Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

4797347 .. 4799457

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCGAGCTCGTCGGAAATGAGAACGGCGGAGAAGGCCCCGAGTTTTACTCAGACTTGTAGCATGCTGTACCAGTACCTGAAAGAGAAGGGTCAGGTGGGAGATCTGAACCTCGTCGACATGCAGTTCCCTCATGTCAATAATGGGAGTGGTGAGATTTTCCGGCAGAGGGCTCAGCAGCAACAGCAGCCGATGAAATTTTTTCCGGTGATGGAGAAACCGAGGAATGTTCCGGCGGCTCCCAGAGGCTTCAAATCCAGGGATTTGTTTCCTCAGCAAGCTGGATTTGGGTCTTCTCTCCCCAAGATGAGTGATTTCTTGGGTGATTTTAGTACTGTGAAGAAGACTTTGCCCCAGAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTCGTTGTGTTTGACGATTTTCCAGCTGAGAAGGCCAAGGAGGTGATGCTGTTGGCTAGCAAGGAAAGCTCCAAGAGCCACCAGATGGCTCAGGTTTCTGCTCCGGTGAAGACCAACACCACAACTATTTTTGGTACTCAATTTGGGAAGGCTCCGATCAATTCTGGCACCGCCCCGGTGGTTCCTCCGAGCTCAAATTCTTTCCCCAATCAATTTGGGAAGGCTCCGATCAATTCCGGCACCGCTGCGGTGGTTCCTCCGAGCTCAAATTCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAGCAGGAGGCCATCAAGCCAACCCCCACTCGTCCCGTCATTACTGATATACCAATGCAAAGGAAAGCTTCACTGCAGCGCTTCCTGGCTAAGAGAAAGGATAGGATGAACAACCTGGCTCCCTACCAAATGAGCATCGCTGGTCTTTCCGCCCCTTCAAAGCCGGCAGCCGATGGCAAGTCATGGTTAGGCTTGGCAGCTCTCCCAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

303

Amino Acids

32.92

Weight (kDa)

