Rroxscaffold_1G00024570

LON peptidase N-terminal domain and RING finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008497
Physical Location & Seq
Reverse (-)
30521163 .. 30521522
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024570.1

Sequence Viewer

Length: 360 bp
ATGATGCACTCGCTCCTCCGGACCAATCTCTCGATTCGGCATCATCTACAACAACGCCGTCTCCGCCACATCGGCGATGTCGTCAAACACGAGTGGCTCGTCAACAATCGGTTCTTCTTGACGTGGAACCTATTTCCAAGGCCGTTTTCGTTCTTCATCGGAGGCACTTTCAAAGGTGCATCGAGGGAGCAACATGCCTTACCGGAGTTGGAAGACACGAGGGCGAGGCTAAAGAGCAAGAAGGAGACGTTGAGGAACATAATAAATTACCGACGGCGGCGTCGCCGCAAAGATGTTTTTCTCGTCGTCTTTAGTGGTGAATTTGAAGGGAGAGAGGAAGAAGAGATTGAAGCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

119

Amino Acids

14.5

Weight (kDa)

11.17

Isoelectric Point (pI)

82.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 3 cut(s) 64, 277, 286
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 280
AgsI TTSAA 3 cut(s) 172, 326, 350
AjiI CACGTC 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
Alw26I GTCTC 2 cut(s) 65, 239
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 21
BauI CACGAG 2 cut(s) 89, 217
BbsI GAAGAC 1 cut(s) 219
BceAI ACGGC 3 cut(s) 42, 127, 290
BcoDI GTCTC 2 cut(s) 65, 239
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 2 cut(s) 278, 286
BlsI GCNGC 2 cut(s) 279, 287
Bme18I GGWCC 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 2 cut(s) 49, 188
BpiI GAAGAC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 2 cut(s) 18, 202
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 5
BshFI GGCC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 19, 203
BsmAI GTCTC 2 cut(s) 65, 239
BsmBI CGTCTC 2 cut(s) 65, 239
BsnI GGCC 1 cut(s) 142
Bsp13I TCCGGA 1 cut(s) 18
BspACI CCGC 3 cut(s) 64, 277, 286
BspANI GGCC 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 280
BssSI CACGAG 2 cut(s) 89, 217
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 2 cut(s) 89, 217
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 65, 239
BstMWI GCNNNNNNNGC 2 cut(s) 63, 72
BstNSI RCATGY 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 269
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 97, 142, 229, 353
CviKI_1 RGCY 4 cut(s) 97, 142, 229, 353
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
Esp3I CGTCTC 2 cut(s) 65, 239
FaeI CATG 1 cut(s) 197
FaiI YATR 2 cut(s) 195, 260
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 278, 286
Fsp4HI GCNGC 2 cut(s) 278, 286
GluI GCNGC 2 cut(s) 278, 286
HaeIII GGCC 1 cut(s) 142
HapII CCGG 2 cut(s) 19, 203
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 34
HpaII CCGG 2 cut(s) 19, 203
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 19, 31, 118
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 276, 285, 308
HpyAV CCTTC 2 cut(s) 235, 320
HpyCH4IV ACGT 2 cut(s) 122, 248
HpyCH4V TGCA 2 cut(s) 7, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 72
HpySE526I ACGT 2 cut(s) 122, 248
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 18
LmnI GCTCC 2 cut(s) 18, 187
LpnPI CCDG 2 cut(s) 32, 216
LweI GCATC 2 cut(s) 49, 188
MaeII ACGT 2 cut(s) 122, 248
MboII GAAGA 5 cut(s) 106, 145, 224, 350, 353
MluCI AATT 2 cut(s) 265, 320
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 26, 155, 177, 213, 219, 246, 328
MroI TCCGGA 1 cut(s) 18
MspI CCGG 2 cut(s) 19, 203
MwoI GCNNNNNNNGC 2 cut(s) 63, 72
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 128
NspI RCATGY 1 cut(s) 197
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 87, 96
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 279, 287
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 21
SatI GCNGC 2 cut(s) 278, 286
Sau96I GGNCC 1 cut(s) 21
SetI ASST 4 cut(s) 125, 132, 178, 251
SfaNI GCATC 2 cut(s) 49, 188
SinI GGWCC 1 cut(s) 21
Sse9I AATT 2 cut(s) 265, 320
SsiI CCGC 3 cut(s) 64, 277, 286
StyI CCWWGG 1 cut(s) 137
TaiI ACGT 2 cut(s) 125, 251
TaqI TCGA 2 cut(s) 32, 182
TasI AATT 2 cut(s) 265, 320
TauI GCSGC 2 cut(s) 280, 288
TfiI GAWTC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.