Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

8875190 .. 8877455

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATGCAGGGAGTGGTGAGATGTTTCACCAGAAGACCCAGCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGACCCCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCGGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAGAGCTCCAAGAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGCCAACACCAACTCTGCTTTTGCCTCTCATTTGGGCAAGGTTCCGATCAATTCCGGCACCGGCACCGGCACCGGCACCGGCACGGGCACCGGCACCGCCCCGGTTGCTCCGAGCTCAAACCCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGGTACTTTTTCGGAACTAGTCACTCTGTCTCGATATGAAGCAATGCTATGTGTAACATGTTTTGATGAATCGTATTGGTTTCTATCTCATTGCAGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCGAAGAGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

234

Amino Acids

25.3

Weight (kDa)

7.01

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	68 - 101	1e-19	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	6 cut(s)	410, 416, 422, 428, 440, 446
AciI	CCGC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	2 cut(s)	112, 678
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	196, 685
AluBI	AGCT	3 cut(s)	140, 312, 468
AluI	AGCT	3 cut(s)	140, 312, 468
Alw21I	GWGCWC	2 cut(s)	314, 470
Alw26I	GTCTC	2 cut(s)	509, 585
AoxI	GGCC	2 cut(s)	213, 354
ApeKI	GCWGC	2 cut(s)	43, 329
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	149, 193, 214
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	20, 29, 298
AvaII	GGWCC	2 cut(s)	149, 193
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	6 cut(s)	410, 416, 422, 428, 440, 446
BanII	GRGCYC	3 cut(s)	207, 314, 470
BbsI	GAAGAC	2 cut(s)	41, 194
Bbv12I	GWGCWC	2 cut(s)	314, 470
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	55, 316
BccI	CCATC	3 cut(s)	233, 527, 551
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	2 cut(s)	198, 687
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	509, 585
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	2 cut(s)	177, 569
BisI	GCNGC	2 cut(s)	44, 330
BlsI	GCNGC	2 cut(s)	45, 331
Bme1390I	CCNGG	3 cut(s)	198, 455, 687
Bme18I	GGWCC	2 cut(s)	149, 193
BmgT120I	GGNCC	3 cut(s)	149, 193, 214
BmrFI	CCNGG	3 cut(s)	198, 455, 687
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	41, 194
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	6 cut(s)	77, 101, 117, 196, 197, 453
BsaWI	WCCGGW	2 cut(s)	61, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	6 cut(s)	88, 413, 419, 425, 431, 443
Bse3DI	GCAATG	2 cut(s)	600, 640
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	198, 687
BseDI	CCNNGG	6 cut(s)	77, 101, 117, 196, 197, 453
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	2 cut(s)	600, 640
BseMII	CTCAG	2 cut(s)	146, 261
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	55, 316
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	215, 356
BshNI	GGYRCC	6 cut(s)	410, 416, 422, 428, 440, 446
BsiHKAI	GWGCWC	2 cut(s)	314, 470
BslFI	GGGAC	3 cut(s)	119, 179, 525
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	509, 585
BsmFI	GGGAC	3 cut(s)	119, 179, 525
BsnI	GGCC	2 cut(s)	215, 356
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	4 cut(s)	207, 314, 443, 470
Bsp143I	GATC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	2 cut(s)	215, 356
BspCNI	CTCAG	2 cut(s)	145, 262
BspT107I	GGYRCC	6 cut(s)	410, 416, 422, 428, 440, 446
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	600, 640
BsrFI	RCCGGY	6 cut(s)	88, 413, 419, 425, 431, 443
BssAI	RCCGGY	6 cut(s)	88, 413, 419, 425, 431, 443
BssECI	CCNNGG	6 cut(s)	77, 101, 117, 196, 197, 453
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	198, 687
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	90, 138, 301
BstDEI	CTNAG	3 cut(s)	132, 270, 295
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	2 cut(s)	509, 585
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 309, 318, 458
BstNI	CCWGG	2 cut(s)	198, 687
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	3 cut(s)	196, 453, 685
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	55, 316