10.0

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	118 - 150	1.5e-19	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	557, 629
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	6 cut(s)	29, 236, 561, 633, 638, 843
AcsI	RAATTY	3 cut(s)	197, 586, 658
AfaI	GTAC	4 cut(s)	71, 77, 334, 526
AfeI	AGCGCT	1 cut(s)	773
AfiI	CCNNNNNNNGG	3 cut(s)	169, 475, 674
AgsI	TTSAA	2 cut(s)	253, 852
AjnI	CCWGG	3 cut(s)	257, 777, 807
AluBI	AGCT	8 cut(s)	9, 281, 416, 459, 582, 654, 761, 893
AluI	AGCT	8 cut(s)	9, 281, 416, 459, 582, 654, 761, 893
Alw21I	GWGCWC	3 cut(s)	11, 584, 656
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	773
AoxI	GGCC	4 cut(s)	36, 360, 423, 702
ApeKI	GCWGC	7 cut(s)	178, 187, 635, 694, 769, 860, 890
ApoI	RAATTY	3 cut(s)	197, 586, 658
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	37, 361
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	5 cut(s)	164, 220, 335, 445, 508
AsuNHI	GCTAGC	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	40
BanI	GGYRCC	2 cut(s)	557, 629
BanII	GRGCYC	4 cut(s)	11, 175, 584, 656
BbsI	GAAGAC	3 cut(s)	285, 350, 506
Bbv12I	GWGCWC	3 cut(s)	11, 584, 656
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	7 cut(s)	190, 199, 622, 706, 781, 872, 902
BccI	CCATC	5 cut(s)	205, 380, 469, 713, 860
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	259, 779, 809
BcnI	CCSGG	1 cut(s)	566
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	775
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	8 cut(s)	179, 188, 237, 636, 695, 770, 861, 891
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	8 cut(s)	180, 189, 238, 637, 696, 771, 862, 892
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	4 cut(s)	259, 566, 779, 809
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	37, 361
BmiI	GGNNCC	9 cut(s)	39, 240, 543, 559, 573, 615, 631, 645, 813
BmrFI	CCNGG	4 cut(s)	259, 566, 779, 809
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	2 cut(s)	426, 837
BmtI	GCTAGC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	3 cut(s)	285, 350, 506
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	2 cut(s)	273, 480
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	221, 258, 426, 564
BsaWI	WCCGGW	2 cut(s)	205, 493
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 475, 674
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	2 cut(s)	73, 904
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	3 cut(s)	259, 779, 809
BseDI	CCNNGG	4 cut(s)	221, 258, 426, 564
BseGI	GGATG	1 cut(s)	804
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	169, 475, 674
BseMII	CTCAG	5 cut(s)	65, 188, 287, 408, 494
BseNI	ACTGG	2 cut(s)	73, 904
BseXI	GCAGC	7 cut(s)	190, 199, 622, 706, 781, 872, 902
BshFI	GGCC	4 cut(s)	38, 362, 425, 704
BshNI	GGYRCC	2 cut(s)	557, 629
BsiHKAI	GWGCWC	3 cut(s)	11, 584, 656
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	7 cut(s)	163, 206, 233, 494, 566, 627, 857
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	3 cut(s)	169, 475, 674
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	4 cut(s)	38, 362, 425, 704
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	4 cut(s)	11, 175, 584, 656
Bsp143I	GATC	3 cut(s)	103, 546, 618
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	6 cut(s)	29, 236, 561, 633, 638, 843
BspANI	GGCC	4 cut(s)	38, 362, 425, 704
BspCNI	CTCAG	5 cut(s)	64, 187, 286, 409, 493
BspLI	GGNNCC	9 cut(s)	39, 240, 543, 559, 573, 615, 631, 645, 813
BspMAI	CTGCAG	1 cut(s)	771
BspOI	GCTAGC	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	557, 629
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	2 cut(s)	73, 904
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	4 cut(s)	221, 258, 426, 564
BssMI	GATC	3 cut(s)	103, 546, 618
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	3 cut(s)	259, 779, 809
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	65, 279, 448, 858
BstDEI	CTNAG	6 cut(s)	51, 174, 273, 417, 480, 783
BstF5I	GGATG	1 cut(s)	804
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	3 cut(s)	106, 549, 621
BstMBI	GATC	3 cut(s)	103, 546, 618
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 184, 187, 422, 456, 465
BstNI	CCWGG	3 cut(s)	259, 779, 809
BstNSI	RCATGY	2 cut(s)	67, 124
BstSCI	CCNGG	4 cut(s)	257, 564, 777, 807
BstSFI	CTRYAG	1 cut(s)	767
BstV1I	GCAGC	7 cut(s)	190, 199, 622, 706, 781, 872, 902
BstV2I	GAAGAC	3 cut(s)	285, 350, 506
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	38, 362, 425, 704
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	1 cut(s)	804
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	4 cut(s)	65, 279, 448, 858
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	2 cut(s)	37, 361
Csp6I	GTAC	4 cut(s)	70, 76, 333, 525
