Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010997

Physical Location & Seq

Genomic Coordinates Reverse (-)

740536 .. 741482

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACTCGTCCTCTGCGACTGTTAGGCGGCGCCTTTAACCCTCCCGCGCTGTTTTCCGAACCCGACGATGAATCGTCAGCCAACATGGGCTCCGACTCCGCTTTGATCCTCCTCGCCCTCTTCTGCGCTCTCGTCTGCGTCCTCGGCCTCCTCGTCGTGGCTCGCTGCGTCTGGCTCCGCCGCCTCGCAACCGCTGCCACACCTCCTCCTCCTCCTCCGCTGCCGACTCCTCCGCCGAACAAGGGGTTGAAGAAGAAAATCCTACGCTCACTCCCGAAGCTCACTTACACGGCGGACTGCACTTCCAAGTTCACCGAGTGCGCCATCTGCCTCACCGAGTTCGCCGCCGGAGACGAGATCCGGGAGCTGCCGCAGTGCGGCCACCGCTTCCACGTGGCTTGCATCGACGTATGGCTGCGATCGCACTCGTCCTGCCCCTCCTGCCGTCAGATTCCGGAGGTTTCCAGTAAGTGCCACAAGTGTGGCGGCTTCCCTTCTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

18.13

Weight (kDa)

8.64

Isoelectric Point (pI)

73.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20823 AT1G76410
fragaria_vesca	FvH4_1g10140
malus_domestica	MD02G1113400.v1.1 MD06G1005400.v1.1 MD15G1228600.v1.1
prunus_persica	Prupe.5G006700_v2.0.a1 Prupe.7G185500_v2.0.a1
pyrus_communis	pycom02g08840
rosa_chinensis	RchiOBHm_Chr2g0096911
rosa_laevigata	RLG00000016682
rosa_multiflora	Rmu_sc0033632.1_g000003 Rmu_ssc0000215.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145160
rosa_rugosa	Rorug02G0061800
rosa_samantha	Rh2AG109800 Rh2BG111700 Rh2CG113800 Rh2DG112900
rosa_wichuraiana	Rw2G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	454
AclWI	GGATC	2 cut(s)	100, 352
AcoI	YGGCCR	1 cut(s)	379
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	318
AfiI	CCNNNNNNNGG	3 cut(s)	157, 242, 377
AgsI	TTSAA	1 cut(s)	250
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	280, 367
AluI	AGCT	2 cut(s)	280, 367
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	100, 352
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	145, 379
ApeKI	GCWGC	5 cut(s)	165, 194, 220, 367, 415
AsiSI	GCGATCGC	1 cut(s)	422
AspLEI	GCGC	4 cut(s)	32, 49, 128, 323
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	304, 325
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbrPI	CACGTG	1 cut(s)	394
BbvI	GCAGC	5 cut(s)	152, 181, 207, 354, 402
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	306, 429
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	31, 91, 176
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 190, 220, 255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 242, 377
Bse1I	ACTGG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	157, 242, 377
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	7 cut(s)	101, 140, 195, 198, 201, 204, 219
BseXI	GCAGC	5 cut(s)	152, 181, 207, 354, 402
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	147, 381
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	348, 361, 455
BslI	CCNNNNNNNGG	3 cut(s)	157, 242, 377
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	147, 381
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	105, 357, 419
BspANI	GGCC	2 cut(s)	147, 381
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	3 cut(s)	31, 91, 176
BspPI	GGATC	2 cut(s)	100, 352
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	3 cut(s)	105, 357, 419
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	163, 400
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	4 cut(s)	32, 49, 128, 323
BstKTI	GATC	3 cut(s)	108, 360, 422
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	105, 357, 419
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 194, 327, 384, 421, 441
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	5 cut(s)	152, 181, 207, 354, 402
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	147, 381
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	163, 400
CfoI	GCGC	4 cut(s)	32, 49, 128, 323
CseI	GACGC	2 cut(s)	127, 157
CspCI	CAANNNNNGTGG	2 cut(s)	380, 415
CviAII	CATG	1 cut(s)	85
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	3 cut(s)	107, 359, 421
DpnII	GATC	3 cut(s)	105, 357, 419
DraIII	CACNNNGTG	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	3 cut(s)	167, 222, 308
Eco24I	GRGCYC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 412
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	92
GlaI	GCGC	4 cut(s)	31, 48, 127, 322
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	147, 381
HapII	CCGG	3 cut(s)	348, 361, 455
HgaI	GACGC	2 cut(s)	127, 157
HhaI	GCGC	4 cut(s)	32, 49, 128, 323
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	4 cut(s)	30, 47, 126, 321
HinP1I	GCGC	4 cut(s)	30, 47, 126, 321
HinfI	GANTC	5 cut(s)	4, 71, 95, 226, 451
HpaII	CCGG	3 cut(s)	348, 361, 455
HphI	GGTGA	2 cut(s)	304, 325
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	58, 94, 450
Hpy188III	TCNNGA	2 cut(s)	274, 455
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	3 cut(s)	68, 158, 410
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	393, 408
HpyCH4V	TGCA	2 cut(s)	300, 402
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 194, 327, 384, 421, 441
HpySE526I	ACGT	2 cut(s)	393, 408
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	4 cut(s)	30, 47, 126, 321
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	105, 357, 419
LmnI	GCTCC	3 cut(s)	95, 180, 364
LpnPI	CCDG	7 cut(s)	157, 361, 374, 445, 454, 468, 478
Lsp1109I	GCAGC	5 cut(s)	152, 181, 207, 354, 402
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	2 cut(s)	393, 408
MalI	GATC	3 cut(s)	107, 359, 421
MboI	GATC	3 cut(s)	105, 357, 419
MboII	GAAGA	3 cut(s)	112, 262, 265
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	89, 220
MmeI	TCCRAC	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	454
MseI	TTAA	2 cut(s)	36, 505
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	194, 220
MspI	CCGG	3 cut(s)	348, 361, 455
MspR9I	CCNGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	6 cut(s)	144, 194, 327, 384, 421, 441
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	105, 357, 419
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	31, 91, 176
NmeAIII	GCCGAG	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 150
PfeI	GAWTC	2 cut(s)	71, 451
PfoI	TCCNGGA	1 cut(s)	360
Ple19I	CGATCG	1 cut(s)	422
PleI	GAGTC	2 cut(s)	89, 220
PluTI	GGCGCC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	2 cut(s)	89, 220
Ppu21I	YACGTR	1 cut(s)	394
PspCI	CACGTG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	31, 91, 176
PsuI	RGATCY	1 cut(s)	357
PvuI	CGATCG	1 cut(s)	422
RgaI	GCGATCGC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	36, 505
Sau3AI	GATC	3 cut(s)	105, 357, 419
SchI	GAGTC	2 cut(s)	89, 220
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	205, 282, 369, 396, 411, 462
SfaAI	GCGATCGC	1 cut(s)	422
SfaNI	GCATC	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	31
SgfI	GCGATCGC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	480
SspDI	GGCGCC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	2 cut(s)	396, 411
TaqI	TCGA	1 cut(s)	405
TauI	GCSGC	6 cut(s)	30, 183, 347, 373, 381, 489
TfiI	GAWTC	2 cut(s)	71, 451
Tru1I	TTAA	2 cut(s)	36, 505
Tru9I	TTAA	2 cut(s)	36, 505
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	5 cut(s)	165, 194, 220, 367, 415
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.