGGGAGTGAGACCTAATACCTTGACATTCAACGCCATGTTCAAAGGTCTTAAGGAGAATAATTTGCTGGAGAAAGCATTTAAATTAATGGATCAAATGATTGAACAGGCTTGTAATCCGGATTATATAACCATGGAGATCCTGAGCGAATGGCTTTCTGCTGTTGGTGAAACTGAAAAGTTGAGAAGGTTTGTGCAAGGATATGAAGTTGCTGCTTCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

774

Amino Acids

85.84

Weight (kDa)

5.88

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	313 - 358	7.4e-09	PPR repeat family
PPR_1	PF12854	340 - 371	1.8e-09	PPR repeat
PPR_2	PF13041	344 - 371	1e-05	PPR repeat family
PPR_1	PF12854	385 - 415	2.9e-06	PPR repeat
PPR_2	PF13041	386 - 435	9.2e-11	PPR repeat family
PPR_3	PF13812	418 - 466	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	418 - 451	8.1e-09	PPR repeat
TPR_24	PF23276	422 - 519	2.5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	422 - 471	3.1e-16	PPR repeat family
PPR	PF01535	425 - 455	1.1e-07	PPR repeat
PPR_long	PF17177	440 - 556	4.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	454 - 486	7.5e-13	PPR repeat
PPR_2	PF13041	457 - 506	5.6e-17	PPR repeat family
PPR	PF01535	460 - 490	6.5e-08	PPR repeat
TPR_24	PF23276	471 - 583	1.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	482 - 526	2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	489 - 520	1e-06	PPR repeat
PPR_2	PF13041	493 - 540	3.6e-10	PPR repeat family
PPR	PF01535	496 - 525	1e-05	PPR repeat
PPR_long	PF17177	508 - 613	8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	531 - 576	2.3e-08	PPR repeat family
TPR_24	PF23276	542 - 659	3.2e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	551 - 608	1.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	563 - 610	4.2e-15	PPR repeat family
PPR_long	PF17177	565 - 661	5e-07	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	566 - 595	7.1e-06	PPR repeat
PPR_3	PF13812	587 - 644	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	594 - 625	3.8e-09	PPR repeat
PPR_2	PF13041	597 - 645	2.1e-13	PPR repeat family
PPR_3	PF13812	620 - 679	8.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	629 - 660	9.5e-09	PPR repeat
PPR_1	PF12854	667 - 697	2.7e-10	PPR repeat
PPR_2	PF13041	668 - 715	3e-17	PPR repeat family
TPR_24	PF23276	670 - 766	6.9e-06	Fungal tetratrico peptide repeats
PPR	PF01535	671 - 701	2.7e-07	PPR repeat
PPR_2	PF13041	708 - 746	2.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2064
AccB7I	CCANNNNNTGG	1 cut(s)	1768
AccBSI	CCGCTC	3 cut(s)	257, 475, 748
AccI	GTMKAC	2 cut(s)	1363, 2016
AccIII	TCCGGA	1 cut(s)	2212
AclWI	GGATC	6 cut(s)	107, 671, 1753, 1921, 2193, 2227