CviAII	CATG	4 cut(s)	64, 121, 134, 876
CviQI	GTAC	4 cut(s)	70, 76, 333, 525
DdeI	CTNAG	6 cut(s)	51, 174, 273, 417, 480, 783
DpnI	GATC	3 cut(s)	105, 548, 620
DpnII	GATC	3 cut(s)	103, 546, 618
EciI	GGCGGA	2 cut(s)	44, 832
Ecl136II	GAGCTC	3 cut(s)	9, 582, 654
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	4 cut(s)	11, 175, 584, 656
Eco47III	AGCGCT	1 cut(s)	773
Eco53kI	GAGCTC	3 cut(s)	9, 582, 654
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	3 cut(s)	9, 582, 654
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	257, 777, 807
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	4 cut(s)	11, 175, 584, 656
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	67, 124, 137, 879
FaiI	YATR	6 cut(s)	65, 122, 135, 381, 743, 877
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	4 cut(s)	63, 120, 133, 875
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	8 cut(s)	179, 188, 237, 636, 695, 770, 861, 891
FokI	GGATG	1 cut(s)	811
FriOI	GRGCYC	4 cut(s)	11, 175, 584, 656
Fsp4HI	GCNGC	8 cut(s)	179, 188, 237, 636, 695, 770, 861, 891
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	8 cut(s)	179, 188, 237, 636, 695, 770, 861, 891
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	4 cut(s)	38, 362, 425, 704
HapII	CCGG	7 cut(s)	163, 206, 233, 494, 566, 627, 857
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	4 cut(s)	67, 124, 137, 879
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	759
HinfI	GANTC	1 cut(s)	688
HpaII	CCGG	7 cut(s)	163, 206, 233, 494, 566, 627, 857
HphI	GGTGA	5 cut(s)	164, 220, 335, 445, 508
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	16, 54, 108, 546, 579, 618, 651
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	16, 119
HpyAV	CCTTC	7 cut(s)	28, 82, 352, 415, 532, 604, 858
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	124, 751, 769
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 184, 187, 422, 456, 465
HpyF3I	CTNAG	6 cut(s)	51, 174, 273, 417, 480, 783
Hsp92II	CATG	4 cut(s)	67, 124, 137, 879
HspAI	GCGC	1 cut(s)	772
KroI	GCCGGC	1 cut(s)	856
KroNI	GCCGGC	1 cut(s)	858
Kzo9I	GATC	3 cut(s)	103, 546, 618
LmnI	GCTCC	6 cut(s)	244, 464, 496, 547, 619, 817
Lsp1109I	GCAGC	7 cut(s)	190, 199, 622, 706, 781, 872, 902
LweI	GCATC	2 cut(s)	426, 837
MaeI	CTAG	1 cut(s)	447
MalI	GATC	3 cut(s)	105, 548, 620
MboI	GATC	3 cut(s)	103, 546, 618
MboII	GAAGA	5 cut(s)	285, 352, 355, 367, 511
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	4 cut(s)	11, 175, 584, 656
MluCI	AATT	7 cut(s)	197, 530, 550, 586, 602, 622, 658
MroNI	GCCGGC	1 cut(s)	856
MspA1I	CMGCKG	2 cut(s)	416, 635
MspI	CCGG	7 cut(s)	163, 206, 233, 494, 566, 627, 857
MspR9I	CCNGG	4 cut(s)	259, 566, 779, 809
MvaI	CCWGG	3 cut(s)	259, 779, 809
MwoI	GCNNNNNNNGC	6 cut(s)	35, 184, 187, 422, 456, 465
NaeI	GCCGGC	1 cut(s)	858
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	103, 546, 618
NgoMIV	GCCGGC	1 cut(s)	856
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	4 cut(s)	67, 124, 137, 879
NlaIV	GGNNCC	9 cut(s)	39, 240, 543, 559, 573, 615, 631, 645, 813
NspI	RCATGY	2 cut(s)	67, 124
PaeI	GCATGC	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	688
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	8 cut(s)	180, 189, 238, 637, 696, 771, 862, 892
Psp124BI	GAGCTC	3 cut(s)	11, 584, 656
Psp6I	CCWGG	3 cut(s)	257, 777, 807
PspGI	CCWGG	3 cut(s)	257, 777, 807
PspN4I	GGNNCC	9 cut(s)	39, 240, 543, 559, 573, 615, 631, 645, 813
PspPI	GGNCC	2 cut(s)	37, 361
PstI	CTGCAG	1 cut(s)	771
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	4 cut(s)	71, 77, 334, 526
RsaNI	GTAC	4 cut(s)	70, 76, 333, 525
SacI	GAGCTC	3 cut(s)	11, 584, 656
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	8 cut(s)	179, 188, 237, 636, 695, 770, 861, 891
Sau3AI	GATC	3 cut(s)	103, 546, 618
Sau96I	GGNCC	2 cut(s)	37, 361
ScaI	AGTACT	1 cut(s)	334
ScrFI	CCNGG	4 cut(s)	259, 566, 779, 809
SduI	GDGCHC	4 cut(s)	11, 175, 584, 656
SfaNI	GCATC	2 cut(s)	426, 837
SfcI	CTRYAG	1 cut(s)	767
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	7 cut(s)	197, 530, 550, 586, 602, 622, 658
SsiI	CCGC	6 cut(s)	29, 236, 561, 633, 638, 843
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	3 cut(s)	11, 584, 656
StyD4I	CCNGG	4 cut(s)	257, 564, 777, 807
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	5, 117
TasI	AATT	7 cut(s)	197, 530, 550, 586, 602, 622, 658
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	688
TscAI	CASTG	1 cut(s)	771
TseI	GCWGC	7 cut(s)	178, 187, 635, 694, 769, 860, 890
TspDTI	ATGAA	2 cut(s)	209, 815
TspRI	CASTG	1 cut(s)	771
Van91I	CCANNNNNTGG	1 cut(s)	475
XapI	RAATTY	3 cut(s)	197, 586, 658
XceI	RCATGY	2 cut(s)	67, 124
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.