Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008497

Physical Location & Seq

Genomic Coordinates Forward (+)

15567831 .. 15568538

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCATTTTCGACACCCCACTCCCCAAATCTCCTCTCCTCTCTCGTCTCAGACCTCGCTCGAGCTCCCCATCTTCCCCCTCCCCCTCGTCCTCTTCCCCGGCGCCATCCTCCCCCTCCAGATCTTCGAGTTCCGCTCCAGATCTTCGGGGTTATCTACAATGATGCCGTCTCCGGCACCGTCGACGTTGGCTGCGTCGGCGAGGTCGTCAAGCACGAGCGCCTCGTCGATGACCGGTTCTTCCTCATCTGCAAAGGCCAGGAGCGGTTCCGGGTCACTGACCTCGTCCGTACCAAACCTTACCTGGTGGCGGAGGTCCAATGGCTCGAAGACCTGCCGTCGAACGACGGCGAGGAGGACCTGGAGGCGTTGGCCAGCGAGGTCGAGTTGTATATGAAGGATGTGATTCGGTTGTCAAATCGGTTGGGCGGGAAGCCGGAGAAGGATGTGCAGGACCTGCGACGGAACCTGTTTCCGACGCCGTTTTCGTTTTTCGTTGGGAGCACTTTCGAAGGGGCACCGAGAGAGCAGCAGGCGCTGCTGGAACTGGAGGACACGGCGGCGCGGTTGAAGAGAGAGAAGGACCCGTGGACCCGTACAAATTTTTTTTTTTTTCAAACAACCAAAAAAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

213

Amino Acids

24.21

Weight (kDa)

