MD15G1020800.v1.1

LON peptidase N-terminal domain and RING finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008497
Physical Location & Seq
Reverse (-)
1208818 .. 1209663
846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1020800.v1.1.491

Sequence Viewer

Length: 846 bp
ATGGCTCTCCCTCAGCTCATCCCCTCCTCTTCCTCCTCCTCCCTCCCCCATAAACCCACCTTCAACCCTAATCCCCTCCCCTCCCCCTTAAACCCTAACCCTAATATCCTCTCCCCCCGCCTCCACCGCTGCCGCCAACGGCCCGGATCCCTCAAATGCACAGCCTCCTCATTCTCTGAGCGCCACCCCACCAATCAGCCCAAATCAGGCGACGTCGTCGAGCTCCCCATTTTCCCCTTGCCCCTCGTCCTCTTCCCGGGCGCCATCCTCCCCCTCCAGATCTTCGAGTTCCGCTACCGCATGATGATGCACTCCCTCCTCCAGACGGATCTCCGCTTCGGGGTAATATACAGCGACGCCGTCTCCGGTACCGCCGACGTCGGCTGCATCGGCGAGGTCGTCAAGCACGAGCGCCTTGTCGACGACCGGTTCTTCCTCATCTGCAAGGGCCAGGAGCGGTTTCGGATCACCGACCTCGTCCGCACCAAACCCTACCTGGTGGCGGAGGTCAAGTGGCTTGAAGACCGGCCGTCGAGCGACGGCGAGGACGACCTGGAAGCGTTGGCGAACGAGGTCGAGTCGCATATGAAGGATGTGATTCGGTTGTCCAATCGGTTGGGCGGGAAGCCCGATAAGGATGTGCAGGACCTGCGGCGGCACCTATTTCCGACGCTATTTTCGTTTTTTGTTGGGAGCACGTTTGAAGGGGCGCCGAGAGAGCAGCAGGCGTTGCTGGAATTGGAGGACACGGCGGCGCGGTTGAAGAGAGAGAAGGAGACGCTGAGGAACACTCTCAATTACTTGACGGCGGCCTCCGCCGTCAAAGACGTCTTCCCGTCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

7.06

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 74 - 261 6.3e-29 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 216, 381, 831
Acc36I ACCTGC 1 cut(s) 657
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 4 cut(s) 260, 368, 657, 709
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 757
AclWI GGATC 4 cut(s) 141, 154, 336, 473
AcoI YGGCCR 1 cut(s) 527
AcyI GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 5 cut(s) 206, 256, 325, 340, 502
AgeI ACCGGT 1 cut(s) 426
AgsI TTSAA 4 cut(s) 64, 521, 704, 763
AhdI GACNNNNNGTC 1 cut(s) 529
AjnI CCWGG 3 cut(s) 450, 495, 552
AluBI AGCT 2 cut(s) 16, 223
AluI AGCT 2 cut(s) 16, 223
Alw21I GWGCWC 2 cut(s) 225, 698
Alw26I GTCTC 2 cut(s) 367, 770
AlwI GGATC 4 cut(s) 141, 154, 336, 473
AlwNI CAGNNNCTG 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 4 cut(s) 140, 448, 527, 810
ApeKI GCWGC 3 cut(s) 129, 384, 721
ArsI GACNNNNNNTTYG 2 cut(s) 661, 693
AsiGI ACCGGT 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 368
AspLEI GCGC 5 cut(s) 183, 263, 414, 712, 757
AspS9I GGNCC 3 cut(s) 141, 448, 646
AsuC2I CCSGG 3 cut(s) 144, 257, 258
AsuHPI GGTGA 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 646
BamHI GGATCC 1 cut(s) 146
BanI GGYRCC 4 cut(s) 260, 368, 657, 709
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 407
BbsI GAAGAC 2 cut(s) 528, 823
Bbv12I GWGCWC 2 cut(s) 225, 698
BbvCI CCTCAGC 2 cut(s) 12, 782
BbvI GCAGC 3 cut(s) 116, 371, 733
BccI CCATC 1 cut(s) 272
BceAI ACGGC 7 cut(s) 155, 344, 514, 556, 765, 803, 822
BciT130I CCWGG 3 cut(s) 452, 497, 554
BcnI CCSGG 3 cut(s) 144, 257, 258
BcoDI GTCTC 2 cut(s) 367, 770
BfoI RGCGCY 4 cut(s) 184, 264, 415, 713
BfuAI ACCTGC 1 cut(s) 657
BglII AGATCT 1 cut(s) 279
BisI GCNGC 8 cut(s) 130, 133, 385, 653, 656, 722, 753, 810