AcsI	RAATTY	2 cut(s)	797, 1439
AcuI	CTGAAG	3 cut(s)	674, 758, 1954
AcyI	GRCGYC	1 cut(s)	2061
AfaI	GTAC	2 cut(s)	1490, 1863
AfiI	CCNNNNNNNGG	1 cut(s)	1768
AflII	CTTAAG	1 cut(s)	2144
AflIII	ACRYGT	1 cut(s)	453
AhlI	ACTAGT	1 cut(s)	875
AjiI	CACGTC	1 cut(s)	852
AjnI	CCWGG	3 cut(s)	396, 1683, 1761
AloI	GAACNNNNNNTCC	2 cut(s)	1661, 1693
AluBI	AGCT	7 cut(s)	223, 412, 932, 997, 1336, 1778, 1835
AluI	AGCT	7 cut(s)	223, 412, 932, 997, 1336, 1778, 1835
Alw21I	GWGCWC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
Alw26I	GTCTC	4 cut(s)	1409, 1766, 1968, 2098
Alw44I	GTGCAC	1 cut(s)	1260
AlwI	GGATC	6 cut(s)	107, 671, 1753, 1921, 2193, 2227
Ama87I	CYCGRG	3 cut(s)	407, 752, 1739
Aor13HI	TCCGGA	1 cut(s)	2212
AoxI	GGCC	6 cut(s)	375, 399, 749, 1092, 1671, 1885
ApaLI	GTGCAC	1 cut(s)	1260
ApeKI	GCWGC	2 cut(s)	932, 2306
ApoI	RAATTY	2 cut(s)	797, 1439
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AseI	ATTAAT	3 cut(s)	909, 1713, 2180
Asp700I	GAANNNNTTC	1 cut(s)	1967
AspLEI	GCGC	3 cut(s)	500, 949, 1433
AspS9I	GGNCC	4 cut(s)	217, 574, 750, 1885
AsuC2I	CCSGG	5 cut(s)	579, 695, 753, 754, 1675
AsuHPI	GGTGA	4 cut(s)	83, 348, 622, 2273
AvaI	CYCGRG	3 cut(s)	407, 752, 1739
AvaII	GGWCC	2 cut(s)	217, 574
BaeGI	GKGCMC	1 cut(s)	1264
BanII	GRGCYC	2 cut(s)	414, 1338
BarI	GAAGNNNNNNTAC	2 cut(s)	1206, 1238
Bbv12I	GWGCWC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
BbvI	GCAGC	2 cut(s)	919, 2293
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	3 cut(s)	398, 1685, 1763
BclI	TGATCA	3 cut(s)	846, 1164, 1342
BcnI	CCSGG	5 cut(s)	579, 695, 753, 754, 1675
BcoDI	GTCTC	4 cut(s)	1409, 1766, 1968, 2098
BcuI	ACTAGT	1 cut(s)	875
BfaI	CTAG	5 cut(s)	164, 441, 512, 876, 1077
BfmI	CTRYAG	1 cut(s)	924
BfoI	RGCGCY	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	2144
BglII	AGATCT	1 cut(s)	1965
BlpI	GCTNAGC	2 cut(s)	417, 1831
BmcAI	AGTACT	1 cut(s)	1863
Bme1390I	CCNGG	8 cut(s)	398, 579, 695, 753, 754, 1675, 1685, 1763
Bme18I	GGWCC	2 cut(s)	217, 574
BmeT110I	CYCGRG	3 cut(s)	407, 752, 1739
BmgBI	CACGTC	1 cut(s)	852
BmgT120I	GGNCC	4 cut(s)	217, 574, 750, 1885
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	8 cut(s)	398, 579, 695, 753, 754, 1675, 1685, 1763
BmsI	GCATC	8 cut(s)	291, 637, 1032, 1485, 1562, 1573, 1630, 1806
BplI	GAGNNNNNCTC	2 cut(s)	1984, 2016
BpmI	CTGGAG	2 cut(s)	1800, 2183
Bpu10I	CCTNAGC	1 cut(s)	2237
Bpu1102I	GCTNAGC	2 cut(s)	417, 1831
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	5 cut(s)	579, 695, 753, 754, 1675
BsaBI	GATNNNNATC	3 cut(s)	111, 117, 1499
