Rroxscaffold_2G00145160

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010997
Physical Location & Seq
Forward (+)
83052036 .. 83052653
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145160.1

Sequence Viewer

Length: 618 bp
ATGAAGTACACCGCCGCGCCGCCTCCTGAGGCCGTGACCTTGGAATCCGACTTTGTTGTTATCCTGGCGGCGCTTTTATGCGCAGTCATATGCGTGGTGGGCCTGCTCGCCGTGGCGCGCTGCGCCTGGCTGCGACGCGCGCCAGGCGGGGCCCGGGCAGGTGAACCCGGCTCCGCACAGGCCTCCTCTGCCAACAAGGGGCTGAAAAAGAAGGTCCTGCAGCAGCTCCCCAAGTTCATCTACGGCGACGGCGGACCGTCGGCGCCGCCGCCGAAGATGGGGTCGGAGTGCGCCATATGCCTCGGCGAGTTCGCGGAGGGCGACGAGATTAGGGTTCTGCCCCAGTGCGGGCATGTTTTCCACGTCGGATGCATCGACACGTGGCTAGGGTCCCACTCGTCGTGTCCGTCGTGTCGGCAGATCCTGGTGGTGGCGCGGTGTCACAAGTGCGGCAACTTCCCCGCCATTTCTGACGCTGAGCTCAAAATTCGGCAAGATCATATTTACCATTCTGCCCCTCCGCCACTCGCCTTGGCCGCCGCCGCCACAACTACTAGTTGTAGTAGCAGCAGCAGTAATAGTAATAGTAATAGTAAGAGTATTATTTTCTTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

205

Amino Acids

21.37

Weight (kDa)

