RLG00000011213

LON peptidase N-terminal domain and RING finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008497
Physical Location & Seq
Reverse (-)
7725660 .. 7726514
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011213

Sequence Viewer

Length: 855 bp
ATGGCTCTCCCTCAGCTCATTCCCTCCCCTTCTTCTTCTTCCTCCCTCCACCATAAACCCTCCTTTAATCCCAATCCACTCCCCTATCCCCTATCCCCAAACCCTAATTTCTTCTCTTCCCGCCTCCGCCGCCAGCGACACCGCTCTTCCTCCCTCAAATGCTCCGCTTCCTCCTTCTCCGAGCGCCACCACACCAACTCCAAGTCCGACGACGTCGTCGAGCTCCCGCTCTTTCCCTTGCCGCTCGTCCTCTTCCCCGGCGCGATTCTGCCGCTGCAGATCTTCGAGTTCCGGTACCGGATGATGATGCACTCGCTCCTCCAGACCGATCTCCGCTTCGGCGTCATCTACAGCGACGCCGTCTCCGGCACTGCCGACGTCGGCTGCGTCGGCGAGGTCGTCAAGCACGAGCGGCTTGTCGACGACCGGTTCTTCCTGATTTGTAAAGGTCAGGAGCGTTTTAGGGTTACGGACCTGGTCCGGACCAAGCCCTACCTGGTGGCGGAGGTGAAGTGGCTGGAGGACCGGCCGTCCGGCGATGGCGAGGAGGACCTGGACACATTGGCCACCGAGGTTGAGTCCTACATGAAGGACGTGATTCGGCTCTCCAACCGGCTCGGCGGTAAGCCGGAGAAGGAGGTGCAAGACCTGAGGCGGAACCTATTTCCGACGCCGTTCTCGTTCTTCGTCGGAAGCACTTTCGAAGGCGCGCCGAGGGAGCAGCAGGCCTTGCTGGAGTTGGAGGACACGGCGGCGAGGCTGAAGAGGGAGAAGGAGACGCTGAGGAACACGCTCAATTACTTGACGGCGGCGTCCGCTGTTAAAGACGTCTTTCCGTCGTCGTCGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

285

Amino Acids

32.12

Weight (kDa)

