Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

6262349 .. 6263592

Gene Structure 1244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAAGGCAGTGACGATCGCAGTGTCGGCGATGTACGCGTTCGAGAAACTGGAGAAGGTCGGAGAAGGGACCTATGGCAAGGTTTACAGAGCCAGAGAGAAGGCGACTGGCAAGATCGTCGCCCTAAAAACGACTCGCCTCCACGAGGACGAAGAAGGCGTCCCTTCCACCACTCTTCGCGAGGTCTCCATTTTGCTCATGCTCTCCCGAGACCCACACGTCATCAGGTTGATGGATGTGACGCAAGGCATGAATAAGGAAGGCAAGACTGTGCTCTACTTCGTTTTGAAGTTTGATGTACTAACTCTGCAAAGGTGTTGCCTTCTGCCATGGTCATGGAATCTTACACAGATATTGACCCTTTGGTATAGGGCACCAGAAGTCCTTCTGGGACCTACACATTACTCAACTACAGTGGATATTTGGTCTGTTGGCTGCATATTTGCTGAACTTGTCACAAAGCAAGCACTCTTCCCTGGGGATTCTGAACTGCAGCAGCTCCTACATATATTCAGGTTGACCAAGATGTCTCCAGTTTTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

182

Amino Acids

20.67

Weight (kDa)

