Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

17612286 .. 17614145

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1071400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGGCAAAAGAGCGGAACATCCCGGTTAATATGGGCGCCGCTGTTCTGCTAGTTCGATCCCTCGGCTTTGCTGGTATGGTTGATGAGGCGGTCAATGTGTTTAACGGTCTGGACCCTGCTTTGAAGAACACCCATCTTCGCAATGTGGTGATTGATGTGCTGTTGAAATGGGGACGGGTCGATGATGCACTGAAGGTGCTCGACAAAATGTTTGATCCAAATGCAGAGTTCCGGGTCGACAGTGTTACTGGTGATATTGTGCTTTCCTCTTTGCTGAAGAGAGAGCAGCGTGGGAGGAGGGTCAGCGATGAGGACATTGTGGGTTTGGTGCAGAAATTTGGTGAGCATGGTGTGTTCCCTGATAGTTTGAAACTTACGAAATTGATCACTTCGTTATGTCGGAACAGGAACACTAATCGGGCTTGGGATGTTTTACAGTACGTTATTAATTCTGGTGGTGCTGTAGAAACTGCTTGTTGCAATGCGCTTTTGACAGGTTTGGGAAGAGTTAATGATTTTAAGAGGATGAATGTGCTTATGGTAAAGATGAAAGAAATGGACATTCTTCCCGATGTTGTAACTATCGGTATTGTCATTAACTTTTTGTGCAAGTCAAGGAGGGTGGATGAGGCCTTGGAGTTGTTTGAAAGGATGAGTGGAGGAGGAGAGAAAACTGATGGGATTTCAGCTGAACCCGATGAGATCATGTACAACACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGATTACGTCTGATGGAAAAAATGAGATTGCAAAAGGGCTGTGCACCTAATACTGTTACCTACAATAGTTTGATTGACGGTTTCAACAAGGTTGGGGACATCAAGAGGGGTCGTGAGCTCTATGATCAAATGAAGGAGGAAGGTATACCACCAAGTGTAGTTACTCTCAATACTTTGGTTGATGGTCTGTGTAGACATGGAAGGATGAACAGTGCAATTGAGTTCCTTAATGAAATGCAGAGGGATGGTCTGAAAGGCAATGTCACGACTTACACAACGTTAATCAGTTCCTTTTGTAATGTAAACAATATTGGCATGGCAATGGAACTGTTTGAGCAAATGTTAAGTTCTGGATGCTCCACAGATGCAAAAGTTTATTACTGCATGATCTCTGGTTTAAGCCAAGCTGGAAGGATGGATGATGCCAGCTTTGTTGTATCAAAGTTGAAGGACGCCGGGTTCTCCCTGGATGTCGTTGCCTTCAATGTTTTGATTAATGGGTTCTGCAAGACAAAAAAACTCGAGAAGGTGCATGAGATGATCGAGGAAATGGAGACAGTTGGAGTAAAGCCTGATAGCATCACATACAACACGTTGATTTCGTATTTGTGCTCAGCTGGGGAACTTACAATTGCTGATAAAGTACTGAGCAAGATGATAAACGAGGGTCTTGTTCCCACTGTTATCACTTTTGGATCATTGATACATGCATATTGCTTGAAGGGCGATATAAACAAAGCCATGAAGATCTTCAGAGACATGGGTTCTAAGTCGAGTGCTCCTCCCAACACAGTAGTATACAACATCTTAATAGATTCTTTGTGCAAGAATAATCAAGTGGAATTCGCTCTTTCGTTGATGGATAGTATGAAAGATAAGGGAGTGAGGCCTAATACCTTGACATTCAATGCCATGTTCAAAGGTCTTAGGGAGAATAATTTGTTGCAGAAAGCATTTCAGTTAATGGATCAAATGGTTGAACAGGCTTGTAATCCGGATTATATAACCATGGAGATTCTCACCGAATGGCTTTCTGCTGTTGGTGAAACCGAAAAGTTGAGAAGGTTTGTGCAAGGATATGACATTGCTGCTTCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

620

Amino Acids

68.69

Weight (kDa)

5.71

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 204	2.7e-07	PPR repeat family
PPR_1	PF12854	187 - 219	5.5e-08	PPR repeat
PPR_2	PF13041	190 - 224	9.4e-06	PPR repeat family
PPR_3	PF13812	231 - 278	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	231 - 261	2.3e-09	PPR repeat
PPR_2	PF13041	232 - 281	1.2e-14	PPR repeat family
PPR_1	PF12854	264 - 297	3.6e-09	PPR repeat
TPR_24	PF23276	266 - 365	1.5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	268 - 317	5.8e-16	PPR repeat family
PPR	PF01535	271 - 301	2.5e-07	PPR repeat
PPR_3	PF13812	271 - 312	5e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	285 - 403	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	300 - 332	5.5e-13	PPR repeat
PPR_2	PF13041	303 - 352	3.9e-17	PPR repeat family