7.07

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 74 - 261 3.8e-29 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 215, 811
AatII GACGTC 3 cut(s) 216, 381, 831
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 294
AccBSI CCGCTC 4 cut(s) 144, 229, 244, 412
AccI GTMKAC 1 cut(s) 420
AccII CGCG 2 cut(s) 263, 710
AccIII TCCGGA 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 527, 564
AcuI CTGAAG 1 cut(s) 782
AcyI GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 426
AhdI GACNNNNNGTC 1 cut(s) 529
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 3 cut(s) 474, 495, 552
AluBI AGCT 2 cut(s) 16, 223
AluI AGCT 2 cut(s) 16, 223
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 367, 770
Aor13HI TCCGGA 1 cut(s) 480
AoxI GGCC 3 cut(s) 527, 564, 726
ApeKI GCWGC 3 cut(s) 274, 384, 721
AscI GGCGCGCC 1 cut(s) 708
AsiGI ACCGGT 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 294
AspLEI GCGC 4 cut(s) 186, 263, 710, 712
AspS9I GGNCC 5 cut(s) 472, 478, 483, 523, 550
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 520
AsuII TTCGAA 1 cut(s) 702
AvaII GGWCC 5 cut(s) 472, 478, 483, 523, 550
AxyI CCTNAGG 1 cut(s) 650
BalI TGGCCA 1 cut(s) 566
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 2 cut(s) 12, 782
BbvI GCAGC 3 cut(s) 261, 371, 733
BccI CCATC 1 cut(s) 533
BceAI ACGGC 5 cut(s) 344, 514, 658, 765, 822
BciT130I CCWGG 3 cut(s) 476, 497, 554
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 367, 770
BfmI CTRYAG 2 cut(s) 275, 349
BfoI RGCGCY 1 cut(s) 187
BglII AGATCT 1 cut(s) 279
BisI GCNGC 9 cut(s) 130, 242, 272, 275, 385, 413, 722, 753, 810
BlsI GCNGC 9 cut(s) 131, 243, 273, 276, 386, 414, 723, 754, 811
Bme1390I CCNGG 4 cut(s) 258, 476, 497, 554
Bme18I GGWCC 5 cut(s) 472, 478, 483, 523, 550
BmeRI GACNNNNNGTC 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 5 cut(s) 472, 478, 483, 523, 550
BmiI GGNNCC 2 cut(s) 296, 659
BmrFI CCNGG 4 cut(s) 258, 476, 497, 554
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 3 cut(s) 305, 539, 755
Bpu10I CCTNAGC 2 cut(s) 12, 782
Bpu14I TTCGAA 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 258
BsaHI GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
BsaJI CCNNGG 3 cut(s) 256, 570, 713
BsaWI WCCGGW 4 cut(s) 291, 297, 426, 480
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 347, 377, 497, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 3 cut(s) 426, 525, 612
Bse21I CCTNAGG 1 cut(s) 650
BseAI TCCGGA 1 cut(s) 480
BseBI CCWGG 3 cut(s) 476, 497, 554
BseDI CCNNGG 3 cut(s) 256, 570, 713
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 3 cut(s) 26, 641, 773
BsePI GCGCGC 1 cut(s) 708
BseRI GAGGAG 2 cut(s) 308, 560
BseX3I CGGCCG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 261, 371, 733
Bsh1236I CGCG 2 cut(s) 263, 710
Bsh1285I CGRYCG 2 cut(s) 427, 530
BshFI GGCC 3 cut(s) 529, 566, 728
BshNI GGYRCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 426
BsiEI CGRYCG 2 cut(s) 427, 530
BsiHKAI GWGCWC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 367, 770
BsmBI CGTCTC 2 cut(s) 367, 770
BsnI GGCC 3 cut(s) 529, 566, 728
Bsp119I TTCGAA 1 cut(s) 702
Bsp1286I GDGCHC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 480
Bsp143I GATC 2 cut(s) 279, 328
BspANI GGCC 3 cut(s) 529, 566, 728
BspCNI CTCAG 3 cut(s) 25, 642, 774
BspEI TCCGGA 1 cut(s) 480
BspFNI CGCG 2 cut(s) 263, 710
BspLI GGNNCC 2 cut(s) 296, 659
BspMAI CTGCAG 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 702
BspT107I GGYRCC 1 cut(s) 294
