Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

11976000 .. 11978304

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1064000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGATGATCGGAGAGGCGAATAAAGGAGCGTCGGCGATGGAGGCGTTCGAGAAGCTTGAGAAGGTGGGAGAAGGGACGTACGGGAAGGTGTACAGAGCGAGAGAGAAGGCGACTGGCAAGATCGTCGCCCTCAAGAAGACTCGCCTCCACGAGGACGAGGAAGGCGTCCCTCCTACCACTCTCCGCGAGGTCTCCATTCTCCGCATGCTCTCCCGAGACCCCCACATCGTCAAGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGAAAGACTGTACTCTACTTGGTGTTTGAGTACATGGACACTGATCTCAAGAAATTCATCCGCACCTTCCGTCAATCTGGAGAGCAAATTCCCTCCCCCATCGTTAAAAGCCTGATGTTCCAACTTTGCAAAGGTGTTGCCTTTTGCCATGGTCATGGAATTTTGCACAGGGATCTTAAGCCTCACAATCTCCTGATGGACCGTAAAACTATGATGCTTAAAATTGCAGATCTTGGACTTGCTAGAGCTTTCACTGTGCCACTCAAGAAGTATACTCATGAGATATTGACCCTTTGGTATAGGGCTCCTGAAGTCCTCCTGGGAGCTACACACTACTCAACTGCAGTGGATATTTGGTCTGTTGGCTGTATATTTGCTGAACTTGTCACGAAGCAAGCAATATTCCCTGGGGATTCTGAACTGCAGCAGCTCCTGCATATATTCAGGTTGTTGGGCACTCCAAATGAGGATGTGTGGCCAGGTGTCAGTAAGCTCAAGGACTGGCATGAGTACCCCCAGTGGAGTCCCCAAAGTTTGGCAAAGGCTGTTCCCAATTTGGACGAAATGGGGCTGGATCTGTTGTTGCAAATGTTGCAATACGATCCTGCTAAACGCATTTCAGCAAAGGCAGCTATGGAGCACCGTTACTTTGATGGTTTGAACAAGGATTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

316

Amino Acids

35.84

Weight (kDa)