BlsI GCNGC 8 cut(s) 131, 134, 386, 654, 657, 723, 754, 811
Bme1390I CCNGG 6 cut(s) 144, 257, 258, 452, 497, 554
Bme18I GGWCC 1 cut(s) 646
BmeRI GACNNNNNGTC 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 141, 448, 646
BmiI GGNNCC 5 cut(s) 148, 262, 370, 659, 711
BmrFI CCNGG 6 cut(s) 144, 257, 258, 452, 497, 554
BmsI GCATC 2 cut(s) 297, 396
BpiI GAAGAC 2 cut(s) 528, 823
BplI GAGNNNNNCTC 2 cut(s) 775, 807
BpmI CTGGAG 2 cut(s) 260, 305
Bpu10I CCTNAGC 2 cut(s) 12, 782
BpuMI CCSGG 3 cut(s) 144, 257, 258
BsaHI GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 2 cut(s) 365, 426
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 497, 527
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 256, 325, 340, 502
Bse118I RCCGGY 2 cut(s) 426, 525
BseBI CCWGG 3 cut(s) 452, 497, 554
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 4 cut(s) 18, 264, 598, 643
BseLI CCNNNNNNNGG 5 cut(s) 206, 256, 325, 340, 502
BseMII CTCAG 3 cut(s) 26, 168, 773
BseRI GAGGAG 5 cut(s) 16, 25, 28, 157, 308
BseX3I CGGCCG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 116, 371, 733
BsgI GTGCAG 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 757
Bsh1285I CGRYCG 2 cut(s) 427, 530
BshFI GGCC 4 cut(s) 142, 450, 529, 812
BshNI GGYRCC 4 cut(s) 260, 368, 657, 709
BshTI ACCGGT 1 cut(s) 426
BsiEI CGRYCG 2 cut(s) 427, 530
BsiHKAI GWGCWC 2 cut(s) 225, 698
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 5 cut(s) 144, 257, 366, 427, 526
BslI CCNNNNNNNGG 5 cut(s) 206, 256, 325, 340, 502
BsmAI GTCTC 2 cut(s) 367, 770
BsmBI CGTCTC 2 cut(s) 367, 770
BsnI GGCC 4 cut(s) 142, 450, 529, 812
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 225, 698
Bsp143I GATC 4 cut(s) 146, 279, 328, 465
BspANI GGCC 4 cut(s) 142, 450, 529, 812
BspCNI CTCAG 3 cut(s) 25, 169, 774
BspFNI CGCG 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 148, 262, 370, 659, 711
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 4 cut(s) 141, 154, 336, 473
BspT107I GGYRCC 4 cut(s) 260, 368, 657, 709
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 426, 525
BssAI RCCGGY 2 cut(s) 426, 525
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 146, 279, 328, 465
BssNI GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
BssSI CACGAG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 3 cut(s) 452, 497, 554
Bst6I CTCTTC 3 cut(s) 34, 257, 758
BstACI GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
BstAPI GCANNNNNTGC 2 cut(s) 649, 730
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 3 cut(s) 12, 177, 782
BstF5I GGATG 4 cut(s) 18, 264, 598, 643
BstFNI CGCG 1 cut(s) 757
BstH2I RGCGCY 4 cut(s) 184, 264, 415, 713
BstHHI GCGC 5 cut(s) 183, 263, 414, 712, 757
BstKTI GATC 4 cut(s) 149, 282, 331, 468
BstMAI GTCTC 2 cut(s) 367, 770
BstMBI GATC 4 cut(s) 146, 279, 328, 465
BstMCI CGRYCG 2 cut(s) 427, 530
BstMWI GCNNNNNNNGC 6 cut(s) 126, 390, 649, 718, 730, 815
BstNI CCWGG 3 cut(s) 452, 497, 554
BstSCI CCNGG 6 cut(s) 142, 255, 256, 450, 495, 552