BsrBI CCGCTC 4 cut(s) 144, 229, 244, 412
BsrFI RCCGGY 3 cut(s) 426, 525, 612
BssAI RCCGGY 3 cut(s) 426, 525, 612
BssECI CCNNGG 3 cut(s) 256, 570, 713
BssHII GCGCGC 1 cut(s) 708
BssMI GATC 2 cut(s) 279, 328
BssNI GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
BssSI CACGAG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 3 cut(s) 476, 497, 554
Bst6I CTCTTC 4 cut(s) 121, 151, 257, 758
BstACI GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
BstAPI GCANNNNNTGC 1 cut(s) 730
BstBI TTCGAA 1 cut(s) 702
BstC8I GCNNGC 3 cut(s) 134, 710, 726
BstDEI CTNAG 3 cut(s) 12, 650, 782
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 2 cut(s) 263, 710
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 186, 263, 710, 712
BstKTI GATC 2 cut(s) 282, 331
BstMAI GTCTC 2 cut(s) 367, 770
BstMBI GATC 2 cut(s) 279, 328
BstMCI CGRYCG 2 cut(s) 427, 530
BstMWI GCNNNNNNNGC 6 cut(s) 129, 390, 412, 718, 730, 815
BstNI CCWGG 3 cut(s) 476, 497, 554
BstSCI CCNGG 4 cut(s) 256, 474, 495, 552
BstSFI CTRYAG 2 cut(s) 275, 349
BstUI CGCG 2 cut(s) 263, 710
BstV1I GCAGC 3 cut(s) 261, 371, 733
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BstZI CGGCCG 1 cut(s) 527
Bsu36I CCTNAGG 1 cut(s) 650
BsuRI GGCC 3 cut(s) 529, 566, 728
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 134, 710, 726
CfoI GCGC 4 cut(s) 186, 263, 710, 712
Cfr10I RCCGGY 3 cut(s) 426, 525, 612
Cfr13I GGNCC 5 cut(s) 472, 478, 483, 523, 550
CseI GACGC 6 cut(s) 331, 365, 376, 679, 787, 801
CsiI ACCWGGT 2 cut(s) 474, 495
Csp6I GTAC 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 1 cut(s) 586
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 12, 650, 782
DpnI GATC 2 cut(s) 281, 330
DpnII GATC 2 cut(s) 279, 328
DrdI GACNNNNNNGTC 2 cut(s) 215, 811
DriI GACNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 2 cut(s) 215, 811
EaeI YGGCCR 2 cut(s) 527, 564
EagI CGGCCG 1 cut(s) 527
Eam1104I CTCTTC 4 cut(s) 121, 151, 257, 758
Eam1105I GACNNNNNGTC 1 cut(s) 529
EarI CTCTTC 4 cut(s) 121, 151, 257, 758
EciI GGCGGA 3 cut(s) 116, 518, 670
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 527
Eco147I AGGCCT 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 5 cut(s) 472, 478, 483, 523, 550
Eco52I CGGCCG 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 550
EcoRII CCWGG 3 cut(s) 474, 495, 552
EcoT38I GRGCYC 1 cut(s) 225
Esp3I CGTCTC 2 cut(s) 367, 770
FaeI CATG 1 cut(s) 589
FaiI YATR 2 cut(s) 54, 587
FatI CATG 1 cut(s) 585
FauI CCCGC 2 cut(s) 128, 234
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 9 cut(s) 130, 242, 272, 275, 385, 413, 722, 753, 810
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 9 cut(s) 130, 242, 272, 275, 385, 413, 722, 753, 810
GlaI GCGC 4 cut(s) 185, 262, 709, 711
GluI GCNGC 9 cut(s) 130, 242, 272, 275, 385, 413, 722, 753, 810
GsuI CTGGAG 3 cut(s) 305, 539, 755
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 529, 566, 728
HgaI GACGC 6 cut(s) 331, 365, 376, 679, 787, 801
HhaI GCGC 4 cut(s) 186, 263, 710, 712
Hin1I GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
Hin1II CATG 1 cut(s) 589
Hin6I GCGC 4 cut(s) 184, 261, 708, 710
HinP1I GCGC 4 cut(s) 184, 261, 708, 710
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 265, 578, 598
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 4 cut(s) 181, 208, 669, 692
Hpy188III TCNNGA 5 cut(s) 322, 436, 452, 481, 852
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 6 cut(s) 39, 184, 583, 628, 698, 766
HpyCH4IV ACGT 4 cut(s) 213, 378, 594, 828
