Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010997

Physical Location & Seq

Genomic Coordinates Forward (+)

28668664 .. 28669652

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGCGCCTTCTCTTCCGTCTTCTCCAAGAAGCCAATTCTACATCTCCGGCTGAAGCTTCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTTGCGGTTCTTCTTTGTGCACTGACATGTATCATCGGCTTAATAGCCGTCTCTCGATGCGCTTGGCTCCGCCGTATCGCCTCAAGAAACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCAGCCAACAAAGGATTGAAAAAGAAAGTCCTCCGGTCGTTACCGAAACTCACCTACTCGCCGGATTCTCCGCCGGCGGAGAAACTCGTGGAGTGTGCTATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTTAGGGTGTTGCCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCTTCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTACCAGGTGTCATAAATGTGGCGGGTTACCCGGTAGCTCAAGTTCAGGACCCGAACCCGATACCCGAATCAAACAACGTGAAGATGGTCCTGATAACTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

19.92

Weight (kDa)

8.69

Isoelectric Point (pI)

72.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 146	2.7e-15	Ring finger domain
zf-RING_11	PF17123	103 - 132	1.8e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 145	1.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	103 - 147	6.7e-06	zinc-RING finger domain
zf-C3HC4	PF00097	104 - 145	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	104 - 143	7.3e-06	RING-type zinc-finger
zf-ANAPC11	PF12861	114 - 151	4.2e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	115 - 146	8.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20823 AT1G76410
fragaria_vesca	FvH4_1g10140
malus_domestica	MD02G1113400.v1.1 MD06G1005400.v1.1 MD15G1228600.v1.1
prunus_persica	Prupe.5G006700_v2.0.a1 Prupe.7G185500_v2.0.a1
pyrus_communis	pycom02g08840
rosa_chinensis	RchiOBHm_Chr2g0096911
rosa_laevigata	RLG00000016682
rosa_multiflora	Rmu_sc0033632.1_g000003 Rmu_ssc0000215.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145160
rosa_rugosa	Rorug02G0061800
rosa_samantha	Rh2AG109800 Rh2BG111700 Rh2CG113800 Rh2DG112900
rosa_wichuraiana	Rw2G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	9 cut(s)	65, 98, 163, 206, 287, 293, 336, 362, 474
AclWI	GGATC	2 cut(s)	198, 418
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	2 cut(s)	119, 399
AgsI	TTSAA	2 cut(s)	73, 235
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	59, 215, 349, 489
AluI	AGCT	4 cut(s)	59, 215, 349, 489
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	148, 336
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	198, 418
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	215, 218
ApoI	RAATTY	1 cut(s)	329
AscI	GGCGCGCC	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	7, 9, 155
AspS9I	GGNCC	2 cut(s)	500, 539
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	500, 539
BaeGI	GKGCMC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	202, 230
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	3 cut(s)	125, 150, 420
BciT130I	CCWGG	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	148, 336
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	4 cut(s)	216, 219, 336, 362
BlsI	GCNGC	4 cut(s)	217, 220, 337, 363
Bme1390I	CCNGG	2 cut(s)	457, 483
Bme18I	GGWCC	2 cut(s)	500, 539
BmgT120I	GGNCC	2 cut(s)	500, 539
BmiI	GGNNCC	2 cut(s)	161, 502
BmrFI	CCNGG	2 cut(s)	457, 483
BmsI	GCATC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	160, 475
BpuMI	CCSGG	1 cut(s)	483
BsaAI	YACGTR	2 cut(s)	385, 402
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	2 cut(s)	208, 289
BseBI	CCWGG	1 cut(s)	457
BseGI	GGATG	2 cut(s)	90, 199
BseLI	CCNNNNNNNGG	1 cut(s)	368
BsePI	GCGCGC	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	202, 230
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	7 cut(s)	50, 209, 250, 278, 290, 339, 483
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	148, 336
BsmBI	CGTCTC	2 cut(s)	148, 336
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	185, 190, 410
BspACI	CCGC	9 cut(s)	65, 98, 163, 206, 287, 293, 336, 362, 474
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	161, 502
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	198, 418
BsrFI	RCCGGY	2 cut(s)	208, 289
BssAI	RCCGGY	2 cut(s)	208, 289
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	3 cut(s)	185, 190, 410
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	457
Bst6I	CTCTTC	2 cut(s)	20, 424
BstBAI	YACGTR	2 cut(s)	385, 402
BstC8I	GCNNGC	2 cut(s)	7, 291
BstDEI	CTNAG	1 cut(s)	350
BstEII	GGTNACC	2 cut(s)	451, 477
BstF5I	GGATG	2 cut(s)	90, 199
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	3 cut(s)	7, 9, 155
BstKTI	GATC	3 cut(s)	188, 193, 413
BstMAI	GTCTC	2 cut(s)	148, 336
BstMBI	GATC	3 cut(s)	185, 190, 410
BstMCI	CGRYCG	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	123
