Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

34819643 .. 34821529

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGAAGGCAGGAGCGATCGCAGTGTCGGCTATGGACGCGTTCGAGAAACTGGAGAAGGTCGGAGAAGGGACCTACGGCAAGGTTTACAGAGCCAGAGAGAAGGCCACCGGCAAGATCGTCGCCCTAAAAAAGACTCGCCTCCATGAGGACGAAGAAGGCGTCCCTCCCACCACTCTCCGCGAGGTCTCCATTTTGCGCATGCTCTCCCGCGACCCGCACGTCGTCAGGTTGATGGATGTGAAGCAAGGCACGAATAAGGAAGGCAAGACTGTGCTCTACTTGGTGTTTGAGTACATGGAAACTGATGTCAAGAAATACATTCGCAGTTTCCGTCAAACTGGAGAAATGATTCCTGCTCCCGTCGTTAAGAGTCTGATGTACCAACTATGCAAAGGTGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGGGATCTTAAGCCTCACAATCTCCTGATGGACCGCAAGAGTATGATCCTTAAGATTGCGGATCTTGGACTGGCTCGAGCATTTACTCTGCCCATCAAGAAGTATACGCATGAGCTGAACTTGTCACAAAGCAAGCACTTTTCCCCTGGGGATTCTGAACTTCAGCAGCTCCTACATATATTCAGGTTGGCCAAGATGGCTCCAGCTTTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

215

Amino Acids

24.34

Weight (kDa)

