Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

17843310 .. 17845336

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1220400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCGAGTTCGTCGGAGAAATTTTCAGGCCAGAGAGGGATGAGGACGGCGGAGAAGCCGTCGAGCTTCACTCAGACATGCAGCATGCTTTGCCAGTACCTCAAGGAGGAAGGCAGCTTTGGAGATCTGAATCTTGACATGGCATGCAACAACATGCAACAATCAAATGGAGGAGCACCTGAGATGTTTCATCAGAAAGCCCCACCCATGAATTTCTTTCCATTTATGGAAACTTCTCGAAACATGCCAACGGCGGCTAGAGATTTCAAATCCATGGATTTGTTTCCTCAACAAGCTGGTTTTGGTCCCTCTGCCCCCACTCCCAGAGAAGAGGTCCCCATGATGGCTGATTCTAGTGTGAAGAAATCTGCCCCGGGAGAGCCTCAAAAGGCACAAATGACTATCTTTTATGATGGACAAGTCATAGTGTTCAATGATTTTCCCGCGGACAAGGCGAAGGAAGTCATGCTCTTAGCAAGCAAGGAAAGTTCCCAGAGGCATACCACTCCAGCTTCTACTCCGGCCAACATTAACAATGCCTTTGCCTCTCATTTGGGCAAGAGTCCAATTAATTCCAGCAGTTCAGTTCCCCCGAGCACAAACATGTTGCCTAAGTTTGACAATCAAGCGATCCAGGAGGGCGACAAGCCATCCCCTCGACCGATAGTCTGTGATCTTCCACTTGCGAGGAAAGCTTCGCTGCATCGATTCCTTGAAAAGAGAAAGGATAGGCTCAGCACGCGAGCACCGTACCAAACGAGCAGCCCTTCATCCGGCCCGGTGAAGCCAACCGAAAACAAGTCATGGTTAGGGTTGGCTGCTCAACAAACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

279

Amino Acids

30.45

Weight (kDa)