8.46

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 96 - 139 5.4e-16 Ring finger domain
zf-RING_11 PF17123 96 - 125 1e-12 RING-like zinc finger
zf-C3HC4_2 PF13923 96 - 138 2.9e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 96 - 140 7.9e-07 zinc-RING finger domain
zf-C3HC4 PF00097 97 - 138 4.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 97 - 136 9.1e-07 RING-type zinc-finger
zf-rbx1 PF12678 105 - 139 1.9e-07 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 107 - 145 3.9e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc16I TGCGCA 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 486
AcvI CACGTG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 5 cut(s) 198, 278, 347, 348, 430
AflIII ACRYGT 1 cut(s) 378
AhlI ACTAGT 1 cut(s) 554
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 4 cut(s) 63, 125, 142, 423
AluBI AGCT 2 cut(s) 226, 481
AluI AGCT 2 cut(s) 226, 481
Alw21I GWGCWC 1 cut(s) 483
AlwI GGATC 1 cut(s) 415
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 5 cut(s) 30, 100, 150, 180, 534
ApaI GGGCCC 1 cut(s) 154
ApeKI GCWGC 6 cut(s) 120, 130, 220, 223, 567, 570
ApoI RAATTY 1 cut(s) 486
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspS9I GGNCC 6 cut(s) 100, 150, 151, 214, 254, 390
AsuC2I CCSGG 3 cut(s) 154, 155, 168
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 3 cut(s) 214, 254, 390
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 154, 483
BbrPI CACGTG 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 6 cut(s) 107, 117, 232, 235, 579, 582
BccI CCATC 1 cut(s) 271
BceAI ACGGC 4 cut(s) 17, 95, 259, 265
BciT130I CCWGG 4 cut(s) 65, 127, 144, 425
BcnI CCSGG 3 cut(s) 154, 155, 168
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 386, 555
BfmI CTRYAG 1 cut(s) 218
BfoI RGCGCY 2 cut(s) 74, 266
BfuAI ACCTGC 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 477
Bme1390I CCNGG 7 cut(s) 65, 127, 144, 154, 155, 168, 425
Bme18I GGWCC 3 cut(s) 214, 254, 390
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 6 cut(s) 100, 150, 151, 214, 254, 390
BmiI GGNNCC 6 cut(s) 151, 152, 172, 264, 391, 392
BmrFI CCNGG 7 cut(s) 65, 127, 144, 154, 155, 168, 425
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 359, 381
BmuI ACTGGG 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 3 cut(s) 154, 155, 168
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 5 cut(s) 39, 111, 153, 301, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 278, 347, 348, 430
Bse1I ACTGG 1 cut(s) 343
Bse21I CCTNAGG 1 cut(s) 27
BseBI CCWGG 4 cut(s) 65, 127, 144, 425
BseDI CCNNGG 5 cut(s) 39, 111, 153, 301, 531
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 5 cut(s) 198, 278, 347, 348, 430
BseMII CTCAG 2 cut(s) 18, 468
BseNI ACTGG 1 cut(s) 343
BsePI GCGCGC 2 cut(s) 116, 138
BseRI GAGGAG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 6 cut(s) 107, 117, 232, 235, 579, 582
Bsh1236I CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
BshFI GGCC 5 cut(s) 32, 102, 152, 182, 536
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 154, 168
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 5 cut(s) 198, 278, 347, 348, 430
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 5 cut(s) 32, 102, 152, 182, 536
BsoBI CYCGRG 1 cut(s) 153
Bsp120I GGGCCC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 154, 483
Bsp143I GATC 2 cut(s) 420, 496
Bsp1720I GCTNAGC 1 cut(s) 477
BspANI GGCC 5 cut(s) 32, 102, 152, 182, 536
BspCNI CTCAG 2 cut(s) 19, 469
BspFNI CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
BspLI GGNNCC 6 cut(s) 151, 152, 172, 264, 391, 392
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 5 cut(s) 39, 111, 153, 301, 531
BssHII GCGCGC 2 cut(s) 116, 138
BssMI GATC 2 cut(s) 420, 496
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 39, 531
Bst2UI CCWGG 4 cut(s) 65, 127, 144, 425
Bst4CI ACNGT 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 5 cut(s) 104, 108, 118, 140, 350
BstDEI CTNAG 2 cut(s) 27, 477
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 374
BstFNI CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
BstH2I RGCGCY 2 cut(s) 74, 266
BstKTI GATC 2 cut(s) 423, 499
BstMBI GATC 2 cut(s) 420, 496
BstMWI GCNNNNNNNGC 8 cut(s) 99, 122, 139, 144, 188, 297, 536, 542
BstNI CCWGG 4 cut(s) 65, 127, 144, 425
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 7 cut(s) 63, 125, 142, 152, 153, 166, 423
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
BstV1I GCAGC 6 cut(s) 107, 117, 232, 235, 579, 582
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 5 cut(s) 32, 102, 152, 182, 536
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 350
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 5 cut(s) 104, 108, 118, 140, 350
CaiI CAGNNNCTG 1 cut(s) 424
Cfr13I GGNCC 6 cut(s) 100, 150, 151, 214, 254, 390
Cfr9I CCCGGG 1 cut(s) 153
CpoI CGGWCCG 1 cut(s) 254
CseI GACGC 2 cut(s) 144, 482
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CspI CGGWCCG 1 cut(s) 254
CviAII CATG 1 cut(s) 353
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 27, 477
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 422, 498
DpnII GATC 2 cut(s) 420, 496
EaeI YGGCCR 1 cut(s) 534