BsaHI	GRCGYC	1 cut(s)	2061
BsaI	GGTCTC	2 cut(s)	1409, 2098
BsaJI	CCNNGG	5 cut(s)	577, 752, 1095, 1683, 2226
BsaWI	WCCGGW	2 cut(s)	484, 2212
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 290, 320, 751, 781, 1661, 1691
Bsc4I	CCNNNNNNNGG	1 cut(s)	1768
Bse1I	ACTGG	3 cut(s)	212, 1440, 1545
Bse3DI	GCAATG	3 cut(s)	949, 1483, 1692
Bse8I	GATNNNNATC	3 cut(s)	111, 117, 1499
BseAI	TCCGGA	1 cut(s)	2212
BseBI	CCWGG	3 cut(s)	398, 1685, 1763
BseDI	CCNNGG	5 cut(s)	577, 752, 1095, 1683, 2226
BseGI	GGATG	9 cut(s)	550, 993, 1023, 1093, 1468, 1577, 1638, 1642, 1693
BseJI	GATNNNNATC	3 cut(s)	111, 117, 1499
BseLI	CCNNNNNNNGG	1 cut(s)	1768
BseMI	GCAATG	3 cut(s)	949, 1483, 1692
BseMII	CTCAG	4 cut(s)	33, 1845, 1856, 2228
BseNI	ACTGG	3 cut(s)	212, 1440, 1545
BseSI	GKGCMC	1 cut(s)	1264
BseXI	GCAGC	2 cut(s)	919, 2293
BseYI	CCCAGC	3 cut(s)	134, 523, 1835
BsgI	GTGCAG	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	6 cut(s)	377, 401, 751, 1094, 1673, 1887
BsiEI	CGRYCG	1 cut(s)	521
BsiHKAI	GWGCWC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
BsiHKCI	CYCGRG	3 cut(s)	407, 752, 1739
BsiSI	CCGG	7 cut(s)	485, 579, 695, 753, 1626, 1674, 2213
BslFI	GGGAC	3 cut(s)	648, 902, 1328
BslI	CCNNNNNNNGG	1 cut(s)	1768
BsmAI	GTCTC	4 cut(s)	1409, 1766, 1968, 2098
BsmFI	GGGAC	3 cut(s)	648, 902, 1328
BsnI	GGCC	6 cut(s)	377, 401, 751, 1094, 1673, 1887
Bso31I	GGTCTC	2 cut(s)	1409, 2098
BsoBI	CYCGRG	3 cut(s)	407, 752, 1739
Bsp1286I	GDGCHC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
Bsp13I	TCCGGA	1 cut(s)	2212
Bsp1720I	GCTNAGC	2 cut(s)	417, 1831
Bsp19I	CCATGG	1 cut(s)	2226
BspANI	GGCC	6 cut(s)	377, 401, 751, 1094, 1673, 1887
BspCNI	CTCAG	4 cut(s)	32, 1844, 1857, 2229
BspEI	TCCGGA	1 cut(s)	2212
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	6 cut(s)	107, 671, 1753, 1921, 2193, 2227
BspTI	CTTAAG	1 cut(s)	2144
BspTNI	GGTCTC	2 cut(s)	1409, 2098
BsrBI	CCGCTC	3 cut(s)	257, 475, 748
BsrDI	GCAATG	3 cut(s)	949, 1483, 1692
BsrI	ACTGG	3 cut(s)	212, 1440, 1545
BssECI	CCNNGG	5 cut(s)	577, 752, 1095, 1683, 2226
BssNAI	GTATAC	2 cut(s)	1364, 2017
BssNI	GRCGYC	1 cut(s)	2061
BssT1I	CCWWGG	2 cut(s)	1095, 2226
Bst1107I	GTATAC	2 cut(s)	1364, 2017
Bst2UI	CCWGG	3 cut(s)	398, 1685, 1763
Bst4CI	ACNGT	7 cut(s)	569, 704, 1273, 1298, 1548, 1900, 2011
Bst6I	CTCTTC	5 cut(s)	242, 281, 391, 734, 961
BstACI	GRCGYC	1 cut(s)	2061
BstAFI	CTTAAG	1 cut(s)	2144
BstC8I	GCNNGC	2 cut(s)	414, 1645
BstDEI	CTNAG	6 cut(s)	19, 417, 1831, 1865, 1986, 2237
BstDSI	CCRYGG	1 cut(s)	2226