BstV2I	GAAGAC	2 cut(s)	41, 194
BsuRI	GGCC	2 cut(s)	215, 356
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	90, 138, 301
Cfr10I	RCCGGY	6 cut(s)	88, 413, 419, 425, 431, 443
Cfr13I	GGNCC	3 cut(s)	149, 193, 214
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	4 cut(s)	67, 118, 335, 609
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	3 cut(s)	132, 270, 295
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Ecl136II	GAGCTC	2 cut(s)	312, 468
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	3 cut(s)	207, 314, 470
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	149, 193
Eco53kI	GAGCTC	2 cut(s)	312, 468
EcoICRI	GAGCTC	2 cut(s)	312, 468
EcoRII	CCWGG	2 cut(s)	196, 685
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	3 cut(s)	207, 314, 470
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	70, 121, 338, 612
FaiI	YATR	8 cut(s)	68, 119, 234, 336, 588, 601, 610, 651
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FaqI	GGGAC	3 cut(s)	119, 179, 525
FatI	CATG	4 cut(s)	66, 117, 334, 608
Fnu4HI	GCNGC	2 cut(s)	44, 330
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	3 cut(s)	207, 314, 470
Fsp4HI	GCNGC	2 cut(s)	44, 330
FspBI	CTAG	2 cut(s)	177, 569
GluI	GCNGC	2 cut(s)	44, 330
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	215, 356
Hin1II	CATG	4 cut(s)	70, 121, 338, 612
HinfI	GANTC	5 cut(s)	97, 173, 502, 535, 620
HphI	GGTGA	3 cut(s)	20, 29, 298
Hpy188I	TCNGA	5 cut(s)	96, 102, 399, 465, 565
Hpy188III	TCNNGA	1 cut(s)	582
HpyAV	CCTTC	3 cut(s)	268, 659, 692
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	8, 645, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 309, 318, 458
HpyF3I	CTNAG	3 cut(s)	132, 270, 295
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	70, 121, 338, 612
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	5 cut(s)	97, 202, 317, 349, 466
Lsp1109I	GCAGC	2 cut(s)	55, 316
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	2 cut(s)	177, 569
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	571, 604
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	5 cut(s)	46, 196, 199, 220, 704
MhlI	GDGCHC	4 cut(s)	207, 314, 443, 470
MluCI	AATT	2 cut(s)	52, 403
MlyI	GAGTC	2 cut(s)	106, 529
MnlI	CCTC	7 cut(s)	72, 96, 141, 165, 277, 388, 688
MroNI	GCCGGC	1 cut(s)	88
MspR9I	CCNGG	3 cut(s)	198, 455, 687
MvaI	CCWGG	2 cut(s)	198, 687
MwoI	GCNNNNNNNGC	4 cut(s)	275, 309, 318, 458
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	399
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	4 cut(s)	70, 121, 338, 612
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	612
PasI	CCCWGGG	1 cut(s)	197
PciI	ACATGT	1 cut(s)	608
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	173, 502, 620
PkrI	GCNGC	2 cut(s)	45, 331
PleI	GAGTC	2 cut(s)	105, 529
PpsI	GAGTC	2 cut(s)	105, 529
PscI	ACATGT	1 cut(s)	608
Psp124BI	GAGCTC	2 cut(s)	314, 470
Psp6I	CCWGG	2 cut(s)	196, 685
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	196, 685
PspPI	GGNCC	3 cut(s)	149, 193, 214
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SacI	GAGCTC	2 cut(s)	314, 470
SatI	GCNGC	2 cut(s)	44, 330
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	3 cut(s)	149, 193, 214
SchI	GAGTC	2 cut(s)	106, 529
ScrFI	CCNGG	3 cut(s)	198, 455, 687
SduI	GDGCHC	4 cut(s)	207, 314, 443, 470
SetI	ASST	6 cut(s)	87, 142, 288, 314, 396, 470
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	2 cut(s)	149, 193
SpeI	ACTAGT	1 cut(s)	568
Sse9I	AATT	2 cut(s)	52, 403
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	177, 569
SstI	GAGCTC	2 cut(s)	314, 470
StyD4I	CCNGG	3 cut(s)	196, 453, 685
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	255, 583
TasI	AATT	2 cut(s)	52, 403
TfiI	GAWTC	3 cut(s)	173, 502, 620
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	43, 329
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	65, 603, 633
VpaK11BI	GGWCC	2 cut(s)	149, 193
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	612
XspI	CTAG	2 cut(s)	177, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.