Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010997

Physical Location & Seq

Genomic Coordinates Forward (+)

17983590 .. 17985328

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCTCGCTCTCAGAGATTTCTAGGCAGTAGCGCCGCCACCAACTCGTCAACTTTCCCTGCGGCGCCGCCTCCTGAGGCCGTGGTTCTGGAGTCAGACTTCGTCGTCATACTTGCGGCTTTGCTTTGCGCCGTCATATGCGTGATCGGTCTCCTAGCCGTGGCGCGCTGCGCCTGGCTCCGGCGCGGCTCCGGAGCCGGCGGAGCCAGCCTCAGCTCGGCTCAAGCCTCCGCCAACAAAGGCGTCAAGAAGAAGGTACTCCAGTCGCTCCCCAAGTTCACATACGGCATCGGCGGCGCCGAGCCGCCGCCCAAGCTGGCTTCGGAGTGCGCCATCTGCTTGGGGGAGTTCGCGGAGGGAGATGAGATCAGGGTTTTGCCGCAGTGCGGCCACGTCTTCCACGTTGGATGCGTGGACATGTGGCTTGGGTCCCACTCGTCGTGCCCGTCGTGCCGGCAGATCCTGGTGGTGGCTCGCTGCCAGAAGTGCGGCCAGTTCCCGGCTCCCATTTCTGAAGCCGAGCTCAAGGCGCGCCAAGACCATAGCAGCAGCAACAGTCCGGCTCCTCCTCCTCCTCCTCCTCCTCCTGCAGCCAATGCAATTAGTTCTTCTTCTAATACAACAACTACCACTGCTGTTAATAGTAATAGTTATCTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

221

Amino Acids

22.67

Weight (kDa)

8.52

Isoelectric Point (pI)