PPR	PF01535	306 - 336	1.2e-07	PPR repeat
TPR_24	PF23276	317 - 429	1.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	328 - 372	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 366	1.3e-08	PPR repeat
PPR_2	PF13041	339 - 386	3.7e-11	PPR repeat family
PPR	PF01535	342 - 371	4.8e-07	PPR repeat
PPR_long	PF17177	354 - 459	4.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	376 - 422	2.4e-08	PPR repeat family
TPR_24	PF23276	388 - 505	5e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	397 - 454	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	405 - 437	1e-05	PPR repeat
PPR_long	PF17177	407 - 507	4.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	409 - 452	3.1e-14	PPR repeat family
PPR	PF01535	411 - 440	4.4e-06	PPR repeat
PPR_3	PF13812	434 - 490	6.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	440 - 471	7.5e-09	PPR repeat
PPR_2	PF13041	443 - 491	3.9e-13	PPR repeat family
PPR_3	PF13812	466 - 525	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	475 - 506	1.1e-10	PPR repeat
PPR_2	PF13041	478 - 510	3.9e-06	PPR repeat family
PPR	PF01535	481 - 509	7.9e-06	PPR repeat
PPR_3	PF13812	502 - 559	4.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	513 - 543	1.2e-08	PPR repeat
PPR_2	PF13041	514 - 561	3.8e-17	PPR repeat family
TPR_24	PF23276	515 - 607	1.9e-06	Fungal tetratrico peptide repeats
PPR	PF01535	517 - 547	8.1e-08	PPR repeat
PPR_2	PF13041	554 - 592	8.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	4 cut(s)	237, 901, 949, 1554
AccIII	TCCGGA	1 cut(s)	1750
AciI	CCGC	3 cut(s)	13, 39, 89
AclI	AACGTT	1 cut(s)	1034
AclWI	GGATC	4 cut(s)	51, 209, 1459, 1731
AcsI	RAATTY	2 cut(s)	335, 1598
AcuI	CTGAAG	3 cut(s)	212, 296, 1492
AcyI	GRCGYC	2 cut(s)	36, 1209
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	3 cut(s)	440, 710, 1401
AflIII	ACRYGT	1 cut(s)	1347
AjnI	CCWGG	1 cut(s)	1221
AloI	GAACNNNNNNTCC	2 cut(s)	1199, 1231
AluBI	AGCT	5 cut(s)	689, 874, 1163, 1185, 1373
AluI	AGCT	5 cut(s)	689, 874, 1163, 1185, 1373
Alw21I	GWGCWC	5 cut(s)	201, 802, 876, 1370, 1537
Alw26I	GTCTC	2 cut(s)	1304, 1506
Alw44I	GTGCAC	1 cut(s)	798
AlwI	GGATC	4 cut(s)	51, 209, 1459, 1731
Ama87I	CYCGRG	1 cut(s)	1277
Aor13HI	TCCGGA	1 cut(s)	1750
AoxI	GGCC	2 cut(s)	630, 1643
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	286, 1844
ApoI	RAATTY	2 cut(s)	335, 1598
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AseI	ATTAAT	2 cut(s)	447, 1251
Asp700I	GAANNNNTTC	1 cut(s)	1505
AspLEI	GCGC	2 cut(s)	38, 487
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	3 cut(s)	23, 233, 1213
AsuHPI	GGTGA	5 cut(s)	160, 263, 353, 1768, 1811
AvaI	CYCGRG	1 cut(s)	1277
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	876
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
Bbv12I	GWGCWC	5 cut(s)	201, 802, 876, 1370, 1537
BbvI	GCAGC	2 cut(s)	298, 1831
BccI	CCATC	8 cut(s)	141, 671, 719, 763, 932, 995, 1165, 1609
BciT130I	CCWGG	1 cut(s)	1223
BclI	TGATCA	2 cut(s)	384, 880