BstPI	GGTNACC	2 cut(s)	451, 477
BstSCI	CCNGG	2 cut(s)	455, 481
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	202, 230
BstV2I	GAAGAC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	90, 199
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	2 cut(s)	113, 371
Cac8I	GCNNGC	2 cut(s)	7, 291
CfoI	GCGC	3 cut(s)	7, 9, 155
Cfr10I	RCCGGY	2 cut(s)	208, 289
Cfr13I	GGNCC	2 cut(s)	500, 539
CsiI	ACCWGGT	1 cut(s)	455
CviAII	CATG	2 cut(s)	120, 374
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	3 cut(s)	187, 192, 412
DpnII	GATC	3 cut(s)	185, 190, 410
Eam1104I	CTCTTC	2 cut(s)	20, 424
EarI	CTCTTC	2 cut(s)	20, 424
EciI	GGCGGA	4 cut(s)	54, 152, 276, 308
Eco47I	GGWCC	2 cut(s)	500, 539
Eco57I	CTGAAG	1 cut(s)	75
Eco72I	CACGTG	1 cut(s)	402
Eco91I	GGTNACC	2 cut(s)	451, 477
EcoO109I	RGGNCCY	1 cut(s)	500
EcoO65I	GGTNACC	2 cut(s)	451, 477
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	455
Esp3I	CGTCTC	2 cut(s)	148, 336
FaeI	CATG	2 cut(s)	123, 377
FaiI	YATR	3 cut(s)	121, 375, 465
FatI	CATG	2 cut(s)	119, 373
FauI	CCCGC	1 cut(s)	467
Fnu4HI	GCNGC	4 cut(s)	216, 219, 336, 362
FokI	GGATG	2 cut(s)	77, 186
Fsp4HI	GCNGC	4 cut(s)	216, 219, 336, 362
GlaI	GCGC	3 cut(s)	6, 8, 154
GluI	GCNGC	4 cut(s)	216, 219, 336, 362
HapII	CCGG	7 cut(s)	50, 209, 250, 278, 290, 339, 483
HhaI	GCGC	3 cut(s)	7, 9, 155
Hin1II	CATG	2 cut(s)	123, 377
Hin6I	GCGC	3 cut(s)	5, 7, 153
HinP1I	GCGC	3 cut(s)	5, 7, 153
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	2 cut(s)	281, 519
HpaII	CCGG	7 cut(s)	50, 209, 250, 278, 290, 339, 483
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	113, 371
Hpy188I	TCNGA	2 cut(s)	79, 190
Hpy188III	TCNNGA	4 cut(s)	147, 177, 498, 542
Hpy8I	GTNNAC	2 cut(s)	113, 371
HpyAV	CCTTC	2 cut(s)	20, 438
HpyCH4IV	ACGT	3 cut(s)	384, 401, 529
HpyCH4V	TGCA	2 cut(s)	113, 218
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	3 cut(s)	384, 401, 529
Hsp92II	CATG	2 cut(s)	123, 377
HspAI	GCGC	3 cut(s)	5, 7, 153
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	185, 190, 410
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	202, 230
LweI	GCATC	1 cut(s)	140
MabI	ACCWGGT	1 cut(s)	455
MaeII	ACGT	3 cut(s)	384, 401, 529
MaeIII	GTNAC	3 cut(s)	255, 451, 477
MalI	GATC	3 cut(s)	187, 192, 412
MboI	GATC	3 cut(s)	185, 190, 410
MboII	GAAGA	5 cut(s)	7, 14, 95, 411, 545
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	37, 329
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	92, 98, 184, 257
MreI	CGCCGGCG	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	2 cut(s)	134, 323
MslI	CAYNNNNRTG	2 cut(s)	118, 468
MspI	CCGG	7 cut(s)	50, 209, 250, 278, 290, 339, 483
MspR9I	CCNGG	2 cut(s)	457, 483
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	7
NaeI	GCCGGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	185, 190, 410
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	123, 377
NlaIV	GGNNCC	2 cut(s)	161, 502
NspI	RCATGY	1 cut(s)	123
PalAI	GGCGCGCC	1 cut(s)	5
PauI	GCGCGC	1 cut(s)	5
PciI	ACATGT	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	281, 519
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	217, 220, 337, 363
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
Ppu21I	YACGTR	2 cut(s)	385, 402
PpuMI	RGGWCCY	1 cut(s)	500
PscI	ACATGT	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	455
PspCI	CACGTG	1 cut(s)	402
PspEI	GGTNACC	2 cut(s)	451, 477
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	161, 502
PspPI	GGNCC	2 cut(s)	500, 539
PspPPI	RGGWCCY	1 cut(s)	500
PsrI	GAACNNNNNNTAC	2 cut(s)	478, 510
PstI	CTGCAG	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	83
PteI	GCGCGC	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	118, 468
SaqAI	TTAA	2 cut(s)	134, 323
SatI	GCNGC	4 cut(s)	216, 219, 336, 362
Sau3AI	GATC	3 cut(s)	185, 190, 410
Sau96I	GGNCC	2 cut(s)	500, 539
ScrFI	CCNGG	2 cut(s)	457, 483
SduI	GDGCHC	1 cut(s)	115
SexAI	ACCWGGT	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	216
SgrAI	CRCCGGYG	1 cut(s)	289
SgsI	GGCGCGCC	1 cut(s)	5
SinI	GGWCC	2 cut(s)	500, 539
SmiMI	CAYNNNNRTG	2 cut(s)	118, 468
SmlI	CTYRAG	2 cut(s)	175, 490
SmoI	CTYRAG	2 cut(s)	175, 490
Sse9I	AATT	2 cut(s)	37, 329
SsiI	CCGC	9 cut(s)	65, 98, 163, 206, 287, 293, 336, 362, 474
StyD4I	CCNGG	2 cut(s)	455, 481
TaiI	ACGT	3 cut(s)	387, 404, 532
TaqI	TCGA	2 cut(s)	148, 396
TasI	AATT	2 cut(s)	37, 329
TauI	GCSGC	2 cut(s)	338, 364
TfiI	GAWTC	2 cut(s)	281, 519
Tru1I	TTAA	2 cut(s)	134, 323
Tru9I	TTAA	2 cut(s)	134, 323
TscAI	CASTG	2 cut(s)	120, 371
TseI	GCWGC	2 cut(s)	215, 218
TspGWI	ACGGA	2 cut(s)	8, 341
TspRI	CASTG	2 cut(s)	120, 371
Tth111I	GACNNNGTC	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	500, 539
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.