Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

7600659 .. 7602728

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1096100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCGAGTTCGTCGGAGACTGCGGAGGTTTCAGGCCAGAGAGGGATGAGGACGGCGGAGAAGCCGTCGAACTTCACTCAGACATGCAGCATGCTTTGCCAGTACCTCAAGGAGAAAGGCAGCTTTGGAGATCTGAATCTTGACACGGCATGCAACAACATGCAACAATCTAATGGAGGAACACCTGAGATGTTTCGTCAGAAAGCCCCACCCATGAACTTCTTTCCATTTGTGGAAAATTCTCGGAACATGCCAACGGCGGTTAGAGACTTCAAATCCATGGATTTGTTTCCTCAACAAGCTGGTTTTGGTCCCTCTGCCCCCACTCCCAGAGAAGAGGTCCCCATGACGGCTGATTCTAGTGTGAAGAAATCTGCCCCTGGAGAGCCTCAGAAGGCACAAATGACCATCTTTTATGGTGGACAAGTAATCGTGTTCAACGATTTTCCTGCGGACAAGGCCAAGGAAGTCATGCTCTTAGCAAGCAAGGAGAGTTCTCAGAGCCACACCGCTCCGGCTTCACCTCCGGCCAAGACTAACAACGCCTTTGCCTCTCATTTGGGCAAGAGTCCCGTTAATTCCAGCAGTTCAGTTCCTCCGAGCTCCAACATGTTTCCTAACTTTGGCAATCAAGCGATTCAGGAGGGCGTCAAGCCATCCCCTCGACCCGTTGTTTGTGATCTTCCGATTGCAAGGAAAGCTTCGCTTCATCGATTCCTCGAGAAGAGAAAGGATAGGCTCAACACCCTAGCACCGTACCAAACGAGCAGCCCTGCATCCAGCCCGGCGAAGCCAACCGAAAACAAGTCATGGCTAGGGTTGGCTGCTCAGCAAACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

281

Amino Acids

30.31

Weight (kDa)

