Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

8064012 .. 8066242

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCGAGCTCGTCGGAAGCCACCGAGATGATGATGAGAATGGCGGAGAAGCCACCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAAGGTGCCAACTTGGGAGATCTGAACCTTGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCACCAGAAGACCCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGACCTCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCGGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAGAGCTCCAAGAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGCCAACACCAACTCTGCTTTTGCCTCTCATTTGGGGAAGGTTCCGATCAATTCCGGCACCGGCACCGCCCCGGTTGCTCCGAGCTCAAACCCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGGTACTTTTTCGGAACTAGTCACTCTGTCTCGATATGAAGCAATGCTATGTGTAACATGTTTTGATGAATCGTATTGGTTTCTATCTCATTGCAGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCGAAGAGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

272

Amino Acids

29.89

Weight (kDa)

6.6

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	116 - 149	1.3e-19	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	107, 554, 560
AciI	CCGC	2 cut(s)	44, 564
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	2 cut(s)	256, 792
AhlI	ACTAGT	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	340, 799
AluBI	AGCT	5 cut(s)	9, 142, 284, 456, 582
AluI	AGCT	5 cut(s)	9, 142, 284, 456, 582
Alw21I	GWGCWC	3 cut(s)	11, 458, 584
Alw26I	GTCTC	2 cut(s)	623, 699
AoxI	GGCC	2 cut(s)	357, 498
ApeKI	GCWGC	2 cut(s)	139, 473
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	3 cut(s)	293, 337, 358
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	167, 176, 442
AvaII	GGWCC	2 cut(s)	293, 337
BanI	GGYRCC	3 cut(s)	107, 554, 560
BanII	GRGCYC	4 cut(s)	11, 351, 458, 584
BbsI	GAAGAC	2 cut(s)	188, 338
Bbv12I	GWGCWC	3 cut(s)	11, 458, 584
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	151, 460
BccI	CCATC	3 cut(s)	377, 641, 665
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	342, 801
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	623, 699
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	2 cut(s)	321, 683
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	140, 474
BlsI	GCNGC	2 cut(s)	141, 475
Bme1390I	CCNGG	3 cut(s)	342, 569, 801
Bme18I	GGWCC	2 cut(s)	293, 337
BmgT120I	GGNCC	3 cut(s)	293, 337, 358
BmiI	GGNNCC	7 cut(s)	109, 237, 339, 348, 540, 556, 562
BmrFI	CCNGG	3 cut(s)	342, 569, 801
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	188, 338
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BsaWI	WCCGGW	2 cut(s)	205, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	2 cut(s)	232, 557
Bse1I	ACTGG	2 cut(s)	57, 88
Bse3DI	GCAATG	2 cut(s)	714, 754
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	342, 801
BseDI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	2 cut(s)	714, 754
BseMII	CTCAG	2 cut(s)	290, 405
BseNI	ACTGG	2 cut(s)	57, 88
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	151, 460
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	359, 500
BshNI	GGYRCC	3 cut(s)	107, 554, 560
BsiHKAI	GWGCWC	3 cut(s)	11, 458, 584
BsiSI	CCGG	7 cut(s)	206, 233, 410, 491, 552, 558, 569
BslFI	GGGAC	3 cut(s)	263, 323, 639
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	623, 699
BsmFI	GGGAC	3 cut(s)	263, 323, 639
BsnI	GGCC	2 cut(s)	359, 500
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	4 cut(s)	11, 351, 458, 584
Bsp143I	GATC	2 cut(s)	121, 543
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	44, 564
BspANI	GGCC	2 cut(s)	359, 500
BspCNI	CTCAG	2 cut(s)	289, 406
BspLI	GGNNCC	7 cut(s)	109, 237, 339, 348, 540, 556, 562
BspT107I	GGYRCC	3 cut(s)	107, 554, 560
BspTNI	GGTCTC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	714, 754
BsrFI	RCCGGY	2 cut(s)	232, 557
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	2 cut(s)	232, 557
BssECI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BssMI	GATC	2 cut(s)	121, 543
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	342, 801
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	801
BstC8I	GCNNGC	4 cut(s)	80, 234, 282, 445
BstDEI	CTNAG	3 cut(s)	276, 414, 439
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	124, 546
BstMAI	GTCTC	2 cut(s)	623, 699
BstMBI	GATC	2 cut(s)	121, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
BstNI	CCWGG	2 cut(s)	342, 801
BstNSI	RCATGY	3 cut(s)	82, 139, 726
BstSCI	CCNGG	3 cut(s)	340, 567, 799
BstV1I	GCAGC	2 cut(s)	151, 460
BstV2I	GAAGAC	2 cut(s)	188, 338
