Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033632.1

Orthogroup ID

OG0010997

Physical Location & Seq

Genomic Coordinates Forward (+)

14305 .. 15000

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033632.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgcctcgctcccagagatttctcaccacagcaacctcaacgacgaagtacgccgccgctccgcctcctgaggccgtgaccttggaatccgactttgttgttatcctggcggctcttttatgcgccgtcatatgcgtcgtgggcctgctcgccgtggcgcgctgcgcctggctgcgacgcgcgccaggcgggggccgggccggtgaaccgggctccgcacaggcctcgtctgctaacaaggggctgaaaaagaaggtcctgcagcagctccccaagttcatctacggcgacggcggaccttcggcgccgccgccgaagatggggtcggagtgcgccatatgcctcggcgagttcgcggagggcgacgagatcagggttctgccgcagtgcgggcatgttttccacgtcggatgcatcgacacgtggctcgggtcccactcgtcgtgtccgtcgtgtcggcagatcctggtggtggcgcggtgtcacaagtgcggcaacttccccgccatttctggcgctgagctcaaaattcggcaagatcatatttaccattctgcccctccgccactcgccttggccgccgccgccgccgccgccgctcccgctcattctgcttccgccgccgccacaactactggttgtagcagcagcagtaatagtaatagtaatagtaagagtaatattttcttaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

231

Amino Acids

23.75

Weight (kDa)

