AT1G19740

ATP-dependent protease La (LON) domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008497
Physical Location & Seq
Forward (+)
6824246 .. 6825459
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19740.1

Sequence Viewer

Length: 837 bp
ATGGCGCTTCCAAGCACTGTCTCATCTCCTTCCTTCAAATCAACTCCACCTTATCTCTCCGCCTTCAACCCTAAACCTCTACATCTTCCAGCTACTTACCGGAGCATCAACCGTCGAAGCTGTAAACTCCTCTCCTTCCGTTGCTCATCCTCTTCCTTCTCCGAGAAACACCACAACAACGCGAATCCACCCAAATCAGATGACTTAGTCGAGCTTCCTCTATTTCCACTACCTCTCGTTCTCTTCCCAGGCGCAACAATCCCGCTTCAGATCTTCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGCTAGGTTAAAGAGAGAGAGGGAGACGCTGAGGAATACACTCAATTATTTGACGGCAGCTTCTGCTGTGAAAGATGTGTTCCCATCGCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

278

Amino Acids

31.37

Weight (kDa)

8.3

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 71 - 257 7.2e-30 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 339, 414
AccII CGCG 2 cut(s) 182, 497
AciI CCGC 4 cut(s) 60, 263, 363, 740
AclWI GGATC 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 478
AgsI TTSAA 6 cut(s) 37, 67, 515, 607, 692, 731
AjiI CACGTC 1 cut(s) 507
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 7 cut(s) 92, 120, 214, 368, 698, 727, 800
AluI AGCT 7 cut(s) 92, 120, 214, 368, 698, 727, 800
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 2 cut(s) 25, 758
AlwI GGATC 1 cut(s) 642
AlwNI CAGNNNCTG 2 cut(s) 637, 803
ApeKI GCWGC 4 cut(s) 365, 709, 797, 829
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 2 cut(s) 7, 254
AsuHPI GGTGA 2 cut(s) 454, 542
BanII GRGCYC 1 cut(s) 700
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 700
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 3 cut(s) 377, 721, 809
BccI CCATC 2 cut(s) 697, 832
BceAI ACGGC 2 cut(s) 753, 810
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 25, 758
BfaI CTAG 2 cut(s) 410, 744
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 270
BisI GCNGC 5 cut(s) 366, 710, 741, 798, 830
BlsI GCNGC 5 cut(s) 367, 711, 742, 799, 831
Bme1390I CCNGG 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 114, 288, 368
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 770
Bsa29I ATCGAT 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 2 cut(s) 99, 527
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 1 cut(s) 726
BseBI CCWGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 2 cut(s) 146, 383
BseMII CTCAG 4 cut(s) 337, 629, 644, 761
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 377, 721, 809
Bsh1236I CGCG 2 cut(s) 182, 497
Bsh1285I CGRYCG 2 cut(s) 421, 524
BshVI ATCGAT 1 cut(s) 421
BsiEI CGRYCG 2 cut(s) 421, 524
BsiHKAI GWGCWC 1 cut(s) 700
BsiSI CCGG 2 cut(s) 100, 528
BsiWI CGTACG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 25, 758
BsmBI CGTCTC 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 700
Bsp143I GATC 6 cut(s) 270, 319, 418, 466, 517, 634
Bsp68I TCGCGA 1 cut(s) 497
BspACI CCGC 4 cut(s) 60, 263, 363, 740
BspCNI CTCAG 4 cut(s) 336, 630, 643, 762
BspDI ATCGAT 1 cut(s) 421
BspFNI CGCG 2 cut(s) 182, 497
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 642
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 6 cut(s) 270, 319, 418, 466, 517, 634
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 19, 113, 525
Bst6I CTCTTC 3 cut(s) 157, 248, 528
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 5 cut(s) 205, 323, 630, 638, 770
BstF5I GGATG 2 cut(s) 146, 383
BstFNI CGCG 2 cut(s) 182, 497
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 254
BstKTI GATC 6 cut(s) 273, 322, 421, 469, 520, 637
BstMAI GTCTC 2 cut(s) 25, 758
BstMBI GATC 6 cut(s) 270, 319, 418, 466, 517, 634
BstMCI CGRYCG 2 cut(s) 421, 524
BstMWI GCNNNNNNNGC 1 cut(s) 803
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 2 cut(s) 182, 497
BstV1I GCAGC 3 cut(s) 377, 721, 809
BstX2I RGATCY 2 cut(s) 270, 634
BstYI RGATCY 2 cut(s) 270, 634
Bsu15I ATCGAT 1 cut(s) 421
BsuTUI ATCGAT 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 810
BtrI CACGTC 1 cut(s) 507
BtsCI GGATG 2 cut(s) 146, 383
BtsIMutI CAGTG 1 cut(s) 15
BtuMI TCGCGA 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 714
CaiI CAGNNNCTG 2 cut(s) 637, 803
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 7, 254
ClaI ATCGAT 1 cut(s) 421
CseI GACGC 4 cut(s) 356, 370, 395, 775
Csp6I GTAC 1 cut(s) 477
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 5 cut(s) 205, 323, 630, 638, 770