6.13

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19740 AT1G75460
fragaria_vesca	FvH4_2g39180
malus_domestica	MD08G1023400.v1.1 MD15G1020800.v1.1
prunus_persica	Prupe.1G372600_v2.0.a1
pyrus_communis	pycom05g12090 pycom05g12660 pycom08g01820 pycom15g01710
rosa_chinensis	RchiOBHm_Chr5g0055761 RchiOBHm_Chr6g0301881
rosa_laevigata	RLG00000011213
rosa_multiflora	Rmu_sc0000407.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024570 Rroxscaffold_3G00237460 Rroxscaffold_7G00166310
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422500 Rh6BG429300 Rh6CG435800 Rh6DG422800
rosa_wichuraiana	Rw6G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	342, 465
AccB1I	GGYRCC	3 cut(s)	102, 176, 517
AccBSI	CCGCTC	2 cut(s)	136, 265
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	565
AciI	CCGC	6 cut(s)	134, 265, 311, 429, 560, 565
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	2 cut(s)	103, 479
AfaI	GTAC	2 cut(s)	292, 598
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	571, 617
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	258, 303, 360
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw21I	GWGCWC	2 cut(s)	67, 506
Alw26I	GTCTC	2 cut(s)	52, 175
AlwNI	CAGNNNCTG	2 cut(s)	457, 538
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	256, 372
ApeKI	GCWGC	3 cut(s)	192, 529, 538
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	4 cut(s)	105, 222, 538, 565
AspS9I	GGNCC	5 cut(s)	316, 358, 454, 583, 591
AsuC2I	CCSGG	2 cut(s)	100, 272
AsuII	TTCGAA	1 cut(s)	510
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	5 cut(s)	316, 358, 454, 583, 591
BaeGI	GKGCMC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	3 cut(s)	102, 176, 517
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	67, 506
BbvI	GCAGC	3 cut(s)	179, 525, 541
BccI	CCATC	2 cut(s)	78, 114
BceAI	ACGGC	5 cut(s)	152, 322, 364, 466, 573
BciT130I	CCWGG	3 cut(s)	260, 305, 362
BcnI	CCSGG	2 cut(s)	100, 272
BcoDI	GTCTC	2 cut(s)	52, 175
BfoI	RGCGCY	3 cut(s)	106, 223, 539
BfuAI	ACCTGC	2 cut(s)	342, 465
BglII	AGATCT	2 cut(s)	121, 141
BisI	GCNGC	4 cut(s)	193, 530, 539, 561
BlsI	GCNGC	4 cut(s)	194, 531, 540, 562
Bme1390I	CCNGG	5 cut(s)	100, 260, 272, 305, 362
Bme18I	GGWCC	5 cut(s)	316, 358, 454, 583, 591
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	5 cut(s)	316, 358, 454, 583, 591
BmiI	GGNNCC	7 cut(s)	104, 178, 269, 467, 519, 585, 593
BmrFI	CCNGG	5 cut(s)	100, 260, 272, 305, 362
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	4 cut(s)	102, 122, 383, 569
Bpu14I	TTCGAA	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	100, 272
BsaHI	GRCGYC	2 cut(s)	103, 479
BsaJI	CCNNGG	2 cut(s)	98, 587
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	3 cut(s)	260, 305, 362
BseDI	CCNNGG	2 cut(s)	98, 587
BseGI	GGATG	3 cut(s)	106, 406, 451
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	3 cut(s)	23, 28, 368
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	3 cut(s)	179, 525, 541
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	2 cut(s)	258, 374
BshNI	GGYRCC	3 cut(s)	102, 176, 517
BshTI	ACCGGT	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	67, 506
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	100, 174, 235, 271, 437
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	52, 175
BsmBI	CGTCTC	2 cut(s)	52, 175
BsnI	GGCC	2 cut(s)	258, 374
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	3 cut(s)	67, 506, 520
Bsp143I	GATC	2 cut(s)	121, 141
BspACI	CCGC	6 cut(s)	134, 265, 311, 429, 560, 565
BspANI	GGCC	2 cut(s)	258, 374
BspCNI	CTCAG	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	565
BspLI	GGNNCC	7 cut(s)	104, 178, 269, 467, 519, 585, 593
BspMI	ACCTGC	2 cut(s)	342, 465
BspT104I	TTCGAA	1 cut(s)	510
BspT107I	GGYRCC	3 cut(s)	102, 176, 517
BsrBI	CCGCTC	2 cut(s)	136, 265
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	98, 587
BssMI	GATC	2 cut(s)	121, 141
BssNI	GRCGYC	2 cut(s)	103, 479
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	260, 305, 362
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	99, 566
BstACI	GRCGYC	2 cut(s)	103, 479
BstAPI	GCANNNNNTGC	2 cut(s)	457, 538
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	376, 534
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	3 cut(s)	106, 406, 451
BstFNI	CGCG	1 cut(s)	565
BstH2I	RGCGCY	3 cut(s)	106, 223, 539
BstHHI	GCGC	4 cut(s)	105, 222, 538, 565
BstKTI	GATC	2 cut(s)	124, 144
BstMAI	GTCTC	2 cut(s)	52, 175
BstMBI	GATC	2 cut(s)	121, 141
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 457, 535, 538
BstNI	CCWGG	3 cut(s)	260, 305, 362
BstSCI	CCNGG	5 cut(s)	98, 258, 270, 303, 360
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	565
BstV1I	GCAGC	3 cut(s)	179, 525, 541
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	121, 141
BstYI	RGATCY	2 cut(s)	121, 141
BsuRI	GGCC	2 cut(s)	258, 374
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	3 cut(s)	106, 406, 451
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	2 cut(s)	342, 465
Cac8I	GCNNGC	2 cut(s)	376, 534
