FvH4_2g39180

LON peptidase N-terminal domain and RING finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008497
Physical Location & Seq
Reverse (-)
28205314 .. 28206171
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39180.t1

Sequence Viewer

Length: 858 bp
ATGGCTCTTCCTCAGCTCATTCCCTCCCCTTCTTCTTCTTCCTCCCTCCACCATAAACCCTCCTTCAATCCCAATTTACTCCCCTACCCCTTAAACCCTAACCCTAATTTCCTATCTACTCCTCTCCTCCGCCGCCAGCGACACCGCTCATCCTCCCTCAAATGCTCCGCCTCCTCCTTCTCCGAGCGCCACCACACCAACTCCAAGTCCGACGACGTCGTCGAGCTGCCTCTGTTTCCGTTGCCGCTCGTCCTCTTCCCCGGCGCGATTCTCCCGCTCCAGATCTTCGAGTTCCGCTACCGGATGATGATGCACTCGCTCCTCCAGACCGATCTCCGATTCGGCGTCATCTACAGCGACGCCGTCTCCGGCACCGCCGACGTCGGCTGCGTCGGCGAGGTTGTGAAGCACGAGCGGCTCGTCGACGACCGGTTCTTCCTGATTTGCAAAGGTCAGGAGCGGTTTAGGGTTACGGACCTGGTTCGGACCAAGCCTTACCTGGTGGCGGAGGTCCAGTGGCTGGAGGACCGGCCGTCCGGCGACGGCGAGGAGGACCTGGACGCGTTGGCGACGGAGGTGGAGTCCTACATGAAGGACGTGATTCGGCTCTCGAACCGGCTCGGCGGCAAGCCGGAGAAGGAGGTGCAGGACCTGCGGCGGAACCTGTTTCCGACGCCGTTCTCGTTCTTCGTCGGAAGCACTTTCGAAGGCGCGCCGAGGGAGCAGCAGGCGTTGCTGGAGCTGGTGGACACGACGGCGCGGCTGAAGAGGGAGAAGGAGACGCTGAGGAACACGCTCAATTACTTGACGGCGGCCTCCGCCGTGAAAGACGTTTTTCCGTCGTCATCGTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

286

Amino Acids

32.17

Weight (kDa)

