Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

7737556 .. 7738837

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCGAGCTCGTCGGAAACCACCGAGACGATGATGAGAATGGCGGAGAAGCCGCCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAAGGTGCCAACTTGGGAGATCTGAACCTCGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCGCCAGAAGACCCAGCAGATGAAGTTCTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGGCCTCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCAGCTGAGAAGGCAAAGGAGGTGATGCTCTTGGCAAGCAAGGAAAGCTCCAAGAGCCACCACGCTGCACATGTTTCTGGTCCGGCCAACTCTGCTTTTGCCTCTCATTTGGGGAAGGTTCCGATCAACTCCGGCACCGGCACCGGCACCGCCCCGGTTGCTCCGAGCTCAAACCCTTTCCCCGAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATATCTGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCAAAGAGGAAGGATAGGATTAACAGCACGGCTCCATACCAAATGAGCAGCCCCGGTCCTTCAGGCCCTGCAAAGCCGGAAGCTGAAAGCAGGTCATGGTTAGGCTTGGCAGCTCAGCCAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

275

Amino Acids

29.89

Weight (kDa)

9.54

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	114 - 147	1.3e-19	tify domain
Jas_motif	PF09425	221 - 246	2.3e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	777
AccB1I	GGYRCC	4 cut(s)	107, 536, 542, 548
AciI	CCGC	3 cut(s)	44, 53, 552
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	741
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	250, 686
AjnI	CCWGG	2 cut(s)	334, 693
AluBI	AGCT	8 cut(s)	9, 142, 278, 407, 450, 570, 779, 809
AluI	AGCT	8 cut(s)	9, 142, 278, 407, 450, 570, 779, 809
Alw21I	GWGCWC	2 cut(s)	11, 572
Alw26I	GTCTC	2 cut(s)	20, 611
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	287, 351, 486, 760
ApeKI	GCWGC	4 cut(s)	139, 467, 744, 806
AspS9I	GGNCC	6 cut(s)	287, 331, 352, 482, 752, 761
AsuC2I	CCSGG	2 cut(s)	557, 750
AsuHPI	GGTGA	2 cut(s)	176, 436
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	331, 482, 752
BanI	GGYRCC	4 cut(s)	107, 536, 542, 548
BanII	GRGCYC	3 cut(s)	11, 345, 572
BbsI	GAAGAC	2 cut(s)	188, 332
Bbv12I	GWGCWC	2 cut(s)	11, 572
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	151, 454, 756, 818
BccI	CCATC	3 cut(s)	371, 629, 653
BceAI	ACGGC	1 cut(s)	741
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	336, 695
BcnI	CCSGG	2 cut(s)	557, 750
BcoDI	GTCTC	2 cut(s)	20, 611
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	777
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	5 cut(s)	53, 140, 468, 745, 807
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	5 cut(s)	54, 141, 469, 746, 808
Bme1390I	CCNGG	4 cut(s)	336, 557, 695, 750
Bme18I	GGWCC	3 cut(s)	331, 482, 752
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	6 cut(s)	287, 331, 352, 482, 752, 761
BmiI	GGNNCC	9 cut(s)	109, 237, 333, 342, 522, 538, 544, 550, 729
BmrFI	CCNGG	4 cut(s)	336, 557, 695, 750
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	188, 332
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	557, 750
BsaBI	GATNNNNATC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 555, 748
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	3 cut(s)	232, 539, 545
Bse1I	ACTGG	2 cut(s)	57, 88
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	2 cut(s)	336, 695
BseDI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 555, 748
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	3 cut(s)	284, 399, 824
BseNI	ACTGG	2 cut(s)	57, 88
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	151, 454, 756, 818
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	289, 353, 488, 762
BshNI	GGYRCC	4 cut(s)	107, 536, 542, 548
BsiHKAI	GWGCWC	2 cut(s)	11, 572
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	9 cut(s)	206, 233, 485, 534, 540, 546, 557, 750, 773
BslFI	GGGAC	3 cut(s)	257, 317, 627
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	20, 611
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	3 cut(s)	257, 317, 627
BsnI	GGCC	4 cut(s)	289, 353, 488, 762
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	3 cut(s)	11, 345, 572
Bsp143I	GATC	2 cut(s)	121, 525
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	44, 53, 552
BspANI	GGCC	4 cut(s)	289, 353, 488, 762
BspCNI	CTCAG	3 cut(s)	283, 400, 823
BspLI	GGNNCC	9 cut(s)	109, 237, 333, 342, 522, 538, 544, 550, 729
BspMI	ACCTGC	1 cut(s)	777
BspT107I	GGYRCC	4 cut(s)	107, 536, 542, 548
BspTNI	GGTCTC	1 cut(s)	611
BsrFI	RCCGGY	3 cut(s)	232, 539, 545
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	3 cut(s)	232, 539, 545
BssECI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 555, 748
BssMI	GATC	2 cut(s)	121, 525
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	336, 695
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	80, 234, 276, 439
BstDEI	CTNAG	4 cut(s)	270, 408, 810, 819
BstDSI	CCRYGG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	124, 528
BstMAI	GTCTC	2 cut(s)	20, 611
