Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Reverse (-)

7292389 .. 7294746

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGACAACAATGGAGTTAAACCCGCTGTTTCCGCCATGGAAGCCTTTGAAAAGCTTGAGAAAGTAGGTGAAGGGACTTATGGGAAAGTTTACAGAGCAAGAGAGAAAGCTACTGGGATGATCGTTGCTTTGAAGAAGACGCGTCTCCATGAGGATGAAGAAGGTGTTCCTCCCACTACTCTTCGCGAGATCTCTATCTTGCGTATGCTCGCTCGTGATCCTCACATCGTTAGGTTGATGGATGTTAAGCAAGGAATAAACAAAGAAGGAAAAACTGTACTTTACCTTGTTTTCGAGTATGTTGATACTGATCTCAAGAAATTCATCAGAAGCTTTCGTCAAGCTGGACAGAACATTCCACAAAATACTGTCAAGTGCTTGATGTACCAGTTATGCAAAGGCATGGCTTTTTGCCATGGTCATGGAGTGTTGCACAGGGATCTTAAGCCTCACAATCTCTTGATGGACCGGAAGACAATGACGCTCAAAATAGCAGATCTTGGATTAGCCAGAGCCTTCACTCTCCCAATGAAAAAGTATACACATGAGATTCTAACTCTATGGTATAGAGCTCCGGAAGTTCTTCTTGGAGCAACCCATTACTCTACTGGAGTGGATATGTGGTCTGTTGGCTGTATTTTTGCTGAACTAGTGACCAAGCAAGCAATCTTTGCGGGAGACTCTGAGCTCCAACAGCTCCTCCGTATATTCAGGTTGTTGGGAACACCAAACGAAGAAGTTTGGCCTGGAGTAAGCAAACTCAAGGACTGGCATGAATACCCGCAATGGAAACCGTTGAGTCTCTCCACAGCTGTGCCAAACCTCGACGAGGCTGGACTTGATCTCTTATCTAAAATGCTGGAGTACGAGCCAGCAAAACGAATCTCAGCAAAGAAAGCTATGGAGCATCCTTACTTCGATGATTTGCCTGACAAGTCCTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

315

Amino Acids

35.85

Weight (kDa)