8.87

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20823 AT1G76410
fragaria_vesca	FvH4_1g10140
malus_domestica	MD02G1113400.v1.1 MD06G1005400.v1.1 MD15G1228600.v1.1
prunus_persica	Prupe.5G006700_v2.0.a1 Prupe.7G185500_v2.0.a1
pyrus_communis	pycom02g08840
rosa_chinensis	RchiOBHm_Chr2g0096911
rosa_laevigata	RLG00000016682
rosa_multiflora	Rmu_sc0033632.1_g000003 Rmu_ssc0000215.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145160
rosa_rugosa	Rorug02G0061800
rosa_samantha	Rh2AG109800 Rh2BG111700 Rh2CG113800 Rh2DG112900
rosa_wichuraiana	Rw2G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccBSI	CCGCTC	3 cut(s)	59, 599, 605
AccII	CGCG	5 cut(s)	160, 180, 182, 356, 478
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	191, 320, 389, 472
AflIII	ACRYGT	1 cut(s)	420
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	4 cut(s)	105, 167, 184, 465
AluBI	AGCT	2 cut(s)	268, 523
AluI	AGCT	2 cut(s)	268, 523
Alw21I	GWGCWC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	6 cut(s)	72, 142, 193, 198, 222, 576
ApeKI	GCWGC	6 cut(s)	162, 172, 262, 265, 645, 648
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	6 cut(s)	142, 193, 198, 256, 296, 432
AsuC2I	CCSGG	2 cut(s)	197, 210
AsuHPI	GGTGA	2 cut(s)	16, 215
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	3 cut(s)	256, 296, 432
AxyI	CCTNAGG	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	215, 525
BbrPI	CACGTG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	6 cut(s)	149, 159, 274, 277, 657, 660
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	5 cut(s)	59, 110, 137, 301, 307
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	4 cut(s)	107, 169, 186, 467
BcnI	CCSGG	2 cut(s)	197, 210
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	2 cut(s)	308, 519
BlpI	GCTNAGC	1 cut(s)	519
Bme1390I	CCNGG	6 cut(s)	107, 169, 186, 197, 210, 467
Bme18I	GGWCC	3 cut(s)	256, 296, 432
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	6 cut(s)	142, 193, 198, 256, 296, 432
BmiI	GGNNCC	5 cut(s)	194, 214, 306, 433, 434
BmrFI	CCNGG	6 cut(s)	107, 169, 186, 197, 210, 467
BmsI	GCATC	2 cut(s)	401, 423
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuMI	CCSGG	2 cut(s)	197, 210
BsaAI	YACGTR	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	4 cut(s)	81, 153, 343, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 320, 389, 472
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	640
Bse21I	CCTNAGG	1 cut(s)	69
BseBI	CCWGG	4 cut(s)	107, 169, 186, 467
BseDI	CCNNGG	4 cut(s)	81, 153, 343, 573
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	4 cut(s)	191, 320, 389, 472
BseMII	CTCAG	2 cut(s)	60, 510
BseNI	ACTGG	1 cut(s)	640
BsePI	GCGCGC	2 cut(s)	158, 180
BseXI	GCAGC	6 cut(s)	149, 159, 274, 277, 657, 660
Bsh1236I	CGCG	5 cut(s)	160, 180, 182, 356, 478
BshFI	GGCC	6 cut(s)	74, 144, 195, 200, 224, 578
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	3 cut(s)	196, 201, 209
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	4 cut(s)	191, 320, 389, 472
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	6 cut(s)	74, 144, 195, 200, 224, 578
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	215, 525
Bsp143I	GATC	3 cut(s)	369, 462, 538
Bsp1720I	GCTNAGC	1 cut(s)	519
BspANI	GGCC	6 cut(s)	74, 144, 195, 200, 224, 578
BspCNI	CTCAG	2 cut(s)	61, 511
BspFNI	CGCG	5 cut(s)	160, 180, 182, 356, 478
BspLI	GGNNCC	5 cut(s)	194, 214, 306, 433, 434
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	1 cut(s)	457
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	3 cut(s)	59, 599, 605
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	81, 153, 343, 573
BssHII	GCGCGC	2 cut(s)	158, 180
BssMI	GATC	3 cut(s)	369, 462, 538
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	2 cut(s)	81, 573
Bst2UI	CCWGG	4 cut(s)	107, 169, 186, 467
BstACI	GRCGYC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	5 cut(s)	146, 150, 160, 182, 392
BstDEI	CTNAG	2 cut(s)	69, 519
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	5 cut(s)	160, 180, 182, 356, 478
BstH2I	RGCGCY	2 cut(s)	308, 519
BstKTI	GATC	3 cut(s)	372, 465, 541
BstMBI	GATC	3 cut(s)	369, 462, 538
BstNI	CCWGG	4 cut(s)	107, 169, 186, 467
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	6 cut(s)	105, 167, 184, 195, 208, 465
BstSFI	CTRYAG	1 cut(s)	260
BstUI	CGCG	5 cut(s)	160, 180, 182, 356, 478
BstV1I	GCAGC	6 cut(s)	149, 159, 274, 277, 657, 660
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	6 cut(s)	74, 144, 195, 200, 224, 578