64.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20823 AT1G76410
fragaria_vesca	FvH4_1g10140
malus_domestica	MD02G1113400.v1.1 MD06G1005400.v1.1 MD15G1228600.v1.1
prunus_persica	Prupe.5G006700_v2.0.a1 Prupe.7G185500_v2.0.a1
pyrus_communis	pycom02g08840
rosa_chinensis	RchiOBHm_Chr2g0096911
rosa_laevigata	RLG00000016682
rosa_multiflora	Rmu_sc0033632.1_g000003 Rmu_ssc0000215.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145160
rosa_rugosa	Rorug02G0061800
rosa_samantha	Rh2AG109800 Rh2BG111700 Rh2CG113800 Rh2DG112900
rosa_wichuraiana	Rw2G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	64, 296
AccII	CGCG	4 cut(s)	166, 186, 353, 532
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	2 cut(s)	388, 490
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	3 cut(s)	65, 243, 297
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	6 cut(s)	160, 180, 217, 386, 469, 499
AflIII	ACRYGT	1 cut(s)	417
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	173, 462
AluBI	AGCT	3 cut(s)	216, 316, 523
AluI	AGCT	3 cut(s)	216, 316, 523
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	78, 388, 490
ApeKI	GCWGC	5 cut(s)	168, 477, 546, 549, 590
AscI	GGCGCGCC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanI	GGYRCC	2 cut(s)	64, 296
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	525
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	155, 464, 558, 561, 602
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	4 cut(s)	65, 116, 143, 301
BciT130I	CCWGG	2 cut(s)	175, 464
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	23, 155
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	3 cut(s)	36, 68, 300
Bme1390I	CCNGG	3 cut(s)	175, 464, 500
Bme18I	GGWCC	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	429
BmrFI	CCNGG	3 cut(s)	175, 464, 500
BmsI	GCATC	2 cut(s)	297, 398
BpiI	GAAGAC	1 cut(s)	388
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	2 cut(s)	110, 245
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	207, 509
BpuMI	CCSGG	1 cut(s)	500
BsaHI	GRCGYC	3 cut(s)	65, 243, 297
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	81, 159
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	6 cut(s)	160, 180, 217, 386, 469, 499
Bse118I	RCCGGY	2 cut(s)	197, 453
Bse1I	ACTGG	2 cut(s)	262, 493
Bse21I	CCTNAGG	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	175, 464
BseDI	CCNNGG	2 cut(s)	81, 159
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	6 cut(s)	160, 180, 217, 386, 469, 499
BseMII	CTCAG	3 cut(s)	26, 66, 226
BseNI	ACTGG	2 cut(s)	262, 493
BsePI	GCGCGC	2 cut(s)	164, 530
BseRI	GAGGAG	7 cut(s)	555, 558, 561, 564, 567, 570, 573
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	5 cut(s)	155, 464, 558, 561, 602
Bsh1236I	CGCG	4 cut(s)	166, 186, 353, 532
BshFI	GGCC	3 cut(s)	80, 390, 492
BshNI	GGYRCC	2 cut(s)	64, 296
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	6 cut(s)	181, 192, 198, 454, 500, 560
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	6 cut(s)	160, 180, 217, 386, 469, 499
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	80, 390, 492
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	446, 525
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	144, 366, 459
BspANI	GGCC	3 cut(s)	80, 390, 492
BspCNI	CTCAG	3 cut(s)	25, 67, 225
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	4 cut(s)	166, 186, 353, 532
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	454
BspT107I	GGYRCC	2 cut(s)	64, 296
BspTNI	GGTCTC	1 cut(s)	155
BsrFI	RCCGGY	2 cut(s)	197, 453
BsrI	ACTGG	2 cut(s)	262, 493
BssAI	RCCGGY	2 cut(s)	197, 453
BssECI	CCNNGG	2 cut(s)	81, 159
BssHII	GCGCGC	2 cut(s)	164, 530
BssMI	GATC	3 cut(s)	144, 366, 459
BssNI	GRCGYC	3 cut(s)	65, 243, 297
Bst2UI	CCWGG	2 cut(s)	175, 464
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	3 cut(s)	65, 243, 297
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	7 cut(s)	166, 199, 208, 318, 455, 475, 532
BstDEI	CTNAG	3 cut(s)	12, 75, 212
BstDSI	CCRYGG	2 cut(s)	81, 159
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	4 cut(s)	166, 186, 353, 532
BstH2I	RGCGCY	3 cut(s)	36, 68, 300
BstKTI	GATC	3 cut(s)	147, 369, 462
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	144, 366, 459
BstNI	CCWGG	2 cut(s)	175, 464
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	173, 462, 498
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	4 cut(s)	166, 186, 353, 532
BstV1I	GCAGC	5 cut(s)	155, 464, 558, 561, 602
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	80, 390, 492
BtgI	CCRYGG	2 cut(s)	81, 159