8.82

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 306	2.9e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 222	1.3e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	2 cut(s)	142, 186
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	4 cut(s)	24, 33, 674, 782
AclWI	GGATC	2 cut(s)	212, 447
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	3 cut(s)	279, 386, 866
AfiI	CCNNNNNNNGG	1 cut(s)	829
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	50, 133
AhlI	ACTAGT	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AleI	CACNNNNGTG	1 cut(s)	812
AluBI	AGCT	9 cut(s)	55, 110, 333, 344, 572, 688, 697, 812, 899
AluI	AGCT	9 cut(s)	55, 110, 333, 344, 572, 688, 697, 812, 899
Alw21I	GWGCWC	2 cut(s)	574, 690
Alw26I	GTCTC	3 cut(s)	149, 672, 806
AlwI	GGATC	2 cut(s)	212, 447
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	2 cut(s)	165, 582
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	574, 690
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	143, 479
Bbv12I	GWGCWC	2 cut(s)	574, 690
BccI	CCATC	2 cut(s)	232, 457
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	149, 672, 806
BcuI	ACTAGT	1 cut(s)	649
BfaI	CTAG	1 cut(s)	650
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	2 cut(s)	189, 496
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	916
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	143, 479
BpmI	CTGGAG	3 cut(s)	630, 768, 881
BpuEI	CTTGAG	3 cut(s)	77, 299, 746
BsaBI	GATNNNNATC	2 cut(s)	194, 309
BsaJI	CCNNGG	2 cut(s)	36, 415
BsaWI	WCCGGW	2 cut(s)	468, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	4 cut(s)	118, 388, 613, 773
Bse3DI	GCAATG	1 cut(s)	791
Bse8I	GATNNNNATC	2 cut(s)	194, 309
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	36, 415
BseGI	GGATG	4 cut(s)	123, 160, 247, 907
BseJI	GATNNNNATC	2 cut(s)	194, 309
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	1 cut(s)	791
BseMII	CTCAG	2 cut(s)	675, 900
BseNI	ACTGG	4 cut(s)	118, 388, 613, 773
BseRI	GAGGAG	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	142, 186
BshFI	GGCC	1 cut(s)	745
BsiHKAI	GWGCWC	2 cut(s)	574, 690
BsiSI	CCGG	2 cut(s)	469, 575
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	3 cut(s)	149, 672, 806
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	574, 690
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
Bsp19I	CCATGG	2 cut(s)	36, 415
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	4 cut(s)	24, 33, 674, 782
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	676, 899
BspEI	TCCGGA	1 cut(s)	574
BspFNI	CGCG	2 cut(s)	142, 186
BspPI	GGATC	2 cut(s)	212, 447
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	791
BsrI	ACTGG	4 cut(s)	118, 388, 613, 773
BssECI	CCNNGG	2 cut(s)	36, 415
BssMI	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
BssNAI	GTATAC	1 cut(s)	540
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	36, 415
Bst1107I	GTATAC	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	277, 370, 795
Bst6I	CTCTTC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	3 cut(s)	210, 663, 873
BstDEI	CTNAG	2 cut(s)	684, 886
BstDSI	CCRYGG	2 cut(s)	36, 415
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	123, 160, 247, 907
BstFNI	CGCG	2 cut(s)	142, 186
BstKTI	GATC	7 cut(s)	123, 192, 220, 313, 442, 499, 844
BstMAI	GTCTC	3 cut(s)	149, 672, 806
BstMBI	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 671, 694, 896
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstUI	CGCG	2 cut(s)	142, 186
BstV2I	GAAGAC	2 cut(s)	143, 479
BstX2I	RGATCY	3 cut(s)	189, 439, 496
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	3 cut(s)	189, 439, 496
BstZ17I	GTATAC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	745
BtgI	CCRYGG	2 cut(s)	36, 415
BtsCI	GGATG	4 cut(s)	123, 160, 247, 907
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	210, 663, 873
Cfr13I	GGNCC	1 cut(s)	466
CseI	GACGC	3 cut(s)	131, 148, 490
Csp6I	GTAC	3 cut(s)	278, 385, 865
CviAII	CATG	7 cut(s)	37, 149, 403, 416, 422, 545, 773
CviQI	GTAC	3 cut(s)	278, 385, 865
DdeI	CTNAG	2 cut(s)	684, 886
DpnI	GATC	7 cut(s)	122, 191, 219, 312, 441, 498, 843
DpnII	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	2 cut(s)	572, 688
Eco130I	CCWWGG	2 cut(s)	36, 415