BstUI CGCG 1 cut(s) 757
BstV1I GCAGC 3 cut(s) 116, 371, 733
BstV2I GAAGAC 2 cut(s) 528, 823
BstX2I RGATCY 3 cut(s) 146, 279, 328
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 3 cut(s) 146, 279, 328
BstZI CGGCCG 1 cut(s) 527
BsuRI GGCC 4 cut(s) 142, 450, 529, 812
BtsCI GGATG 4 cut(s) 18, 264, 598, 643
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 726
CaiI CAGNNNCTG 1 cut(s) 649
CfoI GCGC 5 cut(s) 183, 263, 414, 712, 757
Cfr10I RCCGGY 2 cut(s) 426, 525
Cfr13I GGNCC 3 cut(s) 141, 448, 646
Cfr9I CCCGGG 1 cut(s) 256
CseI GACGC 3 cut(s) 365, 679, 787
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 1 cut(s) 369
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 1 cut(s) 301
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 3 cut(s) 12, 177, 782
DinI GGCGCC 2 cut(s) 262, 711
DpnI GATC 4 cut(s) 148, 281, 330, 467
DpnII GATC 4 cut(s) 146, 279, 328, 465
DriI GACNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 527
EagI CGGCCG 1 cut(s) 527
Eam1104I CTCTTC 3 cut(s) 34, 257, 758
Eam1105I GACNNNNNGTC 1 cut(s) 529
EarI CTCTTC 3 cut(s) 34, 257, 758
EciI GGCGGA 2 cut(s) 518, 805
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 646
Eco52I CGGCCG 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 450, 495, 552
EcoT38I GRGCYC 1 cut(s) 225
EgeI GGCGCC 2 cut(s) 262, 711
EheI GGCGCC 2 cut(s) 262, 711
Esp3I CGTCTC 2 cut(s) 367, 770
FaeI CATG 1 cut(s) 304
FaiI YATR 5 cut(s) 51, 302, 349, 585, 587
FatI CATG 1 cut(s) 300
FauI CCCGC 2 cut(s) 125, 614
FauNDI CATATG 1 cut(s) 585
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 8 cut(s) 130, 133, 385, 653, 656, 722, 753, 810
FokI GGATG 4 cut(s) 5, 251, 605, 650
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 8 cut(s) 130, 133, 385, 653, 656, 722, 753, 810
GlaI GCGC 5 cut(s) 182, 262, 413, 711, 756
GluI GCNGC 8 cut(s) 130, 133, 385, 653, 656, 722, 753, 810
GsuI CTGGAG 2 cut(s) 260, 305
HaeII RGCGCY 4 cut(s) 184, 264, 415, 713
HaeIII GGCC 4 cut(s) 142, 450, 529, 812
HapII CCGG 5 cut(s) 144, 257, 366, 427, 526
HgaI GACGC 3 cut(s) 365, 679, 787
HhaI GCGC 5 cut(s) 183, 263, 414, 712, 757
Hin1I GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 5 cut(s) 181, 261, 412, 710, 755
HinP1I GCGC 5 cut(s) 181, 261, 412, 710, 755
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 578, 598
HpaII CCGG 5 cut(s) 144, 257, 366, 427, 526
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 178, 465, 669
Hpy188III TCNNGA 2 cut(s) 277, 322
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 4 cut(s) 70, 583, 698, 766
HpyCH4IV ACGT 4 cut(s) 213, 378, 698, 828
HpyCH4V TGCA 5 cut(s) 159, 310, 387, 444, 643
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 390, 649, 718, 730, 815
HpyF3I CTNAG 3 cut(s) 12, 177, 782
HpySE526I ACGT 4 cut(s) 213, 378, 698, 828
Hsp92I GRCGYC 6 cut(s) 213, 261, 357, 378, 710, 828
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 5 cut(s) 181, 261, 412, 710, 755
KasI GGCGCC 2 cut(s) 260, 709