6.67

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 75 - 262 7.7e-29 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 2 cut(s) 219, 384
Acc36I ACCTGC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 520
AccBSI CCGCTC 5 cut(s) 147, 247, 277, 415, 460
AccI GTMKAC 1 cut(s) 423
AccII CGCG 4 cut(s) 266, 563, 713, 760
AcoI YGGCCR 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 785
AcyI GRCGYC 5 cut(s) 216, 345, 360, 381, 674
AfiI CCNNNNNNNGG 2 cut(s) 505, 520
AflIII ACRYGT 1 cut(s) 561
AgeI ACCGGT 1 cut(s) 429
AgsI TTSAA 1 cut(s) 67
AhdI GACNNNNNGTC 1 cut(s) 532
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 3 cut(s) 477, 498, 555
AluBI AGCT 3 cut(s) 16, 226, 742
AluI AGCT 3 cut(s) 16, 226, 742
Alw26I GTCTC 2 cut(s) 370, 773
AlwNI CAGNNNCTG 2 cut(s) 520, 652
AoxI GGCC 2 cut(s) 530, 813
ApeKI GCWGC 3 cut(s) 226, 387, 724
AscI GGCGCGCC 1 cut(s) 711
AsiGI ACCGGT 1 cut(s) 429
AspLEI GCGC 5 cut(s) 189, 266, 713, 715, 760
AspS9I GGNCC 6 cut(s) 475, 486, 511, 526, 553, 649
AsuC2I CCSGG 1 cut(s) 261
AsuII TTCGAA 1 cut(s) 705
AvaII GGWCC 6 cut(s) 475, 486, 511, 526, 553, 649
BanI GGYRCC 1 cut(s) 371
BauI CACGAG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 843
BbvCI CCTCAGC 2 cut(s) 12, 785
BbvI GCAGC 3 cut(s) 213, 374, 736
BceAI ACGGC 7 cut(s) 347, 517, 559, 661, 771, 806, 825
BciT130I CCWGG 3 cut(s) 479, 500, 557
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 370, 773
BfmI CTRYAG 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 660
BglII AGATCT 1 cut(s) 282
Bme1390I CCNGG 4 cut(s) 261, 479, 500, 557
Bme18I GGWCC 6 cut(s) 475, 486, 511, 526, 553, 649
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 6 cut(s) 475, 486, 511, 526, 553, 649
BmiI GGNNCC 2 cut(s) 373, 662
BmrFI CCNGG 4 cut(s) 261, 479, 500, 557
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 843
BpmI CTGGAG 4 cut(s) 263, 308, 542, 758
Bpu10I CCTNAGC 2 cut(s) 12, 785
Bpu14I TTCGAA 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 261
BsaHI GRCGYC 5 cut(s) 216, 345, 360, 381, 674
BsaJI CCNNGG 2 cut(s) 259, 716
BsaWI WCCGGW 2 cut(s) 300, 429
BsaXI ACNNNNNCTCC 8 cut(s) 185, 215, 350, 380, 500, 530, 566, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 520
Bse118I RCCGGY 3 cut(s) 429, 528, 615
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 3 cut(s) 479, 500, 557
BseDI CCNNGG 2 cut(s) 259, 716
BseGI GGATG 2 cut(s) 149, 309
BseLI CCNNNNNNNGG 2 cut(s) 505, 520
BseMII CTCAG 2 cut(s) 26, 776
BseNI ACTGG 1 cut(s) 514
BsePI GCGCGC 1 cut(s) 711
BseRI GAGGAG 5 cut(s) 111, 116, 163, 311, 563
BseX3I CGGCCG 1 cut(s) 530
BseXI GCAGC 3 cut(s) 213, 374, 736
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 4 cut(s) 266, 563, 713, 760
Bsh1285I CGRYCG 2 cut(s) 430, 533
BshFI GGCC 2 cut(s) 532, 815
BshNI GGYRCC 1 cut(s) 371
BshTI ACCGGT 1 cut(s) 429
BsiEI CGRYCG 2 cut(s) 430, 533
BsiSI CCGG 8 cut(s) 261, 301, 369, 430, 529, 537, 616, 632
BslI CCNNNNNNNGG 2 cut(s) 505, 520
BsmAI GTCTC 2 cut(s) 370, 773
BsmBI CGTCTC 2 cut(s) 370, 773
BsnI GGCC 2 cut(s) 532, 815
Bsp119I TTCGAA 1 cut(s) 705
Bsp143I GATC 2 cut(s) 282, 331
BspANI GGCC 2 cut(s) 532, 815
BspCNI CTCAG 2 cut(s) 25, 777
BspFNI CGCG 4 cut(s) 266, 563, 713, 760
BspLI GGNNCC 2 cut(s) 373, 662
BspMI ACCTGC 1 cut(s) 660
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 371