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	5 cut(s)	146, 150, 160, 182, 392
CaiI	CAGNNNCTG	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	6 cut(s)	142, 193, 198, 256, 296, 432
CseI	GACGC	2 cut(s)	124, 186
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	69, 519
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	3 cut(s)	371, 464, 540
DpnII	GATC	3 cut(s)	369, 462, 538
EaeI	YGGCCR	1 cut(s)	576
EciI	GGCGGA	4 cut(s)	51, 309, 552, 607
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	81, 573
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	215, 525
Eco47I	GGWCC	3 cut(s)	256, 296, 432
Eco53kI	GAGCTC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	2 cut(s)	256, 432
EcoRII	CCWGG	4 cut(s)	105, 167, 184, 465
EcoT14I	CCWWGG	2 cut(s)	81, 573
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	2 cut(s)	215, 525
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	81, 573
FaeI	CATG	1 cut(s)	398
FaiI	YATR	7 cut(s)	121, 131, 133, 338, 340, 396, 543
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	1 cut(s)	394
FauI	CCCGC	4 cut(s)	182, 383, 511, 610
FauNDI	CATATG	2 cut(s)	131, 338
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	2 cut(s)	215, 525
HaeII	RGCGCY	2 cut(s)	308, 519
HaeIII	GGCC	6 cut(s)	74, 144, 195, 200, 224, 578
HapII	CCGG	3 cut(s)	196, 201, 209
HgaI	GACGC	2 cut(s)	124, 186
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	196, 201, 209
HphI	GGTGA	2 cut(s)	16, 215
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	91, 328, 410
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	8 cut(s)	46, 140, 180, 293, 368, 410, 445, 454
HpyAV	CCTTC	2 cut(s)	247, 309
HpyCH4IV	ACGT	2 cut(s)	405, 422
HpyCH4V	TGCA	2 cut(s)	262, 414
HpyF3I	CTNAG	2 cut(s)	69, 519
HpySE526I	ACGT	2 cut(s)	405, 422
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	398
KasI	GGCGCC	1 cut(s)	304
KflI	GGGWCCC	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	369, 462, 538
LmnI	GCTCC	5 cut(s)	14, 64, 218, 273, 604
Lsp1109I	GCAGC	6 cut(s)	149, 159, 274, 277, 657, 660
LweI	GCATC	2 cut(s)	401, 423
MaeII	ACGT	2 cut(s)	405, 422
MaeIII	GTNAC	2 cut(s)	76, 482
MalI	GATC	3 cut(s)	371, 464, 540
MbiI	CCGCTC	3 cut(s)	59, 599, 605
MboI	GATC	3 cut(s)	369, 462, 538
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	215, 525
MluCI	AATT	1 cut(s)	528
Mly113I	GGCGCC	1 cut(s)	305
MmeI	TCCRAC	3 cut(s)	114, 306, 388
MnlI	CCTC	8 cut(s)	15, 46, 64, 75, 235, 352, 353, 570
Mph1103I	ATGCAT	1 cut(s)	416
MspI	CCGG	3 cut(s)	196, 201, 209
MspR9I	CCNGG	6 cut(s)	107, 169, 186, 197, 210, 467
MteI	GCGCNGCGC	1 cut(s)	163
MvaI	CCWGG	4 cut(s)	107, 169, 186, 467
MvnI	CGCG	5 cut(s)	160, 180, 182, 356, 478
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	197, 210
NdeI	CATATG	2 cut(s)	131, 338
NdeII	GATC	3 cut(s)	369, 462, 538
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	5 cut(s)	194, 214, 306, 433, 434
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	76, 482
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	398
PauI	GCGCGC	2 cut(s)	158, 180
PceI	AGGCCT	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	4 cut(s)	360, 414, 446, 449
PfeI	GAWTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	423
PpuMI	RGGWCCY	2 cut(s)	256, 432
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	2 cut(s)	256, 432
Psp6I	CCWGG	4 cut(s)	105, 167, 184, 465
PspCI	CACGTG	1 cut(s)	423
PspGI	CCWGG	4 cut(s)	105, 167, 184, 465
PspN4I	GGNNCC	5 cut(s)	194, 214, 306, 433, 434
PspPI	GGNCC	6 cut(s)	142, 193, 198, 256, 296, 432
PspPPI	RGGWCCY	2 cut(s)	256, 432
PstI	CTGCAG	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	462
PteI	GCGCGC	2 cut(s)	158, 180
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	369, 462, 538
Sau96I	GGNCC	6 cut(s)	142, 193, 198, 256, 296, 432
ScrFI	CCNGG	6 cut(s)	107, 169, 186, 197, 210, 467
SduI	GDGCHC	2 cut(s)	215, 525
SetI	ASST	8 cut(s)	38, 83, 258, 270, 301, 408, 425, 525
SfaNI	GCATC	2 cut(s)	401, 423
SfcI	CTRYAG	1 cut(s)	260
SfoI	GGCGCC	1 cut(s)	306
SinI	GGWCC	3 cut(s)	256, 296, 432
Sse9I	AATT	1 cut(s)	528
SseBI	AGGCCT	1 cut(s)	224
SspDI	GGCGCC	1 cut(s)	304
SspI	AATATT	1 cut(s)	682
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	6 cut(s)	105, 167, 184, 195, 208, 465
StyI	CCWWGG	2 cut(s)	81, 573
TaiI	ACGT	2 cut(s)	408, 425
TaqI	TCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	2 cut(s)	76, 482
TseI	GCWGC	6 cut(s)	162, 172, 262, 265, 645, 648
Tsp45I	GTSAC	2 cut(s)	76, 482
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	256, 296, 432
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.