CaiI	CAGNNNCTG	2 cut(s)	457, 538
CfoI	GCGC	4 cut(s)	105, 222, 538, 565
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	316, 358, 454, 583, 591
CseI	GACGC	2 cut(s)	184, 487
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	291, 597
CspAI	ACCGGT	1 cut(s)	234
CviJI	RGCY	6 cut(s)	65, 192, 258, 325, 374, 436
CviKI_1	RGCY	6 cut(s)	65, 192, 258, 325, 374, 436
CviQI	GTAC	2 cut(s)	291, 597
DdeI	CTNAG	1 cut(s)	49
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	2 cut(s)	123, 143
DpnII	GATC	2 cut(s)	121, 141
DriI	GACNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	99, 566
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	2 cut(s)	99, 566
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	5 cut(s)	316, 358, 454, 583, 591
Eco53kI	GAGCTC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	3 cut(s)	358, 454, 583
EcoRII	CCWGG	3 cut(s)	258, 303, 360
EcoT38I	GRGCYC	1 cut(s)	67
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
Esp3I	CGTCTC	2 cut(s)	52, 175
FaiI	YATR	2 cut(s)	393, 395
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	193, 530, 539, 561
FokI	GGATG	3 cut(s)	93, 413, 458
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	193, 530, 539, 561
GlaI	GCGC	4 cut(s)	104, 221, 537, 564
GluI	GCNGC	4 cut(s)	193, 530, 539, 561
GsuI	CTGGAG	4 cut(s)	102, 122, 383, 569
HaeII	RGCGCY	3 cut(s)	106, 223, 539
HaeIII	GGCC	2 cut(s)	258, 374
HapII	CCGG	5 cut(s)	100, 174, 235, 271, 437
HgaI	GACGC	2 cut(s)	184, 487
HhaI	GCGC	4 cut(s)	105, 222, 538, 565
Hin1I	GRCGYC	2 cut(s)	103, 479
Hin6I	GCGC	4 cut(s)	103, 220, 536, 563
HinP1I	GCGC	4 cut(s)	103, 220, 536, 563
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	5 cut(s)	100, 174, 235, 271, 437
Hpy166II	GTNNAC	2 cut(s)	184, 591
Hpy188I	TCNGA	2 cut(s)	52, 477
Hpy188III	TCNNGA	2 cut(s)	119, 139
Hpy8I	GTNNAC	2 cut(s)	184, 591
Hpy99I	CGWCG	8 cut(s)	185, 188, 200, 230, 343, 350, 465, 481
HpyAV	CCTTC	4 cut(s)	391, 436, 506, 574
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	252, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 457, 535, 538
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	103, 479
HspAI	GCGC	4 cut(s)	103, 220, 536, 563
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	121, 141
LmnI	GCTCC	4 cut(s)	70, 141, 262, 501
Lsp1109I	GCAGC	3 cut(s)	179, 525, 541
LweI	GCATC	1 cut(s)	154
MabI	ACCWGGT	1 cut(s)	303
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	123, 143
MbiI	CCGCTC	2 cut(s)	136, 265
MboI	GATC	2 cut(s)	121, 141
MboII	GAAGA	7 cut(s)	65, 86, 116, 136, 232, 341, 583
MflI	RGATCY	2 cut(s)	121, 141
MhlI	GDGCHC	3 cut(s)	67, 506, 520
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	1 cut(s)	601
MluNI	TGGCCA	1 cut(s)	374
Mly113I	GGCGCC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	500
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	5 cut(s)	100, 174, 235, 271, 437
MspR9I	CCNGG	5 cut(s)	100, 260, 272, 305, 362
MvaI	CCWGG	3 cut(s)	260, 305, 362
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	4 cut(s)	198, 457, 535, 538
NarI	GGCGCC	1 cut(s)	103
NciI	CCSGG	2 cut(s)	100, 272
NdeII	GATC	2 cut(s)	121, 141
NlaIV	GGNNCC	7 cut(s)	104, 178, 269, 467, 519, 585, 593
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	5 cut(s)	192, 204, 213, 222, 485
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	284
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	194, 531, 540, 562
PluTI	GGCGCC	1 cut(s)	106
PpuMI	RGGWCCY	3 cut(s)	358, 454, 583
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	3 cut(s)	358, 454, 583
Psp6I	CCWGG	3 cut(s)	258, 303, 360
PspGI	CCWGG	3 cut(s)	258, 303, 360
PspN4I	GGNNCC	7 cut(s)	104, 178, 269, 467, 519, 585, 593
PspPI	GGNCC	5 cut(s)	316, 358, 454, 583, 591
PspPPI	RGGWCCY	3 cut(s)	358, 454, 583
PspXI	VCTCGAGB	1 cut(s)	60
PstNI	CAGNNNCTG	2 cut(s)	457, 538
PsuI	RGATCY	2 cut(s)	121, 141
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	2 cut(s)	292, 598
RsaNI	GTAC	2 cut(s)	291, 597
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	4 cut(s)	193, 530, 539, 561
Sau3AI	GATC	2 cut(s)	121, 141
Sau96I	GGNCC	5 cut(s)	316, 358, 454, 583, 591
ScrFI	CCNGG	5 cut(s)	100, 260, 272, 305, 362
SduI	GDGCHC	3 cut(s)	67, 506, 520
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	510
SgrDI	CGTCGACG	1 cut(s)	182
SinI	GGWCC	5 cut(s)	316, 358, 454, 583, 591
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	6 cut(s)	134, 265, 311, 429, 560, 565
SspDI	GGCGCC	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	5 cut(s)	98, 258, 270, 303, 360
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	9 cut(s)	11, 61, 127, 183, 228, 327, 341, 384, 510
TasI	AATT	1 cut(s)	601
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	1 cut(s)	406
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	192, 529, 538
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	2 cut(s)	278, 478
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	5 cut(s)	316, 358, 454, 583, 591
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.