9.0

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	127 - 160	1.2e-18	tify domain
Jas_motif	PF09425	227 - 252	4.4e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	446, 742
AciI	CCGC	4 cut(s)	50, 254, 444, 446
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	20, 211
AfaI	GTAC	2 cut(s)	98, 752
AfiI	CCNNNNNNNGG	3 cut(s)	106, 343, 773
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	268, 433, 716
AhdI	GACNNNNNGTC	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	633
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	5 cut(s)	66, 117, 296, 512, 695
AluI	AGCT	5 cut(s)	66, 117, 296, 512, 695
Alw21I	GWGCWC	3 cut(s)	178, 599, 748
AlwI	GGATC	1 cut(s)	625
Ama87I	CYCGRG	2 cut(s)	373, 592
AoxI	GGCC	3 cut(s)	28, 522, 775
ApeKI	GCWGC	5 cut(s)	81, 114, 700, 762, 818
ApoI	RAATTY	2 cut(s)	20, 211
AseI	ATTAAT	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	305, 334, 776
AsuC2I	CCSGG	3 cut(s)	374, 375, 779
AsuHPI	GGTGA	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	373, 592
AvaII	GGWCC	2 cut(s)	305, 334
Bbv12I	GWGCWC	3 cut(s)	178, 599, 748
BbvI	GCAGC	5 cut(s)	93, 126, 687, 774, 805
BccI	CCATC	3 cut(s)	337, 407, 658
BceAI	ACGGC	3 cut(s)	43, 63, 267
BciT130I	CCWGG	1 cut(s)	635
BcnI	CCSGG	3 cut(s)	374, 375, 779
BfaI	CTAG	2 cut(s)	258, 354
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	6 cut(s)	82, 115, 255, 701, 763, 819
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	6 cut(s)	83, 116, 256, 702, 764, 820
Bme1390I	CCNGG	4 cut(s)	374, 375, 635, 779
Bme18I	GGWCC	2 cut(s)	305, 334
BmeRI	GACNNNNNGTC	1 cut(s)	665
BmeT110I	CYCGRG	2 cut(s)	373, 592
BmgT120I	GGNCC	3 cut(s)	305, 334, 776
BmiI	GGNNCC	2 cut(s)	307, 336
BmrFI	CCNGG	4 cut(s)	374, 375, 635, 779
BmsI	GCATC	1 cut(s)	712
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	3 cut(s)	374, 375, 779
Bsa29I	ATCGAT	1 cut(s)	706
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	273, 372, 373, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 343, 773
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	635
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	4 cut(s)	273, 372, 373, 444
BseGI	GGATG	3 cut(s)	45, 650, 770
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	106, 343, 773
BseMII	CTCAG	3 cut(s)	86, 171, 748
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	5 cut(s)	93, 126, 687, 774, 805
Bsh1236I	CGCG	2 cut(s)	446, 742
Bsh1285I	CGRYCG	1 cut(s)	662
BshFI	GGCC	3 cut(s)	30, 524, 777
BshVI	ATCGAT	1 cut(s)	706
BsiEI	CGRYCG	1 cut(s)	662
BsiHKAI	GWGCWC	3 cut(s)	178, 599, 748
BsiHKCI	CYCGRG	2 cut(s)	373, 592
BsiSI	CCGG	4 cut(s)	374, 521, 774, 779
BslFI	GGGAC	2 cut(s)	291, 320
BslI	CCNNNNNNNGG	3 cut(s)	106, 343, 773
BsmFI	GGGAC	2 cut(s)	291, 320
BsnI	GGCC	3 cut(s)	30, 524, 777
BsoBI	CYCGRG	2 cut(s)	373, 592
Bsp1286I	GDGCHC	3 cut(s)	178, 599, 748
Bsp143I	GATC	3 cut(s)	124, 630, 673
Bsp1720I	GCTNAGC	1 cut(s)	734
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	4 cut(s)	50, 254, 444, 446
BspANI	GGCC	3 cut(s)	30, 524, 777
BspCNI	CTCAG	3 cut(s)	85, 172, 747
BspDI	ATCGAT	1 cut(s)	706
BspFNI	CGCG	2 cut(s)	446, 742
BspLI	GGNNCC	2 cut(s)	307, 336
BspPI	GGATC	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	4 cut(s)	273, 372, 373, 444
BssMI	GATC	3 cut(s)	124, 630, 673
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	750
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	5 cut(s)	86, 145, 478, 740, 744
BstDEI	CTNAG	5 cut(s)	72, 180, 472, 612, 734
BstDSI	CCRYGG	2 cut(s)	273, 444
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	45, 650, 770
BstFNI	CGCG	2 cut(s)	446, 742
BstKTI	GATC	3 cut(s)	127, 633, 676
BstMBI	GATC	3 cut(s)	124, 630, 673
BstMCI	CGRYCG	1 cut(s)	662
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 452, 692, 739
BstNI	CCWGG	1 cut(s)	635
BstNSI	RCATGY	6 cut(s)	81, 88, 147, 157, 247, 607
BstSCI	CCNGG	4 cut(s)	372, 373, 633, 777
BstUI	CGCG	2 cut(s)	446, 742
BstV1I	GCAGC	5 cut(s)	93, 126, 687, 774, 805
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	30, 524, 777
BsuTUI	ATCGAT	1 cut(s)	706
BtgI	CCRYGG	2 cut(s)	273, 444
BtsCI	GGATG	3 cut(s)	45, 650, 770
