Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010997

Physical Location & Seq

Genomic Coordinates Forward (+)

7238693 .. 7239698

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20823.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTCGCCTTCTCTTTCGTCTTCTCGTAGAATCCAACACTCCGTCTCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCTGATCTCGTCGTCATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGCGTTCTCGGCTTAATCGCCGTTTCTCGATGTGTCTGGCTCCGTCGTCTCGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAACTCAATCTCCTCAACCTCCGGTGGCAGCGGCGAACAAAGGCCTGAAGAAGAAAGTCCTTCAATCTCTCCCGAAGCTTACGTTCTCGCCAGAGTCACCTGAGTCGGAGAAATTCGCAGAGTGCGCGATCTGTCTAGCTGAATTCTCTGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCACGGGTTCCACGTGGCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGCCCTTCTTGCCGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGAGGTTTACCCGGTAGCTCTAGCTCCGGACTTGAATCCGAACCCGAAATCGAGATCCGAATCAAGCAAGGCGAAGATGACCCCAACTCCTTCTTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

197

Amino Acids

20.92

Weight (kDa)

6.87

Isoelectric Point (pI)

76.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	110 - 153	2e-15	Ring finger domain
zf-RING_11	PF17123	110 - 139	3.8e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	110 - 152	1.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	111 - 152	6.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	111 - 150	6.1e-06	RING-type zinc-finger
zf-ANAPC11	PF12861	121 - 159	3.4e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	123 - 153	4.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20823 AT1G76410
fragaria_vesca	FvH4_1g10140
malus_domestica	MD02G1113400.v1.1 MD06G1005400.v1.1 MD15G1228600.v1.1
prunus_persica	Prupe.5G006700_v2.0.a1 Prupe.7G185500_v2.0.a1
pyrus_communis	pycom02g08840
rosa_chinensis	RchiOBHm_Chr2g0096911
rosa_laevigata	RLG00000016682
rosa_multiflora	Rmu_sc0033632.1_g000003 Rmu_ssc0000215.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145160
rosa_rugosa	Rorug02G0061800
rosa_samantha	Rh2AG109800 Rh2BG111700 Rh2CG113800 Rh2DG112900
rosa_wichuraiana	Rw2G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	74, 335
AccIII	TCCGGA	2 cut(s)	200, 518
AciI	CCGC	4 cut(s)	69, 72, 239, 383
AclWI	GGATC	3 cut(s)	211, 439, 541
AcsI	RAATTY	3 cut(s)	79, 320, 350
AcuI	CTGAAG	1 cut(s)	275
AcvI	CACGTG	2 cut(s)	406, 423
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	79, 272, 527
AjnI	CCWGG	1 cut(s)	476
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	286, 347, 370, 510, 516
AluI	AGCT	5 cut(s)	286, 347, 370, 510, 516
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	51, 179, 202
AlwI	GGATC	3 cut(s)	211, 439, 541
Aor13HI	TCCGGA	2 cut(s)	200, 518
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	3 cut(s)	104, 179, 236
ApoI	RAATTY	3 cut(s)	79, 320, 350
AspLEI	GCGC	2 cut(s)	119, 335
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	372
BbrPI	CACGTG	2 cut(s)	406, 423
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	91, 191, 248
BceAI	ACGGC	2 cut(s)	131, 441
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	51, 179, 202
BfaI	CTAG	3 cut(s)	344, 428, 513
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	5 cut(s)	72, 105, 180, 237, 240
BlsI	GCNGC	5 cut(s)	73, 106, 181, 238, 241
Bme1390I	CCNGG	2 cut(s)	478, 504
BmiI	GGNNCC	2 cut(s)	167, 401
BmrFI	CCNGG	2 cut(s)	478, 504
BpiI	GAAGAC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	504
BsaAI	YACGTR	2 cut(s)	406, 423
BsaBI	GATNNNNATC	1 cut(s)	551
BsaWI	WCCGGW	3 cut(s)	200, 229, 518
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 202, 232, 563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	551
BseAI	TCCGGA	2 cut(s)	200, 518
BseBI	CCWGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	101, 210
BseXI	GCAGC	3 cut(s)	91, 191, 248
Bsh1236I	CGCG	2 cut(s)	74, 335
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	7 cut(s)	50, 183, 201, 230, 360, 504, 519
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	51, 179, 202
BsmBI	CGTCTC	2 cut(s)	51, 179
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	2 cut(s)	200, 518
Bsp143I	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
BspACI	CCGC	4 cut(s)	69, 72, 239, 383
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	2 cut(s)	200, 518
BspFNI	CGCG	2 cut(s)	74, 335
BspLI	GGNNCC	2 cut(s)	167, 401
BspPI	GGATC	3 cut(s)	211, 439, 541
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssMI	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	2 cut(s)	406, 423
BstC8I	GCNNGC	3 cut(s)	7, 361, 412
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	2 cut(s)	74, 335
BstHHI	GCGC	2 cut(s)	119, 335
BstKTI	GATC	6 cut(s)	88, 206, 339, 434, 465, 549