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 4 cut(s) 146, 279, 328, 465
LmnI GCTCC 3 cut(s) 228, 454, 693
Lsp1109I GCAGC 3 cut(s) 116, 371, 733
LweI GCATC 2 cut(s) 297, 396
MabI ACCWGGT 1 cut(s) 495
MaeII ACGT 4 cut(s) 213, 378, 698, 828
MalI GATC 4 cut(s) 148, 281, 330, 467
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 146, 279, 328, 465
MboII GAAGA 7 cut(s) 21, 244, 274, 424, 533, 775, 823
MflI RGATCY 3 cut(s) 146, 279, 328
MhlI GDGCHC 2 cut(s) 225, 698
MluCI AATT 2 cut(s) 737, 796
Mly113I GGCGCC 2 cut(s) 261, 710
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 692
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 5 cut(s) 144, 257, 366, 427, 526
MspR9I CCNGG 6 cut(s) 144, 257, 258, 452, 497, 554
MvaI CCWGG 3 cut(s) 452, 497, 554
MvnI CGCG 1 cut(s) 757
MwoI GCNNNNNNNGC 6 cut(s) 126, 390, 649, 718, 730, 815
NarI GGCGCC 2 cut(s) 261, 710
NciI CCSGG 3 cut(s) 144, 257, 258
NdeI CATATG 1 cut(s) 585
NdeII GATC 4 cut(s) 146, 279, 328, 465
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 5 cut(s) 148, 262, 370, 659, 711
NmeAIII GCCGAG 1 cut(s) 738
PcsI WCGNNNNNNNCGW 4 cut(s) 396, 405, 546, 677
PfeI GAWTC 1 cut(s) 598
PflFI GACNNNGTC 3 cut(s) 215, 359, 476
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 8 cut(s) 131, 134, 386, 654, 657, 723, 754, 811
PleI GAGTC 1 cut(s) 586
PluTI GGCGCC 2 cut(s) 264, 713
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 646
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 450, 495, 552
PspGI CCWGG 3 cut(s) 450, 495, 552
PspN4I GGNNCC 5 cut(s) 148, 262, 370, 659, 711
PspPI GGNCC 3 cut(s) 141, 448, 646
PspPPI RGGWCCY 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 649
PsuI RGATCY 3 cut(s) 146, 279, 328
PsyI GACNNNGTC 3 cut(s) 215, 359, 476
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 8 cut(s) 130, 133, 385, 653, 656, 722, 753, 810
Sau3AI GATC 4 cut(s) 146, 279, 328, 465
Sau96I GGNCC 3 cut(s) 141, 448, 646
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 6 cut(s) 144, 257, 258, 452, 497, 554
SduI GDGCHC 2 cut(s) 225, 698
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 2 cut(s) 297, 396
SfoI GGCGCC 2 cut(s) 262, 711
SinI GGWCC 1 cut(s) 646
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 2 cut(s) 737, 796
SspDI GGCGCC 2 cut(s) 260, 709
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 6 cut(s) 142, 255, 256, 450, 495, 552
TaiI ACGT 4 cut(s) 216, 381, 701, 831
TaqI TCGA 5 cut(s) 219, 285, 420, 533, 576
TasI AATT 2 cut(s) 737, 796
TauI GCSGC 5 cut(s) 135, 655, 658, 755, 812
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 3 cut(s) 129, 384, 721
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 1 cut(s) 341
TspMI CCCGGG 1 cut(s) 256
Tth111I GACNNNGTC 3 cut(s) 215, 359, 476
VpaK11BI GGWCC 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmaI CCCGGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 3 cut(s) 214, 379, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.