BstF5I	GGATG	9 cut(s)	550, 993, 1023, 1093, 1468, 1577, 1638, 1642, 1693
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	3 cut(s)	500, 949, 1433
BstMAI	GTCTC	4 cut(s)	1409, 1766, 1968, 2098
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	6 cut(s)	288, 374, 418, 442, 929, 2315
BstNI	CCWGG	3 cut(s)	398, 1685, 1763
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	8 cut(s)	396, 577, 693, 751, 752, 1673, 1683, 1761
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	1264
BstV1I	GCAGC	2 cut(s)	919, 2293
BstX2I	RGATCY	2 cut(s)	1965, 2232
BstYI	RGATCY	2 cut(s)	1965, 2232
BstZ17I	GTATAC	2 cut(s)	1364, 2017
BsuRI	GGCC	6 cut(s)	377, 401, 751, 1094, 1673, 1887
BtgI	CCRYGG	1 cut(s)	2226
BtrI	CACGTC	1 cut(s)	852
BtsCI	GGATG	9 cut(s)	550, 993, 1023, 1093, 1468, 1577, 1638, 1642, 1693
BtsI	GCAGTG	1 cut(s)	2313
BtsIMutI	CAGTG	6 cut(s)	650, 709, 772, 1433, 1538, 2313
Cac8I	GCNNGC	2 cut(s)	414, 1645
CfoI	GCGC	3 cut(s)	500, 949, 1433
Cfr13I	GGNCC	4 cut(s)	217, 574, 750, 1885
Cfr9I	CCCGGG	1 cut(s)	752
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	1489, 1862
CviQI	GTAC	2 cut(s)	1489, 1862
DdeI	CTNAG	6 cut(s)	19, 417, 1831, 1865, 1986, 2237
DraI	TTTAAA	1 cut(s)	2176
Eam1104I	CTCTTC	5 cut(s)	242, 281, 391, 734, 961
EarI	CTCTTC	5 cut(s)	242, 281, 391, 734, 961
EciI	GGCGGA	2 cut(s)	215, 238
Ecl136II	GAGCTC	2 cut(s)	412, 1336
Eco130I	CCWWGG	2 cut(s)	1095, 2226
Eco147I	AGGCCT	1 cut(s)	1094
Eco24I	GRGCYC	2 cut(s)	414, 1338
Eco31I	GGTCTC	2 cut(s)	1409, 2098
Eco47I	GGWCC	2 cut(s)	217, 574
Eco53kI	GAGCTC	2 cut(s)	412, 1336
Eco57I	CTGAAG	3 cut(s)	674, 758, 1954
Eco88I	CYCGRG	3 cut(s)	407, 752, 1739
EcoICRI	GAGCTC	2 cut(s)	412, 1336
EcoO109I	RGGNCCY	1 cut(s)	1885
EcoRI	GAATTC	1 cut(s)	1439
EcoRII	CCWGG	3 cut(s)	396, 1683, 1761
EcoT14I	CCWWGG	2 cut(s)	1095, 2226
EcoT38I	GRGCYC	2 cut(s)	414, 1338
ErhI	CCWWGG	2 cut(s)	1095, 2226
FaqI	GGGAC	3 cut(s)	648, 902, 1328
FbaI	TGATCA	3 cut(s)	846, 1164, 1342
FblI	GTMKAC	2 cut(s)	1363, 2016
FokI	GGATG	9 cut(s)	557, 1000, 1010, 1100, 1475, 1584, 1645, 1649, 1700
FriOI	GRGCYC	2 cut(s)	414, 1338
FspBI	CTAG	5 cut(s)	164, 441, 512, 876, 1077
GlaI	GCGC	3 cut(s)	499, 948, 1432
GsaI	CCCAGC	3 cut(s)	138, 527, 1839
GsuI	CTGGAG	2 cut(s)	1800, 2183
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	6 cut(s)	377, 401, 751, 1094, 1673, 1887
HapII	CCGG	7 cut(s)	485, 579, 695, 753, 1626, 1674, 2213
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	3 cut(s)	500, 949, 1433
Hin1I	GRCGYC	1 cut(s)	2061
Hin6I	GCGC	3 cut(s)	498, 947, 1431