Cac8I	GCNNGC	5 cut(s)	86, 145, 478, 740, 744
Cfr13I	GGNCC	3 cut(s)	305, 334, 776
Cfr42I	CCGCGG	1 cut(s)	447
Cfr9I	CCCGGG	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	97, 751
CviQI	GTAC	2 cut(s)	97, 751
DdeI	CTNAG	5 cut(s)	72, 180, 472, 612, 734
DpnI	GATC	3 cut(s)	126, 632, 675
DpnII	GATC	3 cut(s)	124, 630, 673
DriI	GACNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	324
Eam1105I	GACNNNNNGTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	305, 334
Eco88I	CYCGRG	2 cut(s)	373, 592
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaqI	GGGAC	2 cut(s)	291, 320
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	82, 115, 255, 701, 763, 819
FokI	GGATG	3 cut(s)	52, 637, 757
Fsp4HI	GCNGC	6 cut(s)	82, 115, 255, 701, 763, 819
FspBI	CTAG	2 cut(s)	258, 354
GluI	GCNGC	6 cut(s)	82, 115, 255, 701, 763, 819
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	30, 524, 777
HapII	CCGG	4 cut(s)	374, 521, 774, 779
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	4 cut(s)	130, 350, 562, 708
HpaII	CCGG	4 cut(s)	374, 521, 774, 779
HphI	GGTGA	1 cut(s)	793
Hpy188I	TCNGA	4 cut(s)	16, 75, 129, 195
Hpy188III	TCNNGA	2 cut(s)	134, 237
Hpy99I	CGWCG	2 cut(s)	16, 64
HpyAV	CCTTC	3 cut(s)	104, 451, 777
HpyCH4III	ACNGT	1 cut(s)	750
HpyCH4V	TGCA	4 cut(s)	81, 147, 157, 703
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 452, 692, 739
HpyF3I	CTNAG	5 cut(s)	72, 180, 472, 612, 734
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	124, 630, 673
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	5 cut(s)	93, 126, 687, 774, 805
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	2 cut(s)	258, 354
MalI	GATC	3 cut(s)	126, 632, 675
MboI	GATC	3 cut(s)	124, 630, 673
MboII	GAAGA	3 cut(s)	341, 373, 668
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	178, 599, 748
MluCI	AATT	4 cut(s)	20, 211, 567, 571
MlyI	GAGTC	1 cut(s)	571
MseI	TTAA	2 cut(s)	531, 570
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	4 cut(s)	374, 521, 774, 779
MspR9I	CCNGG	4 cut(s)	374, 375, 635, 779
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	2 cut(s)	446, 742
MwoI	GCNNNNNNNGC	4 cut(s)	90, 452, 692, 739
NciI	CCSGG	3 cut(s)	374, 375, 779
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	124, 630, 673
NlaIV	GGNNCC	2 cut(s)	307, 336
NspI	RCATGY	6 cut(s)	81, 88, 147, 157, 247, 607
PaeI	GCATGC	2 cut(s)	88, 147
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	130, 350, 708
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	6 cut(s)	83, 116, 256, 702, 764, 820
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	307, 336
PspPI	GGNCC	3 cut(s)	305, 334, 776
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	98, 752
RsaNI	GTAC	2 cut(s)	97, 751
RseI	CAYNNNNRTG	1 cut(s)	602
SacII	CCGCGG	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	531, 570
SatI	GCNGC	6 cut(s)	82, 115, 255, 701, 763, 819
Sau3AI	GATC	3 cut(s)	124, 630, 673
Sau96I	GGNCC	3 cut(s)	305, 334, 776
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	4 cut(s)	374, 375, 635, 779
SduI	GDGCHC	3 cut(s)	178, 599, 748
SetI	ASST	8 cut(s)	68, 102, 119, 181, 298, 336, 514, 697
SfaNI	GCATC	1 cut(s)	712
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	305, 334
SmaI	CCCGGG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	2 cut(s)	88, 147
Sse9I	AATT	4 cut(s)	20, 211, 567, 571
SsiI	CCGC	4 cut(s)	50, 254, 444, 446
SspMI	CTAG	2 cut(s)	258, 354
StyD4I	CCNGG	4 cut(s)	372, 373, 633, 777
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	750
TaqI	TCGA	5 cut(s)	5, 62, 238, 658, 706
TaqII	GACCGA	1 cut(s)	676
TasI	AATT	4 cut(s)	20, 211, 567, 571
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	130, 350, 708
Tru1I	TTAA	2 cut(s)	531, 570
Tru9I	TTAA	2 cut(s)	531, 570
TseI	GCWGC	5 cut(s)	81, 114, 700, 762, 818
TspDTI	ATGAA	3 cut(s)	179, 224, 759
TspMI	CCCGGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	305, 334
VspI	ATTAAT	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	2 cut(s)	20, 211
XceI	RCATGY	6 cut(s)	81, 88, 147, 157, 247, 607
XmaI	CCCGGG	1 cut(s)	373
XspI	CTAG	2 cut(s)	258, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.