9.61

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 176	5.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 173	3.9e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	3 cut(s)	41, 183, 213
AciI	CCGC	5 cut(s)	181, 211, 218, 466, 491
AclWI	GGATC	3 cut(s)	444, 472, 501
AcoI	YGGCCR	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	296, 383
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflII	CTTAAG	2 cut(s)	440, 482
AflIII	ACRYGT	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	3 cut(s)	547, 601, 638
AluI	AGCT	3 cut(s)	547, 601, 638
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	3 cut(s)	444, 472, 501
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	105, 621
ApeKI	GCWGC	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AsiSI	GCGATCGC	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	72, 463
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	72, 463
BalI	TGGCCA	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	4 cut(s)	229, 454, 533, 622
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	193
BfrI	CTTAAG	2 cut(s)	440, 482
BglI	GCCNNNNNGGC	1 cut(s)	629
BisI	GCNGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	600
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	2 cut(s)	72, 463
BmeT110I	CYCGRG	1 cut(s)	507
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	72, 463
BmiI	GGNNCC	2 cut(s)	73, 633
BmrFI	CCNGG	1 cut(s)	579
BpmI	CTGGAG	3 cut(s)	74, 363, 618
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	412, 577, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	57, 346, 507
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	412, 577, 578
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	3 cut(s)	57, 346, 507
BseXI	GCAGC	1 cut(s)	610
Bsh1236I	CGCG	3 cut(s)	41, 183, 213
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	107, 623
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	85, 149
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	85, 149
BsnI	GGCC	2 cut(s)	107, 623
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	18, 117, 436, 477, 493
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	5 cut(s)	181, 211, 218, 466, 491
BspANI	GGCC	2 cut(s)	107, 623
BspFNI	CGCG	3 cut(s)	41, 183, 213
BspLI	GGNNCC	2 cut(s)	73, 633
BspPI	GGATC	3 cut(s)	444, 472, 501
BspTI	CTTAAG	2 cut(s)	440, 482
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	57, 346, 507
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	412, 577, 578
BssMI	GATC	5 cut(s)	18, 117, 436, 477, 493
BssNAI	GTATAC	1 cut(s)	537
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	2 cut(s)	440, 482
BstC8I	GCNNGC	2 cut(s)	203, 566
BstDSI	CCRYGG	1 cut(s)	412
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	3 cut(s)	41, 183, 213
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	21, 120, 439, 480, 496
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	5 cut(s)	18, 117, 436, 477, 493
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 38, 629
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	577
BstUI	CGCG	3 cut(s)	41, 183, 213
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	2 cut(s)	436, 493
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	2 cut(s)	436, 493
BstZ17I	GTATAC	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	107, 623
BtgI	CCRYGG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	203, 566
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	72, 463
CseI	GACGC	2 cut(s)	47, 151
Csp6I	GTAC	2 cut(s)	295, 382
CviAII	CATG	6 cut(s)	146, 202, 298, 413, 419, 542
CviQI	GTAC	2 cut(s)	295, 382
DpnI	GATC	5 cut(s)	20, 119, 438, 479, 495
DpnII	GATC	5 cut(s)	18, 117, 436, 477, 493
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	72, 463
Eco57I	CTGAAG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	6 cut(s)	149, 205, 301, 416, 422, 545
FaqI	GGGAC	2 cut(s)	85, 149
FatI	CATG	6 cut(s)	145, 201, 297, 412, 418, 541
FauI	CCCGC	2 cut(s)	218, 225
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	599
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	599
GsuI	CTGGAG	3 cut(s)	74, 363, 618
HaeIII	GGCC	2 cut(s)	107, 623
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	47, 151
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	149, 205, 301, 416, 422, 545
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	5 cut(s)	136, 352, 373, 423, 584
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	88, 537
Hpy188I	TCNGA	3 cut(s)	65, 378, 589
Hpy188III	TCNNGA	4 cut(s)	46, 313, 457, 529
Hpy8I	GTNNAC	2 cut(s)	88, 537
Hpy99I	CGWCG	3 cut(s)	125, 227, 368
HpyAV	CCTTC	6 cut(s)	52, 62, 97, 152, 257, 415
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	393, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 38, 629
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	6 cut(s)	149, 205, 301, 416, 422, 545
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	18, 117, 436, 477, 493
LmnI	GCTCC	4 cut(s)	14, 364, 606, 637
Lsp1109I	GCAGC	1 cut(s)	610
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	5 cut(s)	20, 119, 438, 479, 495
MboI	GATC	5 cut(s)	18, 117, 436, 477, 493
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	2 cut(s)	436, 493
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	623
MluI	ACGCGT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	623
MlyI	GAGTC	2 cut(s)	130, 382
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	142, 152, 177, 178, 456
Mox20I	TGGCCA	1 cut(s)	623
MroXI	GAANNNNTTC	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	3 cut(s)	369, 441, 483
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	623
MspCI	CTTAAG	2 cut(s)	440, 482
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	3 cut(s)	41, 183, 213
MwoI	GCNNNNNNNGC	3 cut(s)	29, 38, 629
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	5 cut(s)	18, 117, 436, 477, 493
NlaIII	CATG	6 cut(s)	149, 205, 301, 416, 422, 545
NlaIV	GGNNCC	2 cut(s)	73, 633
NmuCI	GTSAC	1 cut(s)	555
NsbI	TGCGCA	1 cut(s)	200
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	507
PasI	CCCWGGG	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 331
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	352, 423, 584
PkrI	GCNGC	1 cut(s)	600
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	2 cut(s)	130, 381
PpsI	GAGTC	2 cut(s)	130, 381
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	73, 633
PspPI	GGNCC	2 cut(s)	72, 463
PspPPI	RGGWCCY	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	436, 493
PvuI	CGATCG	1 cut(s)	21
RgaI	GCGATCGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	296, 383
RsaNI	GTAC	2 cut(s)	295, 382
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	369, 441, 483
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	5 cut(s)	18, 117, 436, 477, 493
Sau96I	GGNCC	2 cut(s)	72, 463
SchI	GAGTC	2 cut(s)	130, 382
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	279
SfaAI	GCGATCGC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	507
SgfI	GCGATCGC	1 cut(s)	21
SinI	GGWCC	2 cut(s)	72, 463
SlaI	CTCGAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	440, 482, 507
SmoI	CTYRAG	3 cut(s)	440, 482, 507
SphI	GCATGC	1 cut(s)	205
SsiI	CCGC	5 cut(s)	181, 211, 218, 466, 491
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	45, 508
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	3 cut(s)	352, 423, 584
Tru1I	TTAA	3 cut(s)	369, 441, 483
Tru9I	TTAA	3 cut(s)	369, 441, 483
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	30
Vha464I	CTTAAG	2 cut(s)	440, 482
VpaK11BI	GGWCC	2 cut(s)	72, 463
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.