Rh2DG112900

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010997
Physical Location & Seq
Reverse (-)
9303515 .. 9304860
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG112900.1

Sequence Viewer

Length: 675 bp
ATGCCTCGCTCCCAGAGATTTCTCACCACAGCAACCTCAACGACGAAGTACGCCGCCGCTCCGCCTCCTGAGGCCGTGACCTTGGAATCCGACTTTGTTGTTATCCTGGCGGCTCTTTTATGCGCAGTCATATGCGTCGTGGGCCTGCTCGCCGTGGCGCGCTGCGCCTGGCTGCGACGCGCGCCAGGCGGGGGCCGGGCCGGTGAACCGGGCTCCGCACAGGCCTCTTCTGCCAACAAGGGGCTGAAAAAGAAGGTCCTGCAGCAGCTCCCCAAGTTCATCTACGGCGACGGCGGACCGTCGGCGCCGCCGCCGAAGATGGGGTCGGAGTGCGCCATATGCCTCGGCGAGTTCGCGGAGGGCGACGAGATCAGGGTTCTGCCGCACTGCGGGCATGTTTTCCACGTCGGATGCATCGACACGTGGCTCGGGTCCCACTCGTCGTGTCCGTCGTGTCGGCAGATCCTGGTGGTGGCGCGGTGTCACAAGTGCGGCAACTTCCCCGCCATTTCTGACGCCGAGCTCAAAATTCGGCAAGATCATATTTACCATTCTGCCCCTCCGCCACTCGCCTTGGCCGCCGCCGCCGCTCATTCTGCTTCCGCCGCCGCCACAACAACTAGTTGTAGCAGCAGCAGTAATAGTAATAGTAAGAGTAATATTTTCTTACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

224

Amino Acids

23.26

Weight (kDa)