BcnI	CCSGG	3 cut(s)	23, 233, 1213
BcoDI	GTCTC	2 cut(s)	1304, 1506
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	39
BglII	AGATCT	1 cut(s)	1503
BisI	GCNGC	3 cut(s)	39, 287, 1845
BlpI	GCTNAGC	1 cut(s)	1369
BlsI	GCNGC	3 cut(s)	40, 288, 1846
BmcAI	AGTACT	1 cut(s)	1401
Bme1390I	CCNGG	4 cut(s)	23, 233, 1213, 1223
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	1277
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	37, 114
BmrFI	CCNGG	4 cut(s)	23, 233, 1213, 1223
BmsI	GCATC	5 cut(s)	175, 1100, 1111, 1168, 1344
BplI	GAGNNNNNCTC	2 cut(s)	1522, 1554
Bpu1102I	GCTNAGC	1 cut(s)	1369
BpuMI	CCSGG	3 cut(s)	23, 233, 1213
BsaHI	GRCGYC	2 cut(s)	36, 1209
BsaJI	CCNNGG	4 cut(s)	61, 633, 1221, 1764
BsaWI	WCCGGW	1 cut(s)	1750
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	5 cut(s)	148, 487, 1021, 1083, 1839
BseAI	TCCGGA	1 cut(s)	1750
BseBI	CCWGG	1 cut(s)	1223
BseDI	CCNNGG	4 cut(s)	61, 633, 1221, 1764
BseMI	GCAATG	5 cut(s)	148, 487, 1021, 1083, 1839
BseMII	CTCAG	2 cut(s)	1383, 1394
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	310, 675, 678, 1527
BseSI	GKGCMC	1 cut(s)	802
BseXI	GCAGC	2 cut(s)	298, 1831
BseYI	CCCAGC	1 cut(s)	1373
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	632, 1645
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	5 cut(s)	201, 802, 876, 1370, 1537
BsiHKCI	CYCGRG	1 cut(s)	1277
BsiSI	CCGG	4 cut(s)	23, 232, 1212, 1751
BslFI	GGGAC	2 cut(s)	186, 866
BsmAI	GTCTC	2 cut(s)	1304, 1506
BsmFI	GGGAC	2 cut(s)	186, 866
BsnI	GGCC	2 cut(s)	632, 1645
BsoBI	CYCGRG	1 cut(s)	1277
Bsp1286I	GDGCHC	5 cut(s)	201, 802, 876, 1370, 1537
Bsp13I	TCCGGA	1 cut(s)	1750
Bsp1407I	TGTACA	1 cut(s)	708
Bsp1720I	GCTNAGC	1 cut(s)	1369
Bsp19I	CCATGG	1 cut(s)	1764
BspACI	CCGC	3 cut(s)	13, 39, 89
BspANI	GGCC	2 cut(s)	632, 1645
BspCNI	CTCAG	2 cut(s)	1382, 1395
BspEI	TCCGGA	1 cut(s)	1750
BspLI	GGNNCC	2 cut(s)	37, 114
BspPI	GGATC	4 cut(s)	51, 209, 1459, 1731
BspT107I	GGYRCC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	13
BsrDI	GCAATG	5 cut(s)	148, 487, 1021, 1083, 1839
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	4 cut(s)	61, 633, 1221, 1764
BssNAI	GTATAC	2 cut(s)	902, 1555
BssNI	GRCGYC	2 cut(s)	36, 1209
BssT1I	CCWWGG	2 cut(s)	633, 1764
Bst1107I	GTATAC	2 cut(s)	902, 1555
Bst2UI	CCWGG	1 cut(s)	1223
Bst6I	CTCTTC	2 cut(s)	272, 499
BstACI	GRCGYC	2 cut(s)	36, 1209
BstAUI	TGTACA	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	1183
BstDEI	CTNAG	4 cut(s)	1369, 1403, 1524, 1682
BstDSI	CCRYGG	1 cut(s)	1764
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 487
BstMAI	GTCTC	2 cut(s)	1304, 1506
BstMWI	GCNNNNNNNGC	2 cut(s)	1479, 1853
BstNI	CCWGG	1 cut(s)	1223
BstNSI	RCATGY	1 cut(s)	1466
BstSCI	CCNGG	4 cut(s)	21, 231, 1211, 1221
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	802
BstV1I	GCAGC	2 cut(s)	298, 1831
BstX2I	RGATCY	1 cut(s)	1503
BstYI	RGATCY	1 cut(s)	1503
BstZ17I	GTATAC	2 cut(s)	902, 1555
BsuRI	GGCC	2 cut(s)	632, 1645
BtgI	CCRYGG	1 cut(s)	1764