Eco24I	GRGCYC	2 cut(s)	574, 690
Eco47I	GGWCC	1 cut(s)	466
Eco53kI	GAGCTC	2 cut(s)	572, 688
EcoICRI	GAGCTC	2 cut(s)	572, 688
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	36, 415
EcoT38I	GRGCYC	2 cut(s)	574, 690
ErhI	CCWWGG	2 cut(s)	36, 415
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	7 cut(s)	40, 152, 406, 419, 425, 548, 776
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	7 cut(s)	36, 148, 402, 415, 421, 544, 772
FauI	CCCGC	3 cut(s)	31, 667, 789
FblI	GTMKAC	1 cut(s)	539
FokI	GGATG	4 cut(s)	130, 167, 254, 894
FriOI	GRGCYC	2 cut(s)	574, 690
FspBI	CTAG	1 cut(s)	650
GsuI	CTGGAG	3 cut(s)	630, 768, 881
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	2 cut(s)	469, 575
HgaI	GACGC	3 cut(s)	131, 148, 490
Hin1II	CATG	7 cut(s)	40, 152, 406, 419, 425, 548, 776
HindIII	AAGCTT	2 cut(s)	53, 331
HinfI	GANTC	4 cut(s)	550, 680, 799, 882
HpaII	CCGG	2 cut(s)	469, 575
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	91, 540
Hpy188I	TCNGA	3 cut(s)	329, 685, 947
Hpy188III	TCNNGA	5 cut(s)	185, 215, 316, 460, 575
Hpy8I	GTNNAC	2 cut(s)	91, 540
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	4 cut(s)	65, 155, 260, 526
HpyCH4III	ACNGT	3 cut(s)	277, 370, 795
HpyCH4V	TGCA	2 cut(s)	396, 433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 671, 694, 896
HpyF3I	CTNAG	2 cut(s)	684, 886
Hsp92II	CATG	7 cut(s)	40, 152, 406, 419, 425, 548, 776
Kpn2I	TCCGGA	1 cut(s)	574
Kzo9I	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
LmnI	GCTCC	5 cut(s)	577, 590, 693, 702, 904
LweI	GCATC	1 cut(s)	916
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	7 cut(s)	122, 191, 219, 312, 441, 498, 843
MboI	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
MboII	GAAGA	7 cut(s)	145, 148, 170, 173, 484, 575, 746
MflI	RGATCY	3 cut(s)	189, 439, 496
MhlI	GDGCHC	2 cut(s)	574, 690
MluCI	AATT	1 cut(s)	320
MluI	ACGCGT	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	674, 808
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	7 cut(s)	145, 180, 231, 459, 710, 823, 833
MroI	TCCGGA	1 cut(s)	574
MroXI	GAANNNNTTC	2 cut(s)	165, 582
MseI	TTAA	3 cut(s)	18, 246, 444
MslI	CAYNNNNRTG	3 cut(s)	153, 420, 812
MspA1I	CMGCKG	2 cut(s)	26, 812
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	469, 575
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	2 cut(s)	142, 186
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 671, 694, 896
NcoI	CCATGG	2 cut(s)	36, 415
NdeII	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
NlaIII	CATG	7 cut(s)	40, 152, 406, 419, 425, 548, 776
NmuCI	GTSAC	1 cut(s)	652
NruI	TCGCGA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	812
PdmI	GAANNNNTTC	2 cut(s)	165, 582
PfeI	GAWTC	2 cut(s)	550, 882
PleI	GAGTC	2 cut(s)	674, 807
PpsI	GAGTC	2 cut(s)	674, 807
Psp124BI	GAGCTC	2 cut(s)	574, 690
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	466
PsuI	RGATCY	3 cut(s)	189, 439, 496
PvuII	CAGCTG	1 cut(s)	812
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	3 cut(s)	279, 386, 866
RsaNI	GTAC	3 cut(s)	278, 385, 865
RseI	CAYNNNNRTG	3 cut(s)	153, 420, 812
SacI	GAGCTC	2 cut(s)	574, 690
SaqAI	TTAA	3 cut(s)	18, 246, 444
Sau3AI	GATC	7 cut(s)	120, 189, 217, 310, 439, 496, 841
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	2 cut(s)	674, 808
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	2 cut(s)	574, 690
SfaNI	GCATC	1 cut(s)	916
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	3 cut(s)	153, 420, 812
SmlI	CTYRAG	4 cut(s)	56, 314, 443, 761
SmoI	CTYRAG	4 cut(s)	56, 314, 443, 761
SpeI	ACTAGT	1 cut(s)	649
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	4 cut(s)	24, 33, 674, 782
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	2 cut(s)	574, 690
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	2 cut(s)	36, 415
TaaI	ACNGT	3 cut(s)	277, 370, 795
TaqI	TCGA	3 cut(s)	294, 825, 918
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	550, 882
Tru1I	TTAA	3 cut(s)	18, 246, 444
Tru9I	TTAA	3 cut(s)	18, 246, 444
TseFI	GTSAC	1 cut(s)	652
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	4 cut(s)	171, 313, 545, 789
TspGWI	ACGGA	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	2 cut(s)	165, 582
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.