8.74

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 307	5.3e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 222	3.3e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	187, 205, 331
AclWI	GGATC	3 cut(s)	450, 852, 866
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	3 cut(s)	323, 357, 429
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	5 cut(s)	83, 95, 282, 302, 782
AfiI	CCNNNNNNNGG	2 cut(s)	154, 805
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	931
AjnI	CCWGG	3 cut(s)	588, 676, 748
AluBI	AGCT	6 cut(s)	58, 518, 596, 700, 763, 902
AluI	AGCT	6 cut(s)	58, 518, 596, 700, 763, 902
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	2 cut(s)	199, 213
AlwI	GGATC	3 cut(s)	450, 852, 866
AlwNI	CAGNNNCTG	1 cut(s)	703
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	3 cut(s)	694, 697, 899
ApoI	RAATTY	3 cut(s)	323, 357, 429
AspS9I	GGNCC	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	912
BbvI	GCAGC	3 cut(s)	706, 709, 911
BccI	CCATC	5 cut(s)	34, 235, 377, 460, 917
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	3 cut(s)	590, 678, 750
BcoDI	GTCTC	2 cut(s)	199, 213
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	612, 692
BfrI	CTTAAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	695, 698, 900
BlsI	GCNGC	3 cut(s)	696, 699, 901
Bme1390I	CCNGG	3 cut(s)	590, 678, 750
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	3 cut(s)	590, 678, 750
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	5 cut(s)	80, 119, 302, 518, 749
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	199, 213
BsaJI	CCNNGG	4 cut(s)	418, 589, 676, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 805
Bse1I	ACTGG	3 cut(s)	121, 776, 787
BseBI	CCWGG	3 cut(s)	590, 678, 750
BseDI	CCNNGG	4 cut(s)	418, 589, 676, 677
BseGI	GGATG	3 cut(s)	250, 327, 745
BseLI	CCNNNNNNNGG	2 cut(s)	154, 805
BseNI	ACTGG	3 cut(s)	121, 776, 787
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	706, 709, 911
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	912
BsiHKCI	CYCGRG	1 cut(s)	216
BsiWI	CGTACG	1 cut(s)	81
BslFI	GGGAC	3 cut(s)	91, 155, 780
BslI	CCNNNNNNNGG	2 cut(s)	154, 805
BsmAI	GTCTC	2 cut(s)	199, 213
BsmFI	GGGAC	3 cut(s)	91, 155, 780
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	2 cut(s)	199, 213
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	577, 728, 912
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	3 cut(s)	187, 205, 331
BspANI	GGCC	1 cut(s)	748
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	2 cut(s)	616, 696
BspPI	GGATC	3 cut(s)	450, 852, 866
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	2 cut(s)	199, 213
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	3 cut(s)	121, 776, 787
BssECI	CCNNGG	4 cut(s)	418, 589, 676, 677
BssMI	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
BssNAI	GTATAC	1 cut(s)	543
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	418
Bst1107I	GTATAC	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	590, 678, 750
Bst4CI	ACNGT	4 cut(s)	280, 473, 526, 914
BstACI	GRCGYC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	446
BstAPI	GCANNNNNTGC	2 cut(s)	703, 862
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	209, 666
BstDSI	CCRYGG	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	250, 327, 745
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	7 cut(s)	12, 126, 316, 445, 502, 847, 874
BstMAI	GTCTC	2 cut(s)	199, 213
BstMBI	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 703, 862, 899
BstNI	CCWGG	3 cut(s)	590, 678, 750
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	588, 676, 748
BstSFI	CTRYAG	2 cut(s)	612, 692
BstSLI	GKGCMC	1 cut(s)	728
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	706, 709, 911
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	3 cut(s)	442, 499, 844
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	3 cut(s)	442, 499, 844
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	748
BtgI	CCRYGG	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	250, 327, 745
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	309, 522, 621, 794
Cac8I	GCNNGC	2 cut(s)	209, 666
CaiI	CAGNNNCTG	1 cut(s)	703
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	2 cut(s)	21, 157
Csp6I	GTAC	5 cut(s)	82, 94, 281, 301, 781
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	6 cut(s)	208, 304, 419, 425, 548, 776
CviQI	GTAC	5 cut(s)	82, 94, 281, 301, 781
DpnI	GATC	7 cut(s)	11, 125, 315, 444, 501, 846, 873
DpnII	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
EaeI	YGGCCR	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	2 cut(s)	199, 213
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	216
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	3 cut(s)	588, 676, 748
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	6 cut(s)	211, 307, 422, 428, 551, 779
FaqI	GGGAC	3 cut(s)	91, 155, 780
FatI	CATG	6 cut(s)	207, 303, 418, 424, 547, 775
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	3 cut(s)	695, 698, 900
FokI	GGATG	3 cut(s)	257, 314, 752
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	695, 698, 900
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	3 cut(s)	695, 698, 900
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	748
HgaI	GACGC	2 cut(s)	21, 157
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	211, 307, 422, 428, 551, 779
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	4 cut(s)	142, 683, 793, 938
Hpy166II	GTNNAC	2 cut(s)	94, 543
Hpy188I	TCNGA	3 cut(s)	14, 688, 947
Hpy8I	GTNNAC	2 cut(s)	94, 543
Hpy99I	CGWCG	2 cut(s)	37, 131
HpyAV	CCTTC	7 cut(s)	58, 68, 82, 103, 158, 263, 346
HpyCH4III	ACNGT	4 cut(s)	280, 473, 526, 914
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	8 cut(s)	399, 436, 497, 614, 694, 706, 856, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 703, 862, 899
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	211, 307, 422, 428, 551, 779
Kzo9I	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
LmnI	GCTCC	5 cut(s)	29, 580, 593, 705, 907
Lsp1109I	GCAGC	3 cut(s)	706, 709, 911
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	655, 914
MalI	GATC	7 cut(s)	11, 125, 315, 444, 501, 846, 873
MboI	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	3 cut(s)	442, 499, 844
MhlI	GDGCHC	3 cut(s)	577, 728, 912
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	5 cut(s)	323, 357, 429, 492, 823
MluNI	TGGCCA	1 cut(s)	748
MlyI	GAGTC	2 cut(s)	136, 802
MmeI	TCCRAC	1 cut(s)	415
Mox20I	TGGCCA	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	3 cut(s)	375, 447, 489
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	748
MspCI	CTTAAG	1 cut(s)	446
MspR9I	CCNGG	3 cut(s)	590, 678, 750
MvaI	CCWGG	3 cut(s)	590, 678, 750
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	44, 703, 862, 899
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
NlaIII	CATG	6 cut(s)	211, 307, 422, 428, 551, 779
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	655
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	547
PasI	CCCWGGG	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	683, 938
Pfl23II	CGTACG	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	805
PkrI	GCNGC	3 cut(s)	696, 699, 901
PleI	GAGTC	2 cut(s)	136, 801
PpsI	GAGTC	2 cut(s)	136, 801
Psp6I	CCWGG	3 cut(s)	588, 676, 748
PspGI	CCWGG	3 cut(s)	588, 676, 748
PspLI	CGTACG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	2 cut(s)	616, 696
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	3 cut(s)	442, 499, 844
RsaI	GTAC	5 cut(s)	83, 95, 282, 302, 782
RsaNI	GTAC	5 cut(s)	82, 94, 281, 301, 781
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	375, 447, 489
SatI	GCNGC	3 cut(s)	695, 698, 900
Sau3AI	GATC	7 cut(s)	9, 123, 313, 442, 499, 844, 871
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	2 cut(s)	136, 802
ScrFI	CCNGG	3 cut(s)	590, 678, 750
SduI	GDGCHC	3 cut(s)	577, 728, 912
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	2 cut(s)	612, 692
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	6 cut(s)	59, 134, 317, 446, 533, 764
SmoI	CTYRAG	6 cut(s)	59, 134, 317, 446, 533, 764
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	5 cut(s)	323, 357, 429, 492, 823
SsiI	CCGC	3 cut(s)	187, 205, 331
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	588, 676, 748
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	4 cut(s)	280, 473, 526, 914
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	323, 357, 429, 492, 823
TatI	WGTACW	3 cut(s)	93, 280, 300
TfiI	GAWTC	2 cut(s)	683, 938
Tru1I	TTAA	3 cut(s)	375, 447, 489
Tru9I	TTAA	3 cut(s)	375, 447, 489
TscAI	CASTG	4 cut(s)	316, 529, 621, 794
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	694, 697, 899
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	4 cut(s)	316, 529, 621, 794
Van91I	CCANNNNNTGG	1 cut(s)	805
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	3 cut(s)	323, 357, 429
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.