8.4

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 97	8.1e-14	Protein kinase domain
Pkinase	PF00069	117 - 171	2.1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	221, 529
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	2 cut(s)	41, 183
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	38, 303
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	2 cut(s)	39, 220
AgsI	TTSAA	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	3 cut(s)	193, 207, 537
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	438, 496, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	72, 395
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	72, 395
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	425, 508, 511
BccI	CCATC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	193, 207, 537
BfmI	CTRYAG	2 cut(s)	414, 494
BisI	GCNGC	3 cut(s)	439, 497, 500
BlsI	GCNGC	3 cut(s)	440, 498, 501
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	2 cut(s)	72, 395
BmeT110I	CYCGRG	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	72, 395
BmiI	GGNNCC	3 cut(s)	73, 378, 396
BmrFI	CCNGG	1 cut(s)	480
BpmI	CTGGAG	2 cut(s)	74, 519
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	193, 207
BsaJI	CCNNGG	3 cut(s)	332, 478, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	57, 115, 536
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	332, 478, 479
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	3 cut(s)	57, 115, 536
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	425, 508, 511
Bsh1236I	CGCG	2 cut(s)	41, 183
Bsh1285I	CGRYCG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	85, 149, 408
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	193, 207, 537
BsmFI	GGGAC	3 cut(s)	85, 149, 408
Bso31I	GGTCTC	2 cut(s)	193, 207
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	279, 379
Bsp143I	GATC	2 cut(s)	18, 117
Bsp19I	CCATGG	1 cut(s)	332
Bsp68I	TCGCGA	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	41, 183
BspLI	GGNNCC	3 cut(s)	73, 378, 396
BspMAI	CTGCAG	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	2 cut(s)	193, 207
BsrI	ACTGG	3 cut(s)	57, 115, 536
BssECI	CCNNGG	3 cut(s)	332, 478, 479
BssMI	GATC	2 cut(s)	18, 117
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	274, 418
Bst6I	CTCTTC	2 cut(s)	183, 479
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	332
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	41, 183
BstKTI	GATC	2 cut(s)	21, 120
BstMAI	GTCTC	3 cut(s)	193, 207, 537
BstMBI	GATC	2 cut(s)	18, 117
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 38
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	2 cut(s)	414, 494
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	2 cut(s)	41, 183
BstV1I	GCAGC	3 cut(s)	425, 508, 511
BstXI	CCANNNNNNTGG	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	2 cut(s)	18, 30
BtsIMutI	CAGTG	3 cut(s)	18, 30, 423
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	72, 395
CseI	GACGC	2 cut(s)	151, 253
Csp6I	GTAC	2 cut(s)	37, 302
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviAII	CATG	4 cut(s)	202, 253, 333, 339
CviJI	RGCY	3 cut(s)	95, 438, 502
CviKI_1	RGCY	3 cut(s)	95, 438, 502
CviQI	GTAC	2 cut(s)	37, 302
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	2 cut(s)	20, 119
DpnII	GATC	2 cut(s)	18, 117
DrdI	GACNNNNNNGTC	2 cut(s)	221, 529
DseDI	GACNNNNNNGTC	2 cut(s)	221, 529
Eam1104I	CTCTTC	2 cut(s)	183, 479
EarI	CTCTTC	2 cut(s)	183, 479
Eco130I	CCWWGG	1 cut(s)	332
Eco31I	GGTCTC	2 cut(s)	193, 207
Eco47I	GGWCC	2 cut(s)	72, 395
Eco88I	CYCGRG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	2 cut(s)	72, 395
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	4 cut(s)	205, 256, 336, 342
FaiI	YATR	9 cut(s)	78, 203, 254, 334, 340, 372, 443, 510, 512
FaqI	GGGAC	3 cut(s)	85, 149, 408
FatI	CATG	4 cut(s)	201, 252, 332, 338
Fnu4HI	GCNGC	3 cut(s)	439, 497, 500
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	439, 497, 500
GluI	GCNGC	3 cut(s)	439, 497, 500
GsuI	CTGGAG	2 cut(s)	74, 519
HgaI	GACGC	2 cut(s)	151, 253
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	205, 256, 336, 342
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	3 cut(s)	136, 343, 485
Hpy166II	GTNNAC	2 cut(s)	88, 522
Hpy188I	TCNGA	2 cut(s)	65, 490
Hpy188III	TCNNGA	3 cut(s)	46, 182, 210
Hpy8I	GTNNAC	2 cut(s)	88, 522
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	8 cut(s)	52, 62, 97, 152, 177, 257, 335, 398
HpyCH4III	ACNGT	2 cut(s)	274, 418
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	313, 441, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 38
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	205, 256, 336, 342
Kzo9I	GATC	2 cut(s)	18, 117
LmnI	GCTCC	1 cut(s)	507
LpnPI	CCDG	9 cut(s)	38, 96, 109, 214, 377, 393, 465, 492, 502
Lsp1109I	GCAGC	3 cut(s)	425, 508, 511
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	13, 241, 457
MalI	GATC	2 cut(s)	20, 119
MboI	GATC	2 cut(s)	18, 117
MboII	GAAGA	3 cut(s)	167, 170, 466
MhlI	GDGCHC	2 cut(s)	279, 379
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	142, 152, 178
MroXI	GAANNNNTTC	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	2 cut(s)	41, 183
MwoI	GCNNNNNNNGC	2 cut(s)	29, 38
NcoI	CCATGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	18, 117
NlaIII	CATG	4 cut(s)	205, 256, 336, 342
NlaIV	GGNNCC	3 cut(s)	73, 378, 396
NmuCI	GTSAC	3 cut(s)	13, 241, 457
NruI	TCGCGA	1 cut(s)	183
PasI	CCCWGGG	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	343, 485
PkrI	GCNGC	3 cut(s)	440, 498, 501
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	2 cut(s)	72, 395
Psp5II	RGGWCCY	2 cut(s)	72, 395
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	73, 378, 396
PspPI	GGNCC	2 cut(s)	72, 395
PspPPI	RGGWCCY	2 cut(s)	72, 395
PstI	CTGCAG	1 cut(s)	498
PvuI	CGATCG	1 cut(s)	21
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	2 cut(s)	38, 303
RsaNI	GTAC	2 cut(s)	37, 302
RseI	CAYNNNNRTG	1 cut(s)	337
SatI	GCNGC	3 cut(s)	439, 497, 500
Sau3AI	GATC	2 cut(s)	18, 117
Sau96I	GGNCC	2 cut(s)	72, 395
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	2 cut(s)	279, 379
SfcI	CTRYAG	2 cut(s)	414, 494
SinI	GGWCC	2 cut(s)	72, 395
SmiMI	CAYNNNNRTG	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	274, 418
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	45
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	343, 485
TscAI	CASTG	3 cut(s)	18, 30, 423
TseFI	GTSAC	3 cut(s)	13, 241, 457
TseI	GCWGC	3 cut(s)	438, 496, 499
Tsp45I	GTSAC	3 cut(s)	13, 241, 457
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	18, 30, 423
VpaK11BI	GGWCC	2 cut(s)	72, 395
XagI	CCTNNNNNAGG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.