9.26

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	129 - 162	5.8e-19	tify domain
Jas_motif	PF09425	229 - 254	1.4e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	512
AciI	CCGC	5 cut(s)	23, 56, 260, 452, 510
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	104, 758
AfiI	CCNNNNNNNGG	2 cut(s)	349, 623
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	274, 439
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	123, 302, 603, 701
AluI	AGCT	4 cut(s)	123, 302, 603, 701
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	11, 261
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	3 cut(s)	34, 459, 528
ApeKI	GCWGC	4 cut(s)	87, 120, 768, 824
ApoI	RAATTY	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	657, 689
AspS9I	GGNCC	2 cut(s)	311, 340
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	1 cut(s)	513
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	311, 340
BanII	GRGCYC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	99, 132, 780, 811
BccI	CCATC	2 cut(s)	416, 664
BceAI	ACGGC	5 cut(s)	49, 69, 162, 273, 366
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	11, 261
BfaI	CTAG	3 cut(s)	360, 749, 815
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	4 cut(s)	88, 121, 769, 825
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	4 cut(s)	89, 122, 770, 826
Bme1390I	CCNGG	2 cut(s)	381, 785
Bme18I	GGWCC	2 cut(s)	311, 340
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	311, 340
BmiI	GGNNCC	2 cut(s)	313, 342
BmrFI	CCNGG	2 cut(s)	381, 785
BmsI	GCATC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	785
Bsa29I	ATCGAT	1 cut(s)	712
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	279, 379, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 623
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	712
BseDI	CCNNGG	3 cut(s)	279, 379, 462
BseGI	GGATG	3 cut(s)	51, 656, 776
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	349, 623
BseMII	CTCAG	5 cut(s)	92, 177, 404, 512, 842
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	99, 132, 780, 811
BshFI	GGCC	3 cut(s)	36, 461, 530
BshVI	ATCGAT	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	515, 527, 785
BslFI	GGGAC	3 cut(s)	297, 326, 555
BslI	CCNNNNNNNGG	2 cut(s)	349, 623
BsmAI	GTCTC	2 cut(s)	11, 261
BsmFI	GGGAC	3 cut(s)	297, 326, 555
BsnI	GGCC	3 cut(s)	36, 461, 530
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	130, 679
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	5 cut(s)	23, 56, 260, 452, 510
BspANI	GGCC	3 cut(s)	36, 461, 530
BspCNI	CTCAG	5 cut(s)	91, 178, 403, 511, 841
BspDI	ATCGAT	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	313, 342
BsrBI	CCGCTC	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	279, 379, 462
BssMI	GATC	2 cut(s)	130, 679
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	279, 462
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	756
Bst6I	CTCTTC	2 cut(s)	330, 719
BstACI	GRCGYC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	92, 151, 484
BstDEI	CTNAG	6 cut(s)	78, 186, 390, 478, 498, 828
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	51, 656, 776
BstKTI	GATC	2 cut(s)	133, 682
BstMAI	GTCTC	2 cut(s)	11, 261
BstMBI	GATC	2 cut(s)	130, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 458, 698
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	6 cut(s)	87, 94, 153, 163, 253, 613
BstSCI	CCNGG	2 cut(s)	379, 783
BstV1I	GCAGC	4 cut(s)	99, 132, 780, 811
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	712
BsuRI	GGCC	3 cut(s)	36, 461, 530
BsuTUI	ATCGAT	1 cut(s)	712
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	51, 656, 776
Cac8I	GCNNGC	3 cut(s)	92, 151, 484
Cfr13I	GGNCC	2 cut(s)	311, 340
ClaI	ATCGAT	1 cut(s)	712
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	103, 757
CviQI	GTAC	2 cut(s)	103, 757
DdeI	CTNAG	6 cut(s)	78, 186, 390, 478, 498, 828
DpnI	GATC	2 cut(s)	132, 681
DpnII	GATC	2 cut(s)	130, 679
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	330, 719
EarI	CTCTTC	2 cut(s)	330, 719
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	279, 462
Eco24I	GRGCYC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	311, 340
Eco53kI	GAGCTC	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	279, 462
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	279, 462
FalI	AAGNNNNNCTT	4 cut(s)	685, 717, 690, 722
FaqI	GGGAC	3 cut(s)	297, 326, 555
Fnu4HI	GCNGC	4 cut(s)	88, 121, 769, 825
FokI	GGATG	3 cut(s)	58, 643, 763
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	4 cut(s)	88, 121, 769, 825
FspBI	CTAG	3 cut(s)	360, 749, 815
GluI	GCNGC	4 cut(s)	88, 121, 769, 825
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	36, 461, 530
HapII	CCGG	3 cut(s)	515, 527, 785
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	648
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	5 cut(s)	136, 356, 568, 637, 714
HpaII	CCGG	3 cut(s)	515, 527, 785
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	9 cut(s)	16, 81, 135, 201, 246, 393, 501, 600, 687
Hpy188III	TCNNGA	3 cut(s)	140, 641, 721
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	16, 70
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	756
HpyCH4V	TGCA	5 cut(s)	87, 153, 163, 692, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 458, 698
HpyF3I	CTNAG	6 cut(s)	78, 186, 390, 478, 498, 828
Hsp92I	GRCGYC	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	130, 679
LmnI	GCTCC	2 cut(s)	517, 608
Lsp1109I	GCAGC	4 cut(s)	99, 132, 780, 811
LweI	GCATC	1 cut(s)	785
MaeI	CTAG	3 cut(s)	360, 749, 815
MalI	GATC	2 cut(s)	132, 681
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	130, 679
MboII	GAAGA	4 cut(s)	347, 379, 674, 736
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	2 cut(s)	238, 577
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	630
MseI	TTAA	1 cut(s)	576
MspI	CCGG	3 cut(s)	515, 527, 785
MspR9I	CCNGG	2 cut(s)	381, 785
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	96, 458, 698
NciI	CCSGG	1 cut(s)	785
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	130, 679
NlaIV	GGNNCC	2 cut(s)	313, 342
NspI	RCATGY	6 cut(s)	87, 94, 153, 163, 253, 613
PaeI	GCATGC	2 cut(s)	94, 153
PaeR7I	CTCGAG	1 cut(s)	719
PciI	ACATGT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	136, 356, 637, 714
PkrI	GCNGC	4 cut(s)	89, 122, 770, 826
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	340
PscI	ACATGT	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	313, 342
PspPI	GGNCC	2 cut(s)	311, 340
PspPPI	RGGWCCY	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	104, 758
RsaNI	GTAC	2 cut(s)	103, 757
SacI	GAGCTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	4 cut(s)	88, 121, 769, 825
Sau3AI	GATC	2 cut(s)	130, 679
Sau96I	GGNCC	2 cut(s)	311, 340
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	381, 785
SduI	GDGCHC	1 cut(s)	605
SetI	ASST	9 cut(s)	30, 108, 125, 187, 304, 342, 526, 605, 703
SfaNI	GCATC	1 cut(s)	785
Sfr274I	CTCGAG	1 cut(s)	719
SinI	GGWCC	2 cut(s)	311, 340
SlaI	CTCGAG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	107, 719
SmoI	CTYRAG	2 cut(s)	107, 719
SphI	GCATGC	2 cut(s)	94, 153
Sse9I	AATT	2 cut(s)	238, 577
SsiI	CCGC	5 cut(s)	23, 56, 260, 452, 510
SspMI	CTAG	3 cut(s)	360, 749, 815
SstI	GAGCTC	1 cut(s)	605
StyD4I	CCNGG	2 cut(s)	379, 783
StyI	CCWWGG	2 cut(s)	279, 462
TaaI	ACNGT	1 cut(s)	756
TaqI	TCGA	5 cut(s)	5, 68, 664, 712, 720
TasI	AATT	2 cut(s)	238, 577
TfiI	GAWTC	4 cut(s)	136, 356, 637, 714
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseI	GCWGC	4 cut(s)	87, 120, 768, 824
TspDTI	ATGAA	2 cut(s)	230, 698
VpaK11BI	GGWCC	2 cut(s)	311, 340
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	6 cut(s)	87, 94, 153, 163, 253, 613
XhoI	CTCGAG	1 cut(s)	719
XspI	CTAG	3 cut(s)	360, 749, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.