HpyCH4V TGCA 3 cut(s) 277, 310, 643
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 390, 412, 718, 730, 815
HpyF3I CTNAG 3 cut(s) 12, 650, 782
HpySE526I ACGT 4 cut(s) 213, 378, 594, 828
Hsp92I GRCGYC 7 cut(s) 213, 342, 357, 378, 671, 812, 828
Hsp92II CATG 1 cut(s) 589
HspAI GCGC 4 cut(s) 184, 261, 708, 710
Kpn2I TCCGGA 1 cut(s) 480
KpnI GGTACC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 279, 328
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 5 cut(s) 167, 228, 321, 454, 718
Lsp1109I GCAGC 3 cut(s) 261, 371, 733
LweI GCATC 1 cut(s) 297
MabI ACCWGGT 2 cut(s) 474, 495
MaeII ACGT 4 cut(s) 213, 378, 594, 828
MaeIII GTNAC 1 cut(s) 466
MalI GATC 2 cut(s) 281, 330
MbiI CCGCTC 4 cut(s) 144, 229, 244, 412
MboI GATC 2 cut(s) 279, 328
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 2 cut(s) 106, 796
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 5 cut(s) 231, 633, 670, 692, 720
Mox20I TGGCCA 1 cut(s) 566
MroI TCCGGA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 566
MseI TTAA 2 cut(s) 66, 822
Msp20I TGGCCA 1 cut(s) 566
MspA1I CMGCKG 2 cut(s) 274, 818
MspR9I CCNGG 4 cut(s) 258, 476, 497, 554
MvaI CCWGG 3 cut(s) 476, 497, 554
MvnI CGCG 2 cut(s) 263, 710
MwoI GCNNNNNNNGC 6 cut(s) 129, 390, 412, 718, 730, 815
NciI CCSGG 1 cut(s) 258
NdeII GATC 2 cut(s) 279, 328
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 2 cut(s) 296, 659
NmeAIII GCCGAG 2 cut(s) 597, 738
NspV TTCGAA 1 cut(s) 702
PalAI GGCGCGCC 1 cut(s) 708
PauI GCGCGC 1 cut(s) 708
PceI AGGCCT 1 cut(s) 728
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 5 cut(s) 216, 384, 396, 405, 677
PfeI GAWTC 2 cut(s) 265, 598
PflFI GACNNNGTC 4 cut(s) 212, 215, 359, 476
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 9 cut(s) 131, 243, 273, 276, 386, 414, 723, 754, 811
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 3 cut(s) 474, 495, 552
PspGI CCWGG 3 cut(s) 474, 495, 552
PspN4I GGNNCC 2 cut(s) 296, 659
PspPI GGNCC 5 cut(s) 472, 478, 483, 523, 550
PspPPI RGGWCCY 1 cut(s) 550
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 4 cut(s) 212, 215, 359, 476
PteI GCGCGC 1 cut(s) 708
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SacI GAGCTC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 66, 822
SatI GCNGC 9 cut(s) 130, 242, 272, 275, 385, 413, 722, 753, 810
Sau3AI GATC 2 cut(s) 279, 328
Sau96I GGNCC 5 cut(s) 472, 478, 483, 523, 550
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 258, 476, 497, 554
SduI GDGCHC 1 cut(s) 225
SexAI ACCWGGT 2 cut(s) 474, 495
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 275, 349
SfuI TTCGAA 1 cut(s) 702
SgsI GGCGCGCC 1 cut(s) 708
SinI GGWCC 5 cut(s) 472, 478, 483, 523, 550
Sse9I AATT 2 cut(s) 106, 796
SseBI AGGCCT 1 cut(s) 728
SstI GAGCTC 1 cut(s) 225
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 4 cut(s) 256, 474, 495, 552
TaiI ACGT 4 cut(s) 216, 381, 597, 831
TaqI TCGA 4 cut(s) 219, 285, 420, 702
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 106, 796
TauI GCSGC 6 cut(s) 132, 244, 274, 415, 755, 812
TfiI GAWTC 2 cut(s) 265, 598
Tru1I TTAA 2 cut(s) 66, 822
Tru9I TTAA 2 cut(s) 66, 822
TscAI CASTG 1 cut(s) 376
TseI GCWGC 3 cut(s) 274, 384, 721
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 2 cut(s) 485, 825
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 4 cut(s) 212, 215, 359, 476
VpaK11BI GGWCC 5 cut(s) 472, 478, 483, 523, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 3 cut(s) 214, 379, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.