BstMAI	GTCTC	3 cut(s)	51, 179, 202
BstMBI	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 332, 453
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	476, 502
BstUI	CGCG	2 cut(s)	74, 335
BstV1I	GCAGC	3 cut(s)	91, 191, 248
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	4 cut(s)	203, 431, 462, 546
BstYI	RGATCY	4 cut(s)	203, 431, 462, 546
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	3 cut(s)	7, 361, 412
CfoI	GCGC	2 cut(s)	119, 335
Cfr10I	RCCGGY	1 cut(s)	359
CspCI	CAANNNNNGTGG	2 cut(s)	392, 427
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	6 cut(s)	87, 205, 338, 433, 464, 548
DpnII	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
Ecl136II	GAGCTC	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	275
Eco72I	CACGTG	2 cut(s)	406, 423
EcoICRI	GAGCTC	1 cut(s)	370
EcoRI	GAATTC	2 cut(s)	79, 350
EcoRII	CCWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	2 cut(s)	51, 179
FaiI	YATR	1 cut(s)	592
Fnu4HI	GCNGC	5 cut(s)	72, 105, 180, 237, 240
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	5 cut(s)	72, 105, 180, 237, 240
FspBI	CTAG	3 cut(s)	344, 428, 513
GlaI	GCGC	2 cut(s)	118, 334
GluI	GCNGC	5 cut(s)	72, 105, 180, 237, 240
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	7 cut(s)	50, 183, 201, 230, 360, 504, 519
HhaI	GCGC	2 cut(s)	119, 335
Hin6I	GCGC	2 cut(s)	117, 333
HinP1I	GCGC	2 cut(s)	117, 333
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	5 cut(s)	32, 302, 311, 527, 552
HpaII	CCGG	7 cut(s)	50, 183, 201, 230, 360, 504, 519
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	6 cut(s)	85, 316, 374, 462, 532, 551
Hpy188III	TCNNGA	5 cut(s)	153, 201, 280, 519, 544
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	3 cut(s)	95, 174, 368
HpyAV	CCTTC	4 cut(s)	20, 278, 459, 592
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	290, 405, 422
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 332, 453
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	3 cut(s)	290, 405, 422
HspAI	GCGC	2 cut(s)	117, 333
Kpn2I	TCCGGA	2 cut(s)	200, 518
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Kzo9I	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
LmnI	GCTCC	3 cut(s)	171, 375, 521
Lsp1109I	GCAGC	3 cut(s)	91, 191, 248
MaeI	CTAG	3 cut(s)	344, 428, 513
MaeII	ACGT	3 cut(s)	290, 405, 422
MaeIII	GTNAC	3 cut(s)	303, 392, 482
MalI	GATC	6 cut(s)	87, 205, 338, 433, 464, 548
MboI	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
MboII	GAAGA	4 cut(s)	14, 268, 271, 578
MflI	RGATCY	4 cut(s)	203, 431, 462, 546
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	3 cut(s)	79, 320, 350
MlyI	GAGTC	2 cut(s)	311, 320
MmeI	TCCRAC	2 cut(s)	60, 294
MnlI	CCTC	5 cut(s)	110, 122, 231, 237, 488
MroI	TCCGGA	2 cut(s)	200, 518
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	7 cut(s)	50, 183, 201, 230, 360, 504, 519
MspR9I	CCNGG	2 cut(s)	478, 504
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	2 cut(s)	74, 335
MwoI	GCNNNNNNNGC	3 cut(s)	135, 332, 453
NaeI	GCCGGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
NgoMIV	GCCGGC	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	167, 401
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	303, 392, 482
OliI	CACNNNNGTG	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdiI	GCCGGC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	32, 527, 552
PkrI	GCNGC	5 cut(s)	73, 106, 181, 238, 241
PleI	GAGTC	2 cut(s)	310, 319
PmaCI	CACGTG	2 cut(s)	406, 423
PmlI	CACGTG	2 cut(s)	406, 423
PpsI	GAGTC	2 cut(s)	310, 319
Ppu21I	YACGTR	2 cut(s)	406, 423
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	476
PspCI	CACGTG	2 cut(s)	406, 423
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	167, 401
PsuI	RGATCY	4 cut(s)	203, 431, 462, 546
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	5 cut(s)	72, 105, 180, 237, 240
Sau3AI	GATC	6 cut(s)	85, 203, 336, 431, 462, 546
SchI	GAGTC	2 cut(s)	311, 320
ScrFI	CCNGG	2 cut(s)	478, 504
SduI	GDGCHC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	3 cut(s)	79, 320, 350
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	4 cut(s)	69, 72, 239, 383
SspMI	CTAG	3 cut(s)	344, 428, 513
SstI	GAGCTC	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	476, 502
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	293, 408, 425
TaqI	TCGA	2 cut(s)	154, 543
TasI	AATT	3 cut(s)	79, 320, 350
TauI	GCSGC	2 cut(s)	74, 242
TfiI	GAWTC	3 cut(s)	32, 527, 552
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	3 cut(s)	303, 392, 482
TseI	GCWGC	3 cut(s)	104, 179, 236
Tsp45I	GTSAC	3 cut(s)	303, 392, 482
TspGWI	ACGGA	2 cut(s)	33, 158
TspRI	CASTG	1 cut(s)	392
XapI	RAATTY	3 cut(s)	79, 320, 350
XspI	CTAG	3 cut(s)	344, 428, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.