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	413
BtsI	GCAGTG	2 cut(s)	389, 630
BtsIMutI	CAGTG	2 cut(s)	389, 630
Cac8I	GCNNGC	7 cut(s)	166, 199, 208, 318, 455, 475, 532
CaiI	CAGNNNCTG	1 cut(s)	463
Cfr10I	RCCGGY	2 cut(s)	197, 453
Cfr13I	GGNCC	1 cut(s)	429
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	12, 75, 212
DinI	GGCGCC	2 cut(s)	66, 298
DpnI	GATC	3 cut(s)	146, 368, 461
DpnII	GATC	3 cut(s)	144, 366, 459
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	388, 490
EciI	GGCGGA	2 cut(s)	216, 220
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	173, 462
EcoT38I	GRGCYC	1 cut(s)	525
EgeI	GGCGCC	2 cut(s)	66, 298
EheI	GGCGCC	2 cut(s)	66, 298
FaeI	CATG	1 cut(s)	421
FaiI	YATR	6 cut(s)	110, 137, 139, 283, 419, 543
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	417
FauNDI	CATATG	1 cut(s)	137
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	2 cut(s)	23, 155
GsuI	CTGGAG	2 cut(s)	110, 245
HaeII	RGCGCY	3 cut(s)	36, 68, 300
HaeIII	GGCC	3 cut(s)	80, 390, 492
HapII	CCGG	6 cut(s)	181, 192, 198, 454, 500, 560
HgaI	GACGC	1 cut(s)	232
Hin1I	GRCGYC	3 cut(s)	65, 243, 297
Hin1II	CATG	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	6 cut(s)	181, 192, 198, 454, 500, 560
Hpy166II	GTNNAC	3 cut(s)	51, 279, 415
Hpy188I	TCNGA	4 cut(s)	15, 97, 325, 514
Hpy188III	TCNNGA	4 cut(s)	74, 89, 192, 247
Hpy8I	GTNNAC	3 cut(s)	51, 279, 415
Hpy99I	CGWCG	3 cut(s)	107, 442, 451
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	393, 402
HpyCH4V	TGCA	2 cut(s)	590, 599
HpyF3I	CTNAG	3 cut(s)	12, 75, 212
HpySE526I	ACGT	2 cut(s)	393, 402
Hsp92I	GRCGYC	3 cut(s)	65, 243, 297
Hsp92II	CATG	1 cut(s)	421
KasI	GGCGCC	2 cut(s)	64, 296
KflI	GGGWCCC	1 cut(s)	429
Kpn2I	TCCGGA	1 cut(s)	191
KroI	GCCGGC	2 cut(s)	197, 453
KroNI	GCCGGC	2 cut(s)	199, 455
Kzo9I	GATC	3 cut(s)	144, 366, 459
LmnI	GCTCC	7 cut(s)	183, 194, 194, 203, 273, 508, 568
Lsp1109I	GCAGC	5 cut(s)	155, 464, 558, 561, 602
LweI	GCATC	2 cut(s)	297, 398
MaeI	CTAG	2 cut(s)	23, 155
MaeII	ACGT	2 cut(s)	393, 402
MalI	GATC	3 cut(s)	146, 368, 461
MboI	GATC	3 cut(s)	144, 366, 459
MboII	GAAGA	4 cut(s)	262, 388, 600, 603
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	446, 525
MluCI	AATT	1 cut(s)	600
Mly113I	GGCGCC	2 cut(s)	65, 297
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	385
MroI	TCCGGA	1 cut(s)	191
MroNI	GCCGGC	2 cut(s)	197, 453
MseI	TTAA	2 cut(s)	639, 661
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	6 cut(s)	181, 192, 198, 454, 500, 560
MspR9I	CCNGG	3 cut(s)	175, 464, 500
MteI	GCGCNGCGC	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	175, 464
MvnI	CGCG	4 cut(s)	166, 186, 353, 532
NaeI	GCCGGC	2 cut(s)	199, 455
NarI	GGCGCC	2 cut(s)	65, 297
NciI	CCSGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	3 cut(s)	144, 366, 459
NgoMIV	GCCGGC	2 cut(s)	197, 453
NlaIII	CATG	1 cut(s)	421
NmeAIII	GCCGAG	3 cut(s)	197, 325, 544
NspI	RCATGY	1 cut(s)	421
PalAI	GGCGCGCC	1 cut(s)	530
PauI	GCGCGC	2 cut(s)	164, 530
PciI	ACATGT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	5 cut(s)	297, 399, 408, 443, 446
PdiI	GCCGGC	2 cut(s)	199, 455
PflFI	GACNNNGTC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	2 cut(s)	68, 300
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	429
PscI	ACATGT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	173, 462
PspGI	CCWGG	2 cut(s)	173, 462
PspPI	GGNCC	1 cut(s)	429
PspPPI	RGGWCCY	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	101
PteI	GCGCGC	2 cut(s)	164, 530
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	639, 661
Sau3AI	GATC	3 cut(s)	144, 366, 459
Sau96I	GGNCC	1 cut(s)	429
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	175, 464, 500
SduI	GDGCHC	2 cut(s)	446, 525
SetI	ASST	6 cut(s)	218, 258, 318, 396, 405, 525
SfaNI	GCATC	2 cut(s)	297, 398
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	2 cut(s)	66, 298
SgsI	GGCGCGCC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	222, 524
SmoI	CTYRAG	2 cut(s)	222, 524
Sse9I	AATT	1 cut(s)	600
SspDI	GGCGCC	2 cut(s)	64, 296
SspMI	CTAG	2 cut(s)	23, 155
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	3 cut(s)	173, 462, 498
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	396, 405
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	600
Tru1I	TTAA	2 cut(s)	639, 661
Tru9I	TTAA	2 cut(s)	639, 661
TscAI	CASTG	2 cut(s)	389, 637
TseI	GCWGC	5 cut(s)	168, 477, 546, 549, 590
TspRI	CASTG	2 cut(s)	389, 637
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	429
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	2 cut(s)	23, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.