BtgZI	GCGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	1851
BtsIMutI	CAGTG	5 cut(s)	188, 247, 973, 1434, 1851
Cac8I	GCNNGC	1 cut(s)	1183
CfoI	GCGC	2 cut(s)	38, 487
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	1217
Csp6I	GTAC	3 cut(s)	439, 709, 1400
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviQI	GTAC	3 cut(s)	439, 709, 1400
DdeI	CTNAG	4 cut(s)	1369, 1403, 1524, 1682
DinI	GGCGCC	1 cut(s)	37
DraIII	CACNNNGTG	1 cut(s)	911
Eam1104I	CTCTTC	2 cut(s)	272, 499
EarI	CTCTTC	2 cut(s)	272, 499
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	2 cut(s)	633, 1764
Eco147I	AGGCCT	2 cut(s)	632, 1645
Eco24I	GRGCYC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	3 cut(s)	212, 296, 1492
Eco88I	CYCGRG	1 cut(s)	1277
EcoICRI	GAGCTC	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	1598
EcoRII	CCWGG	1 cut(s)	1221
EcoT14I	CCWWGG	2 cut(s)	633, 1764
EcoT22I	ATGCAT	1 cut(s)	1468
EcoT38I	GRGCYC	1 cut(s)	876
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	633, 1764
FaqI	GGGAC	2 cut(s)	186, 866
FbaI	TGATCA	2 cut(s)	384, 880
FblI	GTMKAC	4 cut(s)	237, 901, 949, 1554
Fnu4HI	GCNGC	3 cut(s)	39, 287, 1845
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	3 cut(s)	39, 287, 1845
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	37, 486
GluI	GCNGC	3 cut(s)	39, 287, 1845
GsaI	CCCAGC	1 cut(s)	1377
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	632, 1645
HapII	CCGG	4 cut(s)	23, 232, 1212, 1751
HgaI	GACGC	1 cut(s)	1217
HhaI	GCGC	2 cut(s)	38, 487
Hin1I	GRCGYC	2 cut(s)	36, 1209
Hin6I	GCGC	2 cut(s)	36, 485
HinP1I	GCGC	2 cut(s)	36, 485
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	1571, 1771
HpaII	CCGG	4 cut(s)	23, 232, 1212, 1751
HphI	GGTGA	5 cut(s)	160, 263, 353, 1768, 1811
Hpy166II	GTNNAC	6 cut(s)	238, 800, 902, 950, 1060, 1555
Hpy188I	TCNGA	5 cut(s)	402, 720, 768, 1008, 1511
Hpy188III	TCNNGA	8 cut(s)	110, 569, 859, 869, 1021, 1107, 1279, 1751
Hpy8I	GTNNAC	6 cut(s)	238, 800, 902, 950, 1060, 1555
HpyCH4IV	ACGT	4 cut(s)	441, 763, 1034, 1349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1479, 1853
HpyF3I	CTNAG	4 cut(s)	1369, 1403, 1524, 1682
HpySE526I	ACGT	4 cut(s)	441, 763, 1034, 1349
Hsp92I	GRCGYC	2 cut(s)	36, 1209
HspAI	GCGC	2 cut(s)	36, 485
KasI	GGCGCC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	1750
Ksp22I	TGATCA	2 cut(s)	384, 880
LmnI	GCTCC	2 cut(s)	1118, 1540
Lsp1109I	GCAGC	2 cut(s)	298, 1831
LweI	GCATC	5 cut(s)	175, 1100, 1111, 1168, 1344
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	4 cut(s)	441, 763, 1034, 1349
MaeIII	GTNAC	5 cut(s)	244, 577, 811, 916, 1018
MbiI	CCGCTC	1 cut(s)	13
MboII	GAAGA	8 cut(s)	128, 136, 289, 516, 557, 764, 1498, 1513
MfeI	CAATTG	2 cut(s)	972, 1386
MflI	RGATCY	1 cut(s)	1503
MhlI	GDGCHC	5 cut(s)	201, 802, 876, 1370, 1537
MluCI	AATT	7 cut(s)	335, 380, 448, 972, 1386, 1598, 1693
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	2 cut(s)	380, 1297
Mph1103I	ATGCAT	1 cut(s)	1468
MroI	TCCGGA	1 cut(s)	1750