8.75

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 110 - 153 1.3e-15 Ring finger domain
zf-RING_11 PF17123 110 - 139 4.2e-12 RING-like zinc finger
zf-C3HC4_2 PF13923 110 - 152 1.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 110 - 154 5.4e-06 zinc-RING finger domain
zf-C3HC4 PF00097 111 - 152 1.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 111 - 150 1.6e-06 RING-type zinc-finger
zf-rbx1 PF12678 119 - 153 8.2e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 2 cut(s) 59, 590
AccII CGCG 5 cut(s) 160, 180, 182, 356, 478
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 1 cut(s) 528
AcvI CACGTG 1 cut(s) 423
AcyI GRCGYC 2 cut(s) 305, 516
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
AflIII ACRYGT 1 cut(s) 420
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 4 cut(s) 105, 167, 184, 465
AluBI AGCT 2 cut(s) 268, 523
AluI AGCT 2 cut(s) 268, 523
Alw21I GWGCWC 1 cut(s) 525
AlwI GGATC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 466
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 6 cut(s) 72, 142, 193, 198, 222, 576
ApeKI GCWGC 6 cut(s) 162, 172, 262, 265, 630, 633
ApoI RAATTY 1 cut(s) 528
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
AspS9I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
AsuC2I CCSGG 2 cut(s) 197, 210
AsuHPI GGTGA 2 cut(s) 16, 215
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 3 cut(s) 256, 296, 432
AxyI CCTNAGG 1 cut(s) 69
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 2 cut(s) 215, 525
BbrPI CACGTG 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 6 cut(s) 149, 159, 274, 277, 642, 645
BccI CCATC 1 cut(s) 313
BceAI ACGGC 4 cut(s) 59, 137, 301, 307
BciT130I CCWGG 4 cut(s) 107, 169, 186, 467
BcnI CCSGG 2 cut(s) 197, 210
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 308
Bme1390I CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
Bme18I GGWCC 3 cut(s) 256, 296, 432
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
BmiI GGNNCC 5 cut(s) 194, 214, 306, 433, 434
BmrFI CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
BmsI GCATC 2 cut(s) 401, 423
BpuMI CCSGG 2 cut(s) 197, 210
BsaAI YACGTR 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 305, 516
BsaJI CCNNGG 4 cut(s) 81, 153, 343, 573
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
Bse118I RCCGGY 1 cut(s) 200
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 4 cut(s) 107, 169, 186, 467
BseDI CCNNGG 4 cut(s) 81, 153, 343, 573
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
BseMII CTCAG 1 cut(s) 60
BsePI GCGCGC 2 cut(s) 158, 180
BseXI GCAGC 6 cut(s) 149, 159, 274, 277, 642, 645
Bsh1236I CGCG 5 cut(s) 160, 180, 182, 356, 478
BshFI GGCC 6 cut(s) 74, 144, 195, 200, 224, 578
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 196, 201, 209
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 6 cut(s) 74, 144, 195, 200, 224, 578
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 215, 525
Bsp143I GATC 3 cut(s) 369, 462, 538
BspANI GGCC 6 cut(s) 74, 144, 195, 200, 224, 578
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 5 cut(s) 160, 180, 182, 356, 478
BspLI GGNNCC 5 cut(s) 194, 214, 306, 433, 434
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 2 cut(s) 59, 590
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 81, 153, 343, 573
BssHII GCGCGC 2 cut(s) 158, 180
BssMI GATC 3 cut(s) 369, 462, 538
BssNI GRCGYC 2 cut(s) 305, 516
BssT1I CCWWGG 2 cut(s) 81, 573
Bst2UI CCWGG 4 cut(s) 107, 169, 186, 467
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 2 cut(s) 305, 516
BstBAI YACGTR 1 cut(s) 423
BstC8I GCNNGC 5 cut(s) 146, 150, 160, 182, 392
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 5 cut(s) 160, 180, 182, 356, 478
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
BstKTI GATC 3 cut(s) 372, 465, 541
BstMBI GATC 3 cut(s) 369, 462, 538
BstNI CCWGG 4 cut(s) 107, 169, 186, 467
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 6 cut(s) 105, 167, 184, 195, 208, 465
BstSFI CTRYAG 1 cut(s) 260
BstUI CGCG 5 cut(s) 160, 180, 182, 356, 478
BstV1I GCAGC 6 cut(s) 149, 159, 274, 277, 642, 645
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 6 cut(s) 74, 144, 195, 200, 224, 578
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 5 cut(s) 146, 150, 160, 182, 392
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
CpoI CGGWCCG 1 cut(s) 296
CseI GACGC 3 cut(s) 124, 186, 524
Csp6I GTAC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CspI CGGWCCG 1 cut(s) 296
CviAII CATG 1 cut(s) 395
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 69
DinI GGCGCC 1 cut(s) 306
DpnI GATC 3 cut(s) 371, 464, 540
DpnII GATC 3 cut(s) 369, 462, 538
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 4 cut(s) 51, 309, 552, 592
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 81, 573