HinP1I	GCGC	3 cut(s)	498, 947, 1431
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	7 cut(s)	107, 158, 191, 245, 362, 1921, 2033
HpaII	CCGG	7 cut(s)	485, 579, 695, 753, 1626, 1674, 2213
HphI	GGTGA	4 cut(s)	83, 348, 622, 2273
Hpy166II	GTNNAC	9 cut(s)	700, 1262, 1364, 1412, 1491, 1522, 1594, 2017, 2059
Hpy188I	TCNGA	7 cut(s)	112, 196, 244, 340, 1182, 1230, 1973
Hpy8I	GTNNAC	9 cut(s)	700, 1262, 1364, 1412, 1491, 1522, 1594, 2017, 2059
Hpy99I	CGWCG	4 cut(s)	74, 856, 1489, 2066
HpyCH4III	ACNGT	7 cut(s)	569, 704, 1273, 1298, 1548, 1900, 2011
HpyCH4IV	ACGT	6 cut(s)	333, 851, 891, 1225, 1487, 2061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	288, 374, 418, 442, 929, 2315
HpyF3I	CTNAG	6 cut(s)	19, 417, 1831, 1865, 1986, 2237
HpySE526I	ACGT	6 cut(s)	333, 851, 891, 1225, 1487, 2061
Hsp92I	GRCGYC	1 cut(s)	2061
HspAI	GCGC	3 cut(s)	498, 947, 1431
Kpn2I	TCCGGA	1 cut(s)	2212
Ksp22I	TGATCA	3 cut(s)	846, 1164, 1342
LmnI	GCTCC	6 cut(s)	228, 262, 759, 805, 1580, 2002
Lsp1109I	GCAGC	2 cut(s)	919, 2293
LweI	GCATC	8 cut(s)	291, 637, 1032, 1485, 1562, 1573, 1630, 1806
MaeI	CTAG	5 cut(s)	164, 441, 512, 876, 1077
MaeII	ACGT	6 cut(s)	333, 851, 891, 1225, 1487, 2061
MaeIII	GTNAC	6 cut(s)	166, 706, 1039, 1273, 1378, 1480
MbiI	CCGCTC	3 cut(s)	257, 475, 748
MflI	RGATCY	2 cut(s)	1965, 2232
MhlI	GDGCHC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
MluCI	AATT	7 cut(s)	95, 797, 842, 910, 1439, 2155, 2177
MlyI	GAGTC	3 cut(s)	152, 239, 356
MmeI	TCCRAC	2 cut(s)	205, 267
MroI	TCCGGA	1 cut(s)	2212
MroXI	GAANNNNTTC	1 cut(s)	1967
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	3 cut(s)	503, 1778, 1835
MspCI	CTTAAG	1 cut(s)	2144
MspI	CCGG	7 cut(s)	485, 579, 695, 753, 1626, 1674, 2213
MspR9I	CCNGG	8 cut(s)	398, 579, 695, 753, 754, 1675, 1685, 1763
MvaI	CCWGG	3 cut(s)	398, 1685, 1763
MwoI	GCNNNNNNNGC	6 cut(s)	288, 374, 418, 442, 929, 2315
NciI	CCSGG	5 cut(s)	579, 695, 753, 754, 1675
NcoI	CCATGG	1 cut(s)	2226
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	1480
NspI	RCATGY	1 cut(s)	457
PaeR7I	CTCGAG	2 cut(s)	407, 1739
PceI	AGGCCT	1 cut(s)	1094
PciI	ACATGT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	2 cut(s)	1490, 1817
PdmI	GAANNNNTTC	1 cut(s)	1967
PfeI	GAWTC	4 cut(s)	107, 191, 1921, 2033
PflMI	CCANNNNNTGG	1 cut(s)	1768
PfoI	TCCNGGA	1 cut(s)	1761
Ple19I	CGATCG	1 cut(s)	521
PleI	GAGTC	3 cut(s)	152, 239, 356
PpsI	GAGTC	3 cut(s)	152, 239, 356
PscI	ACATGT	1 cut(s)	453
PshBI	ATTAAT	3 cut(s)	909, 1713, 2180
Psp124BI	GAGCTC	2 cut(s)	414, 1338