BsrBI CCGCTC 5 cut(s) 147, 247, 277, 415, 460
BsrFI RCCGGY 3 cut(s) 429, 528, 615
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 3 cut(s) 429, 528, 615
BssECI CCNNGG 2 cut(s) 259, 716
BssHII GCGCGC 1 cut(s) 711
BssMI GATC 2 cut(s) 282, 331
BssNI GRCGYC 5 cut(s) 216, 345, 360, 381, 674
BssSI CACGAG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 3 cut(s) 479, 500, 557
Bst6I CTCTTC 3 cut(s) 12, 260, 761
BstACI GRCGYC 5 cut(s) 216, 345, 360, 381, 674
BstAPI GCANNNNNTGC 2 cut(s) 652, 733
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 4 cut(s) 137, 629, 713, 729
BstDEI CTNAG 2 cut(s) 12, 785
BstF5I GGATG 2 cut(s) 149, 309
BstFNI CGCG 4 cut(s) 266, 563, 713, 760
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 5 cut(s) 189, 266, 713, 715, 760
BstKTI GATC 2 cut(s) 285, 334
BstMAI GTCTC 2 cut(s) 370, 773
BstMBI GATC 2 cut(s) 282, 331
BstMCI CGRYCG 2 cut(s) 430, 533
BstMWI GCNNNNNNNGC 6 cut(s) 393, 415, 652, 721, 733, 818
BstNI CCWGG 3 cut(s) 479, 500, 557
BstSCI CCNGG 4 cut(s) 259, 477, 498, 555
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 4 cut(s) 266, 563, 713, 760
BstV1I GCAGC 3 cut(s) 213, 374, 736
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZI CGGCCG 1 cut(s) 530
BsuRI GGCC 2 cut(s) 532, 815
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 149, 309
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 4 cut(s) 137, 629, 713, 729
CaiI CAGNNNCTG 2 cut(s) 520, 652
CfoI GCGC 5 cut(s) 189, 266, 713, 715, 760
Cfr10I RCCGGY 3 cut(s) 429, 528, 615
Cfr13I GGNCC 6 cut(s) 475, 486, 511, 526, 553, 649
CseI GACGC 6 cut(s) 334, 368, 379, 569, 682, 790
CsiI ACCWGGT 2 cut(s) 477, 498
CspAI ACCGGT 1 cut(s) 429
CviAII CATG 1 cut(s) 589
DdeI CTNAG 2 cut(s) 12, 785
DpnI GATC 2 cut(s) 284, 333
DpnII GATC 2 cut(s) 282, 331
DrdI GACNNNNNNGTC 1 cut(s) 218
DriI GACNNNNNGTC 1 cut(s) 532
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 530
EagI CGGCCG 1 cut(s) 530
Eam1104I CTCTTC 3 cut(s) 12, 260, 761
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 3 cut(s) 12, 260, 761
EciI GGCGGA 5 cut(s) 119, 157, 521, 673, 808
EclXI CGGCCG 1 cut(s) 530
Eco47I GGWCC 6 cut(s) 475, 486, 511, 526, 553, 649
Eco52I CGGCCG 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 785
EcoO109I RGGNCCY 2 cut(s) 553, 649
EcoRII CCWGG 3 cut(s) 477, 498, 555
Esp3I CGTCTC 2 cut(s) 370, 773
FaeI CATG 1 cut(s) 592
FaiI YATR 2 cut(s) 54, 590
FatI CATG 1 cut(s) 588
FauI CCCGC 1 cut(s) 282
FblI GTMKAC 1 cut(s) 423
FokI GGATG 2 cut(s) 136, 316
GlaI GCGC 5 cut(s) 188, 265, 712, 714, 759
GsuI CTGGAG 4 cut(s) 263, 308, 542, 758
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 532, 815
HapII CCGG 8 cut(s) 261, 301, 369, 430, 529, 537, 616, 632
HgaI GACGC 6 cut(s) 334, 368, 379, 569, 682, 790
HhaI GCGC 5 cut(s) 189, 266, 713, 715, 760
Hin1I GRCGYC 5 cut(s) 216, 345, 360, 381, 674
Hin1II CATG 1 cut(s) 592
Hin6I GCGC 5 cut(s) 187, 264, 711, 713, 758
HinP1I GCGC 5 cut(s) 187, 264, 711, 713, 758
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 268, 339, 581, 601
HpaII CCGG 8 cut(s) 261, 301, 369, 430, 529, 537, 616, 632
Hpy166II GTNNAC 2 cut(s) 424, 748
Hpy188I TCNGA 6 cut(s) 184, 211, 338, 486, 672, 695
Hpy188III TCNNGA 6 cut(s) 280, 325, 439, 455, 610, 855
Hpy8I GTNNAC 2 cut(s) 424, 748