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 2 cut(s) 215, 525
Eco47I GGWCC 3 cut(s) 256, 296, 432
Eco53kI GAGCTC 1 cut(s) 523
Eco72I CACGTG 1 cut(s) 423
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 2 cut(s) 256, 432
EcoRII CCWGG 4 cut(s) 105, 167, 184, 465
EcoT14I CCWWGG 2 cut(s) 81, 573
EcoT22I ATGCAT 1 cut(s) 416
EcoT38I GRGCYC 2 cut(s) 215, 525
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 81, 573
FaeI CATG 1 cut(s) 398
FaiI YATR 7 cut(s) 121, 131, 133, 338, 340, 396, 543
FaqI GGGAC 1 cut(s) 418
FatI CATG 1 cut(s) 394
FauI CCCGC 3 cut(s) 182, 383, 511
FauNDI CATATG 2 cut(s) 131, 338
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 2 cut(s) 215, 525
FspBI CTAG 1 cut(s) 621
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 9 cut(s) 124, 159, 161, 166, 181, 183, 306, 334, 477
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 6 cut(s) 74, 144, 195, 200, 224, 578
HapII CCGG 3 cut(s) 196, 201, 209
HgaI GACGC 3 cut(s) 124, 186, 524
HhaI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
Hin1I GRCGYC 2 cut(s) 305, 516
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
HinP1I GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 196, 201, 209
HphI GGTGA 2 cut(s) 16, 215
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 91, 328, 410, 514
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 9 cut(s) 46, 140, 180, 293, 304, 368, 410, 445, 454
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 2 cut(s) 405, 422
HpyCH4V TGCA 2 cut(s) 262, 414
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 405, 422
Hsp92I GRCGYC 2 cut(s) 305, 516
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
KasI GGCGCC 1 cut(s) 304
KflI GGGWCCC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 369, 462, 538
LmnI GCTCC 4 cut(s) 14, 64, 218, 273
Lsp1109I GCAGC 6 cut(s) 149, 159, 274, 277, 642, 645
LweI GCATC 2 cut(s) 401, 423
MaeI CTAG 1 cut(s) 621
MaeII ACGT 2 cut(s) 405, 422
MaeIII GTNAC 2 cut(s) 76, 482
MalI GATC 3 cut(s) 371, 464, 540
MbiI CCGCTC 2 cut(s) 59, 590
MboI GATC 3 cut(s) 369, 462, 538
MboII GAAGA 2 cut(s) 219, 328
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 2 cut(s) 215, 525
MluCI AATT 1 cut(s) 528
Mly113I GGCGCC 1 cut(s) 305
MmeI TCCRAC 3 cut(s) 114, 306, 388
MnlI CCTC 8 cut(s) 15, 46, 64, 75, 235, 352, 353, 570
Mph1103I ATGCAT 1 cut(s) 416
MspI CCGG 3 cut(s) 196, 201, 209
MspR9I CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
MteI GCGCNGCGC 1 cut(s) 163
MvaI CCWGG 4 cut(s) 107, 169, 186, 467
MvnI CGCG 5 cut(s) 160, 180, 182, 356, 478
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 197, 210
NdeI CATATG 2 cut(s) 131, 338
NdeII GATC 3 cut(s) 369, 462, 538
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 5 cut(s) 194, 214, 306, 433, 434
NmeAIII GCCGAG 2 cut(s) 324, 544
NmuCI GTSAC 2 cut(s) 76, 482
NsbI TGCGCA 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 398
PauI GCGCGC 2 cut(s) 158, 180
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 4 cut(s) 360, 414, 446, 449
PfeI GAWTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 308
PmaCI CACGTG 1 cut(s) 423
PmlI CACGTG 1 cut(s) 423
Ppu21I YACGTR 1 cut(s) 423
PpuMI RGGWCCY 2 cut(s) 256, 432
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 2 cut(s) 256, 432
Psp6I CCWGG 4 cut(s) 105, 167, 184, 465
PspCI CACGTG 1 cut(s) 423
PspGI CCWGG 4 cut(s) 105, 167, 184, 465
PspN4I GGNNCC 5 cut(s) 194, 214, 306, 433, 434
PspPI GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
PspPPI RGGWCCY 2 cut(s) 256, 432
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 462
PteI GCGCGC 2 cut(s) 158, 180
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Rsr2I CGGWCCG 1 cut(s) 296
RsrII CGGWCCG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 369, 462, 538
Sau96I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
ScrFI CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
SduI GDGCHC 2 cut(s) 215, 525
SetI ASST 7 cut(s) 38, 83, 258, 270, 408, 425, 525
SfaNI GCATC 2 cut(s) 401, 423
SfcI CTRYAG 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 306
SinI GGWCC 3 cut(s) 256, 296, 432
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 1 cut(s) 528
SseBI AGGCCT 1 cut(s) 224
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 1 cut(s) 661
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 6 cut(s) 105, 167, 184, 195, 208, 465
StyI CCWWGG 2 cut(s) 81, 573
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 2 cut(s) 408, 425
TaqI TCGA 1 cut(s) 417
TasI AATT 1 cut(s) 528
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 2 cut(s) 76, 482
TseI GCWGC 6 cut(s) 162, 172, 262, 265, 630, 633
Tsp45I GTSAC 2 cut(s) 76, 482
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 256, 296, 432
XapI RAATTY 1 cut(s) 528
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.