MroXI	GAANNNNTTC	1 cut(s)	1505
MslI	CAYNNNNRTG	1 cut(s)	1076
MspA1I	CMGCKG	3 cut(s)	41, 689, 1373
MspI	CCGG	4 cut(s)	23, 232, 1212, 1751
MspR9I	CCNGG	4 cut(s)	23, 233, 1213, 1223
MunI	CAATTG	2 cut(s)	972, 1386
MvaI	CCWGG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	2 cut(s)	1479, 1853
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	23, 233, 1213
NcoI	CCATGG	1 cut(s)	1764
NlaIV	GGNNCC	2 cut(s)	37, 114
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	1018
NsiI	ATGCAT	1 cut(s)	1468
NspI	RCATGY	1 cut(s)	1466
PaeR7I	CTCGAG	1 cut(s)	1277
PceI	AGGCCT	2 cut(s)	632, 1645
PcsI	WCGNNNNNNNCGW	1 cut(s)	1355
PdmI	GAANNNNTTC	1 cut(s)	1505
PfeI	GAWTC	2 cut(s)	1571, 1771
PkrI	GCNGC	3 cut(s)	40, 288, 1846
PluTI	GGCGCC	1 cut(s)	39
PshBI	ATTAAT	2 cut(s)	447, 1251
Psp124BI	GAGCTC	1 cut(s)	876
Psp1406I	AACGTT	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	1221
PspFI	CCCAGC	1 cut(s)	1373
PspGI	CCWGG	1 cut(s)	1221
PspN4I	GGNNCC	2 cut(s)	37, 114
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	1503
PvuII	CAGCTG	2 cut(s)	689, 1373
RsaI	GTAC	3 cut(s)	440, 710, 1401
RsaNI	GTAC	3 cut(s)	439, 709, 1400
RseI	CAYNNNNRTG	1 cut(s)	1076
SacI	GAGCTC	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	3 cut(s)	39, 287, 1845
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	1 cut(s)	1401
ScrFI	CCNGG	4 cut(s)	23, 233, 1213, 1223
SduI	GDGCHC	5 cut(s)	201, 802, 876, 1370, 1537
SfaNI	GCATC	5 cut(s)	175, 1100, 1111, 1168, 1344
SfcI	CTRYAG	1 cut(s)	462
SfoI	GGCGCC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	1277
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	1277
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	1 cut(s)	1277
SmoI	CTYRAG	1 cut(s)	1277
Sse9I	AATT	7 cut(s)	335, 380, 448, 972, 1386, 1598, 1693
SseBI	AGGCCT	2 cut(s)	632, 1645
SsiI	CCGC	3 cut(s)	13, 39, 89
SspDI	GGCGCC	1 cut(s)	35
SspI	AATATT	1 cut(s)	1066
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	2 cut(s)	632, 1645
StyD4I	CCNGG	4 cut(s)	21, 231, 1211, 1221
StyI	CCWWGG	2 cut(s)	633, 1764
TaiI	ACGT	4 cut(s)	444, 766, 1037, 1352
TaqI	TCGA	7 cut(s)	55, 180, 201, 237, 1278, 1299, 1529
TasI	AATT	7 cut(s)	335, 380, 448, 972, 1386, 1598, 1693
TatI	WGTACW	2 cut(s)	708, 1399
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	1571, 1771
TscAI	CASTG	5 cut(s)	195, 247, 973, 1441, 1858
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	2 cut(s)	286, 1844
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	7 cut(s)	542, 563, 902, 977, 1002, 1514, 1640
TspRI	CASTG	5 cut(s)	195, 247, 973, 1441, 1858
VneI	GTGCAC	1 cut(s)	798
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	2 cut(s)	447, 1251
XapI	RAATTY	2 cut(s)	335, 1598
XceI	RCATGY	1 cut(s)	1466
XhoI	CTCGAG	1 cut(s)	1277
XmiI	GTMKAC	4 cut(s)	237, 901, 949, 1554
XmnI	GAANNNNTTC	1 cut(s)	1505
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	1401
Zsp2I	ATGCAT	1 cut(s)	1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.