DpnI GATC 6 cut(s) 272, 321, 420, 468, 519, 636
DpnII GATC 6 cut(s) 270, 319, 418, 466, 517, 634
Eam1104I CTCTTC 3 cut(s) 157, 248, 528
EarI CTCTTC 3 cut(s) 157, 248, 528
EciI GGCGGA 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 698
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 758
FaeI CATG 1 cut(s) 298
FaiI YATR 2 cut(s) 296, 835
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 2 cut(s) 339, 414
Fnu4HI GCNGC 5 cut(s) 366, 710, 741, 798, 830
FokI GGATG 2 cut(s) 133, 390
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 5 cut(s) 366, 710, 741, 798, 830
FspBI CTAG 2 cut(s) 410, 744
GlaI GCGC 2 cut(s) 6, 253
GluI GCNGC 5 cut(s) 366, 710, 741, 798, 830
GsuI CTGGAG 1 cut(s) 743
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 100, 528
HgaI GACGC 4 cut(s) 356, 370, 395, 775
HhaI GCGC 2 cut(s) 7, 254
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 2 cut(s) 5, 252
HinP1I GCGC 2 cut(s) 5, 252
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HpaII CCGG 2 cut(s) 100, 528
HphI GGTGA 2 cut(s) 454, 542
Hpy166II GTNNAC 3 cut(s) 125, 340, 415
Hpy188III TCNNGA 6 cut(s) 295, 394, 446, 496, 542, 632
Hpy8I GTNNAC 3 cut(s) 125, 340, 415
Hpy99I CGWCG 6 cut(s) 117, 350, 386, 419, 497, 680
HpyAV CCTTC 6 cut(s) 39, 43, 73, 145, 166, 686
HpyCH4III ACNGT 3 cut(s) 19, 113, 525
HpyCH4IV ACGT 2 cut(s) 506, 686
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 803
HpyF3I CTNAG 5 cut(s) 205, 323, 630, 638, 770
HpySE526I ACGT 2 cut(s) 506, 686
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 2 cut(s) 5, 252
Kzo9I GATC 6 cut(s) 270, 319, 418, 466, 517, 634
LmnI GCTCC 6 cut(s) 102, 365, 695, 703, 706, 724
Lsp1109I GCAGC 3 cut(s) 377, 721, 809
LweI GCATC 3 cut(s) 114, 288, 368
MaeI CTAG 2 cut(s) 410, 744
MaeII ACGT 2 cut(s) 506, 686
MaeIII GTNAC 4 cut(s) 284, 460, 502, 717
MalI GATC 6 cut(s) 272, 321, 420, 468, 519, 636
MboI GATC 6 cut(s) 270, 319, 418, 466, 517, 634
MflI RGATCY 2 cut(s) 270, 634
MhlI GDGCHC 1 cut(s) 700
MluCI AATT 2 cut(s) 548, 784
MlyI GAGTC 3 cut(s) 300, 468, 652
MmeI TCCRAC 4 cut(s) 364, 369, 658, 680
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 431, 749
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 2 cut(s) 100, 528
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 182, 497
MwoI GCNNNNNNNGC 1 cut(s) 803
NdeII GATC 6 cut(s) 270, 319, 418, 466, 517, 634
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 460, 502
NruI TCGCGA 1 cut(s) 497
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 399
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 9 cut(s) 184, 327, 372, 423, 453, 538, 586, 626, 646
Pfl23II CGTACG 1 cut(s) 476
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 5 cut(s) 367, 711, 742, 799, 831
Ple19I CGATCG 1 cut(s) 421
PleI GAGTC 3 cut(s) 299, 467, 652
PpsI GAGTC 3 cut(s) 299, 467, 652
Psp124BI GAGCTC 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspLI CGTACG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 361
PstNI CAGNNNCTG 2 cut(s) 637, 803
PsuI RGATCY 2 cut(s) 270, 634
PsyI GACNNNGTC 1 cut(s) 206
PvuI CGATCG 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 368
RruI TCGCGA 1 cut(s) 497
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SacI GAGCTC 1 cut(s) 700
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 431, 749
SatI GCNGC 5 cut(s) 366, 710, 741, 798, 830
Sau3AI GATC 6 cut(s) 270, 319, 418, 466, 517, 634
SchI GAGTC 3 cut(s) 300, 468, 652
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 700
SfaNI GCATC 3 cut(s) 114, 288, 368
Sse9I AATT 2 cut(s) 548, 784
SsiI CCGC 4 cut(s) 60, 263, 363, 740
SspMI CTAG 2 cut(s) 410, 744
SstI GAGCTC 1 cut(s) 700
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 3 cut(s) 19, 113, 525
TaiI ACGT 2 cut(s) 509, 689
TaqI TCGA 8 cut(s) 115, 210, 276, 414, 421, 520, 589, 596
TasI AATT 2 cut(s) 548, 784
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 9 cut(s) 184, 327, 372, 423, 453, 538, 586, 626, 646
Tru1I TTAA 2 cut(s) 431, 749
Tru9I TTAA 2 cut(s) 431, 749
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 460, 502
TseI GCWGC 4 cut(s) 365, 709, 797, 829
Tsp45I GTSAC 2 cut(s) 460, 502
TspDTI ATGAA 2 cut(s) 573, 590
TspGWI ACGGA 3 cut(s) 128, 464, 651
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 339, 414
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 410, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.