HpyAV CCTTC 7 cut(s) 39, 73, 187, 586, 631, 701, 769
HpyCH4IV ACGT 4 cut(s) 216, 381, 597, 831
HpyCH4V TGCA 3 cut(s) 313, 447, 646
HpyF10VI GCNNNNNNNGC 6 cut(s) 393, 415, 652, 721, 733, 818
HpyF3I CTNAG 2 cut(s) 12, 785
HpySE526I ACGT 4 cut(s) 216, 381, 597, 831
Hsp92I GRCGYC 5 cut(s) 216, 345, 360, 381, 674
Hsp92II CATG 1 cut(s) 592
HspAI GCGC 5 cut(s) 187, 264, 711, 713, 758
Kzo9I GATC 2 cut(s) 282, 331
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 6 cut(s) 170, 282, 324, 457, 721, 739
Lsp1109I GCAGC 3 cut(s) 213, 374, 736
LweI GCATC 1 cut(s) 300
MabI ACCWGGT 2 cut(s) 477, 498
MaeII ACGT 4 cut(s) 216, 381, 597, 831
MaeIII GTNAC 1 cut(s) 469
MalI GATC 2 cut(s) 284, 333
MbiI CCGCTC 5 cut(s) 147, 247, 277, 415, 460
MboI GATC 2 cut(s) 282, 331
MboII GAAGA 9 cut(s) 24, 27, 30, 247, 277, 427, 679, 778, 843
MflI RGATCY 1 cut(s) 282
MluCI AATT 3 cut(s) 73, 106, 799
MluI ACGCGT 1 cut(s) 561
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 3 cut(s) 234, 673, 695
MseI TTAA 1 cut(s) 92
MspI CCGG 8 cut(s) 261, 301, 369, 430, 529, 537, 616, 632
MspR9I CCNGG 4 cut(s) 261, 479, 500, 557
MvaI CCWGG 3 cut(s) 479, 500, 557
MvnI CGCG 4 cut(s) 266, 563, 713, 760
MwoI GCNNNNNNNGC 6 cut(s) 393, 415, 652, 721, 733, 818
NciI CCSGG 1 cut(s) 261
NdeII GATC 2 cut(s) 282, 331
NlaIII CATG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 373, 662
NmeAIII GCCGAG 2 cut(s) 600, 741
NspV TTCGAA 1 cut(s) 705
PalAI GGCGCGCC 1 cut(s) 711
PauI GCGCGC 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 4 cut(s) 219, 387, 417, 680
PfeI GAWTC 3 cut(s) 268, 339, 601
PflFI GACNNNGTC 3 cut(s) 215, 218, 362
PflMI CCANNNNNTGG 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 429
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PpuMI RGGWCCY 2 cut(s) 553, 649
Psp5II RGGWCCY 2 cut(s) 553, 649
Psp6I CCWGG 3 cut(s) 477, 498, 555
PspGI CCWGG 3 cut(s) 477, 498, 555
PspN4I GGNNCC 2 cut(s) 373, 662
PspPI GGNCC 6 cut(s) 475, 486, 511, 526, 553, 649
PspPPI RGGWCCY 2 cut(s) 553, 649
PstNI CAGNNNCTG 2 cut(s) 520, 652
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 3 cut(s) 215, 218, 362
PteI GCGCGC 1 cut(s) 711
SalI GTCGAC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 2 cut(s) 282, 331
Sau96I GGNCC 6 cut(s) 475, 486, 511, 526, 553, 649
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 261, 479, 500, 557
SexAI ACCWGGT 2 cut(s) 477, 498
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 705
SgrDI CGTCGACG 1 cut(s) 422
SgsI GGCGCGCC 1 cut(s) 711
SinI GGWCC 6 cut(s) 475, 486, 511, 526, 553, 649
Sse9I AATT 3 cut(s) 73, 106, 799
StyD4I CCNGG 4 cut(s) 259, 477, 498, 555
TaiI ACGT 4 cut(s) 219, 384, 600, 834
TaqI TCGA 5 cut(s) 222, 288, 423, 611, 705
TaqII GACCGA 1 cut(s) 344
TasI AATT 3 cut(s) 73, 106, 799
TauI GCSGC 7 cut(s) 135, 247, 418, 627, 658, 763, 815
TfiI GAWTC 3 cut(s) 268, 339, 601
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 521
TseI GCWGC 3 cut(s) 226, 387, 724
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 4 cut(s) 228, 488, 587, 828
TspRI CASTG 1 cut(s) 521
Tth111I GACNNNGTC 3 cut(s) 215, 218, 362
Van91I CCANNNNNTGG 1 cut(s) 520
VpaK11BI GGWCC 6 cut(s) 475, 486, 511, 526, 553, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 423
ZraI GACGTC 2 cut(s) 217, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.