BstMBI	GATC	2 cut(s)	121, 525
BstMWI	GCNNNNNNNGC	6 cut(s)	295, 413, 447, 456, 494, 560
BstNI	CCWGG	2 cut(s)	336, 695
BstNSI	RCATGY	3 cut(s)	82, 139, 476
BstSCI	CCNGG	4 cut(s)	334, 555, 693, 748
BstV1I	GCAGC	4 cut(s)	151, 454, 756, 818
BstV2I	GAAGAC	2 cut(s)	188, 332
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	289, 353, 488, 762
BtgI	CCRYGG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	4 cut(s)	80, 234, 276, 439
CaiI	CAGNNNCTG	1 cut(s)	764
Cfr10I	RCCGGY	3 cut(s)	232, 539, 545
Cfr13I	GGNCC	6 cut(s)	287, 331, 352, 482, 752, 761
CviAII	CATG	6 cut(s)	79, 136, 211, 256, 473, 792
DdeI	CTNAG	4 cut(s)	270, 408, 810, 819
DpnI	GATC	2 cut(s)	123, 527
DpnII	GATC	2 cut(s)	121, 525
EaeI	YGGCCR	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	2 cut(s)	9, 570
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	3 cut(s)	11, 345, 572
Eco31I	GGTCTC	1 cut(s)	611
Eco47I	GGWCC	3 cut(s)	331, 482, 752
Eco53kI	GAGCTC	2 cut(s)	9, 570
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	2 cut(s)	9, 570
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	334, 693
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	3 cut(s)	11, 345, 572
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	6 cut(s)	82, 139, 214, 259, 476, 795
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	3 cut(s)	257, 317, 627
FatI	CATG	6 cut(s)	78, 135, 210, 255, 472, 791
Fnu4HI	GCNGC	5 cut(s)	53, 140, 468, 745, 807
FriOI	GRGCYC	3 cut(s)	11, 345, 572
Fsp4HI	GCNGC	5 cut(s)	53, 140, 468, 745, 807
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	5 cut(s)	53, 140, 468, 745, 807
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	4 cut(s)	289, 353, 488, 762
HapII	CCGG	9 cut(s)	206, 233, 485, 534, 540, 546, 557, 750, 773
Hin1II	CATG	6 cut(s)	82, 139, 214, 259, 476, 795
HinfI	GANTC	3 cut(s)	311, 604, 637
HpaII	CCGG	9 cut(s)	206, 233, 485, 534, 540, 546, 557, 750, 773
HphI	GGTGA	2 cut(s)	176, 436
Hpy188I	TCNGA	7 cut(s)	16, 69, 126, 240, 525, 567, 655
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	406, 511, 667, 700, 765
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	139, 470, 667, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	295, 413, 447, 456, 494, 560
HpyF3I	CTNAG	4 cut(s)	270, 408, 810, 819
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	82, 139, 214, 259, 476, 795
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 525
LmnI	GCTCC	6 cut(s)	147, 241, 340, 455, 568, 733
Lsp1109I	GCAGC	4 cut(s)	151, 454, 756, 818
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	123, 527
MboI	GATC	2 cut(s)	121, 525
MboII	GAAGA	4 cut(s)	193, 334, 337, 358
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	11, 345, 572
MlyI	GAGTC	1 cut(s)	631
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	9 cut(s)	206, 233, 485, 534, 540, 546, 557, 750, 773
MspR9I	CCNGG	4 cut(s)	336, 557, 695, 750
MvaI	CCWGG	2 cut(s)	336, 695
MwoI	GCNNNNNNNGC	6 cut(s)	295, 413, 447, 456, 494, 560
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	557, 750
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	121, 525
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	82, 139, 214, 259, 476, 795
NlaIV	GGNNCC	9 cut(s)	109, 237, 333, 342, 522, 538, 544, 550, 729
NspI	RCATGY	3 cut(s)	82, 139, 476
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	335
PciI	ACATGT	1 cut(s)	472
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	311, 604
PkrI	GCNGC	5 cut(s)	54, 141, 469, 746, 808
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PscI	ACATGT	1 cut(s)	472
Psp124BI	GAGCTC	2 cut(s)	11, 572
Psp6I	CCWGG	2 cut(s)	334, 693
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	334, 693
PspN4I	GGNNCC	9 cut(s)	109, 237, 333, 342, 522, 538, 544, 550, 729
PspPI	GGNCC	6 cut(s)	287, 331, 352, 482, 752, 761
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	11, 572
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	5 cut(s)	53, 140, 468, 745, 807
Sau3AI	GATC	2 cut(s)	121, 525
Sau96I	GGNCC	6 cut(s)	287, 331, 352, 482, 752, 761
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	4 cut(s)	336, 557, 695, 750
SduI	GDGCHC	3 cut(s)	11, 345, 572
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	3 cut(s)	331, 482, 752
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
SsiI	CCGC	3 cut(s)	44, 53, 552
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	2 cut(s)	11, 572
StyD4I	CCNGG	4 cut(s)	334, 555, 693, 748
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	5, 132, 393
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	311, 604
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TseI	GCWGC	4 cut(s)	139, 467, 744, 806
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	331, 482, 752
XceI	RCATGY	3 cut(s)	82, 139, 476
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.