EciI GGCGGA 2 cut(s) 267, 510
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 39, 531
Eco147I AGGCCT 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 154, 483
Eco47I GGWCC 3 cut(s) 214, 254, 390
Eco53kI GAGCTC 1 cut(s) 481
Eco72I CACGTG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 3 cut(s) 150, 214, 390
EcoRII CCWGG 4 cut(s) 63, 125, 142, 423
EcoT14I CCWWGG 2 cut(s) 39, 531
EcoT22I ATGCAT 1 cut(s) 374
EcoT38I GRGCYC 2 cut(s) 154, 483
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 39, 531
FaeI CATG 1 cut(s) 356
FaiI YATR 7 cut(s) 79, 89, 91, 296, 298, 354, 501
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 352
FauI CCCGC 3 cut(s) 140, 341, 469
FauNDI CATATG 2 cut(s) 89, 296
FokI GGATG 1 cut(s) 381
FriOI GRGCYC 2 cut(s) 154, 483
FspBI CTAG 2 cut(s) 386, 555
FspI TGCGCA 1 cut(s) 82
HaeII RGCGCY 2 cut(s) 74, 266
HaeIII GGCC 5 cut(s) 32, 102, 152, 182, 536
HapII CCGG 2 cut(s) 154, 168
HgaI GACGC 2 cut(s) 144, 482
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 1 cut(s) 356
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 154, 168
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 9, 164
Hpy188I TCNGA 4 cut(s) 49, 286, 368, 472
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 9, 164
Hpy99I CGWCG 7 cut(s) 138, 251, 262, 326, 368, 403, 412
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 2 cut(s) 363, 380
HpyCH4V TGCA 2 cut(s) 220, 372
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 122, 139, 144, 188, 297, 536, 542
HpyF3I CTNAG 2 cut(s) 27, 477
HpySE526I ACGT 2 cut(s) 363, 380
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 356
KasI GGCGCC 1 cut(s) 262
KflI GGGWCCC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 420, 496
LmnI GCTCC 2 cut(s) 176, 231
Lsp1109I GCAGC 6 cut(s) 107, 117, 232, 235, 579, 582
LweI GCATC 2 cut(s) 359, 381
MaeI CTAG 2 cut(s) 386, 555
MaeII ACGT 2 cut(s) 363, 380
MaeIII GTNAC 2 cut(s) 34, 440
MalI GATC 2 cut(s) 422, 498
MboI GATC 2 cut(s) 420, 496
MboII GAAGA 1 cut(s) 286
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 154, 483
MluCI AATT 1 cut(s) 486
Mly113I GGCGCC 1 cut(s) 263
MmeI TCCRAC 3 cut(s) 72, 264, 346
MnlI CCTC 7 cut(s) 22, 33, 193, 196, 310, 311, 528
Mph1103I ATGCAT 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 2 cut(s) 154, 168
MspR9I CCNGG 7 cut(s) 65, 127, 144, 154, 155, 168, 425
MteI GCGCNGCGC 1 cut(s) 121
MvaI CCWGG 4 cut(s) 65, 127, 144, 425
MvnI CGCG 6 cut(s) 17, 118, 138, 140, 314, 436
MwoI GCNNNNNNNGC 8 cut(s) 99, 122, 139, 144, 188, 297, 536, 542
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 3 cut(s) 154, 155, 168
NdeI CATATG 2 cut(s) 89, 296
NdeII GATC 2 cut(s) 420, 496
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 6 cut(s) 151, 152, 172, 264, 391, 392
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 34, 440
NsbI TGCGCA 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 356
PaqCI CACCTGC 1 cut(s) 149
PauI GCGCGC 2 cut(s) 116, 138
PceI AGGCCT 1 cut(s) 182
PcsI WCGNNNNNNNCGW 4 cut(s) 318, 372, 404, 407
PfeI GAWTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 266
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 2 cut(s) 214, 390
Psp124BI GAGCTC 1 cut(s) 483
Psp5II RGGWCCY 2 cut(s) 214, 390
Psp6I CCWGG 4 cut(s) 63, 125, 142, 423
PspCI CACGTG 1 cut(s) 381
PspGI CCWGG 4 cut(s) 63, 125, 142, 423
PspN4I GGNNCC 6 cut(s) 151, 152, 172, 264, 391, 392
PspOMI GGGCCC 1 cut(s) 150
PspPI GGNCC 6 cut(s) 100, 150, 151, 214, 254, 390
PspPPI RGGWCCY 2 cut(s) 214, 390
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 420
PteI GCGCGC 2 cut(s) 116, 138
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 92
Rsr2I CGGWCCG 1 cut(s) 254
RsrII CGGWCCG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 483
Sau3AI GATC 2 cut(s) 420, 496
Sau96I GGNCC 6 cut(s) 100, 150, 151, 214, 254, 390
ScrFI CCNGG 7 cut(s) 65, 127, 144, 154, 155, 168, 425
SduI GDGCHC 2 cut(s) 154, 483
SetI ASST 7 cut(s) 41, 163, 216, 228, 366, 383, 483
SfaNI GCATC 2 cut(s) 359, 381
SfcI CTRYAG 1 cut(s) 218
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 3 cut(s) 214, 254, 390
SmaI CCCGGG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 92
SpeI ACTAGT 1 cut(s) 554
SrfI GCCCGGGC 1 cut(s) 155
Sse9I AATT 1 cut(s) 486
SseBI AGGCCT 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 2 cut(s) 386, 555
SstI GAGCTC 1 cut(s) 483
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 7 cut(s) 63, 125, 142, 152, 153, 166, 423
StyI CCWWGG 2 cut(s) 39, 531
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 2 cut(s) 366, 383
TaqI TCGA 1 cut(s) 375
TasI AATT 1 cut(s) 486
TatI WGTACW 1 cut(s) 6
TauI GCSGC 9 cut(s) 17, 22, 71, 268, 271, 453, 539, 542, 545
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 2 cut(s) 34, 440
TseI GCWGC 6 cut(s) 120, 130, 220, 223, 567, 570
Tsp45I GTSAC 2 cut(s) 34, 440
TspDTI ATGAA 2 cut(s) 17, 226
TspGWI ACGGA 1 cut(s) 396
TspMI CCCGGG 1 cut(s) 153
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 214, 254, 390
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 356
XmaI CCCGGG 1 cut(s) 153
XspI CTAG 2 cut(s) 386, 555
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.