Psp6I	CCWGG	3 cut(s)	396, 1683, 1761
PspFI	CCCAGC	3 cut(s)	134, 523, 1835
PspGI	CCWGG	3 cut(s)	396, 1683, 1761
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	4 cut(s)	217, 574, 750, 1885
PsuI	RGATCY	2 cut(s)	1965, 2232
PvuI	CGATCG	1 cut(s)	521
PvuII	CAGCTG	2 cut(s)	1778, 1835
RsaI	GTAC	2 cut(s)	1490, 1863
RsaNI	GTAC	2 cut(s)	1489, 1862
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	2 cut(s)	414, 1338
Sau96I	GGNCC	4 cut(s)	217, 574, 750, 1885
ScaI	AGTACT	1 cut(s)	1863
SchI	GAGTC	3 cut(s)	152, 239, 356
ScrFI	CCNGG	8 cut(s)	398, 579, 695, 753, 754, 1675, 1685, 1763
SduI	GDGCHC	6 cut(s)	414, 663, 1264, 1338, 1832, 1999
SfaNI	GCATC	8 cut(s)	291, 637, 1032, 1485, 1562, 1573, 1630, 1806
SfcI	CTRYAG	1 cut(s)	924
Sfr274I	CTCGAG	2 cut(s)	407, 1739
SinI	GGWCC	2 cut(s)	217, 574
SlaI	CTCGAG	2 cut(s)	407, 1739
SmaI	CCCGGG	1 cut(s)	754
SmiI	ATTTAAAT	1 cut(s)	2176
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	4 cut(s)	317, 407, 1739, 2144
SmoI	CTYRAG	4 cut(s)	317, 407, 1739, 2144
SpeI	ACTAGT	1 cut(s)	875
Sse9I	AATT	7 cut(s)	95, 797, 842, 910, 1439, 2155, 2177
SseBI	AGGCCT	1 cut(s)	1094
SspI	AATATT	1 cut(s)	1528
SspMI	CTAG	5 cut(s)	164, 441, 512, 876, 1077
SstI	GAGCTC	2 cut(s)	414, 1338
StuI	AGGCCT	1 cut(s)	1094
StyD4I	CCNGG	8 cut(s)	396, 577, 693, 751, 752, 1673, 1683, 1761
StyI	CCWWGG	2 cut(s)	1095, 2226
SwaI	ATTTAAAT	1 cut(s)	2176
TaaI	ACNGT	7 cut(s)	569, 704, 1273, 1298, 1548, 1900, 2011
TaiI	ACGT	6 cut(s)	336, 854, 894, 1228, 1490, 2064
TaqI	TCGA	9 cut(s)	189, 327, 408, 450, 517, 642, 663, 1320, 1740
TasI	AATT	7 cut(s)	95, 797, 842, 910, 1439, 2155, 2177
TatI	WGTACW	1 cut(s)	1861
TauI	GCSGC	8 cut(s)	254, 257, 294, 371, 374, 377, 503, 751
TfiI	GAWTC	4 cut(s)	107, 191, 1921, 2033
TscAI	CASTG	6 cut(s)	657, 709, 772, 1440, 1545, 2320
TseFI	GTSAC	1 cut(s)	1480
TseI	GCWGC	2 cut(s)	932, 2306
Tsp45I	GTSAC	1 cut(s)	1480
TspGWI	ACGGA	1 cut(s)	58
TspMI	CCCGGG	1 cut(s)	752
TspRI	CASTG	6 cut(s)	657, 709, 772, 1440, 1545, 2320
Van91I	CCANNNNNTGG	1 cut(s)	1768
Vha464I	CTTAAG	1 cut(s)	2144
VneI	GTGCAC	1 cut(s)	1260
VpaK11BI	GGWCC	2 cut(s)	217, 574
VspI	ATTAAT	3 cut(s)	909, 1713, 2180
XapI	RAATTY	2 cut(s)	797, 1439
XceI	RCATGY	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XhoI	CTCGAG	2 cut(s)	407, 1739
XmaI	CCCGGG	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	1363, 2016
XmnI	GAANNNNTTC	1 cut(s)	1967
XspI	CTAG	5 cut(s)	164, 441, 512, 876, 1077
ZraI	GACGTC	1 cut(s)	2062
ZrmI	AGTACT	1 cut(s)	1863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.