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	359, 500
BtgI	CCRYGG	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	80, 234, 282, 445
Cfr10I	RCCGGY	2 cut(s)	232, 557
Cfr13I	GGNCC	3 cut(s)	293, 337, 358
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	6 cut(s)	79, 136, 211, 262, 479, 723
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	3 cut(s)	276, 414, 439
DpnI	GATC	2 cut(s)	123, 545
DpnII	GATC	2 cut(s)	121, 543
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	3 cut(s)	9, 456, 582
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	4 cut(s)	11, 351, 458, 584
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	293, 337
Eco53kI	GAGCTC	3 cut(s)	9, 456, 582
EcoICRI	GAGCTC	3 cut(s)	9, 456, 582
EcoRII	CCWGG	2 cut(s)	340, 799
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	4 cut(s)	11, 351, 458, 584
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	82, 139, 214, 265, 482, 726
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FaqI	GGGAC	3 cut(s)	263, 323, 639
FatI	CATG	6 cut(s)	78, 135, 210, 261, 478, 722
Fnu4HI	GCNGC	2 cut(s)	140, 474
FriOI	GRGCYC	4 cut(s)	11, 351, 458, 584
Fsp4HI	GCNGC	2 cut(s)	140, 474
FspBI	CTAG	2 cut(s)	321, 683
GluI	GCNGC	2 cut(s)	140, 474
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	359, 500
HapII	CCGG	7 cut(s)	206, 233, 410, 491, 552, 558, 569
Hin1II	CATG	6 cut(s)	82, 139, 214, 265, 482, 726
HinfI	GANTC	5 cut(s)	241, 317, 616, 649, 734
HpaII	CCGG	7 cut(s)	206, 233, 410, 491, 552, 558, 569
HphI	GGTGA	3 cut(s)	167, 176, 442
Hpy188I	TCNGA	8 cut(s)	16, 69, 126, 240, 246, 543, 579, 679
Hpy188III	TCNNGA	1 cut(s)	696
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	412, 529, 773, 806
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	139, 759, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
HpyF3I	CTNAG	3 cut(s)	276, 414, 439
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	82, 139, 214, 265, 482, 726
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 543
LmnI	GCTCC	6 cut(s)	147, 241, 346, 461, 493, 580
Lsp1109I	GCAGC	2 cut(s)	151, 460
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	321, 683
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	685, 718
MalI	GATC	2 cut(s)	123, 545
MboI	GATC	2 cut(s)	121, 543
MboII	GAAGA	5 cut(s)	193, 340, 343, 364, 818
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	11, 351, 458, 584
MluCI	AATT	2 cut(s)	196, 547
MlyI	GAGTC	2 cut(s)	250, 643
MnlI	CCTC	9 cut(s)	104, 216, 240, 285, 306, 309, 421, 532, 802
MroNI	GCCGGC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	7 cut(s)	206, 233, 410, 491, 552, 558, 569
MspR9I	CCNGG	3 cut(s)	342, 569, 801
MvaI	CCWGG	2 cut(s)	342, 801
MwoI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	121, 543
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	82, 139, 214, 265, 482, 726
NlaIV	GGNNCC	7 cut(s)	109, 237, 339, 348, 540, 556, 562
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	3 cut(s)	82, 139, 726
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	341
PciI	ACATGT	1 cut(s)	722
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	317, 616, 734
PkrI	GCNGC	2 cut(s)	141, 475
PleI	GAGTC	2 cut(s)	249, 643
PpsI	GAGTC	2 cut(s)	249, 643
PscI	ACATGT	1 cut(s)	722
Psp124BI	GAGCTC	3 cut(s)	11, 458, 584
Psp6I	CCWGG	2 cut(s)	340, 799
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	340, 799
PspN4I	GGNNCC	7 cut(s)	109, 237, 339, 348, 540, 556, 562
PspPI	GGNCC	3 cut(s)	293, 337, 358
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	3 cut(s)	11, 458, 584
SatI	GCNGC	2 cut(s)	140, 474
Sau3AI	GATC	2 cut(s)	121, 543
Sau96I	GGNCC	3 cut(s)	293, 337, 358
SchI	GAGTC	2 cut(s)	250, 643
ScrFI	CCNGG	3 cut(s)	342, 569, 801
SduI	GDGCHC	4 cut(s)	11, 351, 458, 584
SfaNI	GCATC	1 cut(s)	423
SinI	GGWCC	2 cut(s)	293, 337
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	682
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	196, 547
SsiI	CCGC	2 cut(s)	44, 564
SspMI	CTAG	2 cut(s)	321, 683
SstI	GAGCTC	3 cut(s)	11, 458, 584
StyD4I	CCNGG	3 cut(s)	340, 567, 799
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	5, 399, 697
TasI	AATT	2 cut(s)	196, 547
TfiI	GAWTC	3 cut(s)	317, 616, 734
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	139, 473
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	209, 717, 747
VpaK11BI	GGWCC	2 cut(s)	293, 337
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	3 cut(s)	82, 139, 726
XspI	CTAG	2 cut(s)	321, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.