Rmu_sc0022408.1_g000012
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022408.1
Physical Location & Seq
Forward (+)
18989 .. 20689
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022408.1_g000012.1.cds

Sequence Viewer

Length: 942 bp
atggagaaggcaggagcgatcgcagtgtcggctatggacgcgttcgagaaactggagaaggtcggagaagggacctacggcaaggtttacagagccagagagaaggccaccggcaagatcgtcgccctcaaaaagactcgcctccatgaggacgaagaaggcgtccctcccaccactctccgcgaggtctccattttgcgcatgctctcccgcgacccgcacgtcgtcaggttgatggatgtgaagcaaggcacgaataaggaaggcaagactgtgctctacctggtgtttgagtacatggaaactgatgtcaagaaatacattcgcagtttccgtcaaactggagaaatgattcctgcccccgtcgttaagagtctgatgtaccaactatgcaaaggtgttgccttctgccatggtcatggaatcttacacagggatcttaagcctcacaatctcctgatggaccgcaagagtatgatccttaagattgcggatcttggactggctcgagcatttactctgcccatcaagaagtacacgcatgagatattgaccctttggtatagggcacctgaagtccttctgggatccacacattactcaactgcagtggatatttggtctgttggctgcatatttgctgaacttgtcactaagcaagcactcttccctggggattctgaactgcagcagctcctacatatattcaggttgttgggtactccaaatgaaacagtgtggccaggtgtaagcaaactcatgaactggcatgagtacccccagtggagccctcagagtttgtccaaggctgttccaaatttggatactgatgggttgcatctgttgtcggaaatgttgcaatatgagcctggaaaacgcatttcagcaaagaaggctatggaacacccttactttgatgatttgaacaaagctggcctctga

Protein Analysis

313

Amino Acids

35.49

Weight (kDa)

9.0

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc16I TGCGCA 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 568
AccII CGCG 3 cut(s) 41, 183, 213
AciI CCGC 5 cut(s) 181, 211, 218, 466, 491
AclWI GGATC 5 cut(s) 444, 472, 501, 582, 595
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 5 cut(s) 296, 383, 536, 721, 776
AfiI CCNNNNNNNGG 1 cut(s) 148
AflII CTTAAG 2 cut(s) 440, 482
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 1 cut(s) 925
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 4 cut(s) 282, 670, 742, 868
AluBI AGCT 2 cut(s) 694, 932
AluI AGCT 2 cut(s) 694, 932
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 5 cut(s) 444, 472, 501, 582, 595
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 3 cut(s) 105, 740, 934
ApeKI GCWGC 3 cut(s) 630, 688, 691
ApoI RAATTY 1 cut(s) 817
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AsiSI GCGATCGC 1 cut(s) 21
Asp700I GAANNNNTTC 2 cut(s) 351, 579
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 72, 463
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 2 cut(s) 72, 463
BaeGI GKGCMC 1 cut(s) 571
BalI TGGCCA 1 cut(s) 742
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 617, 700, 703
BccI CCATC 4 cut(s) 229, 454, 533, 824
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 4 cut(s) 284, 672, 744, 870
BciVI GTATCC 1 cut(s) 817
BcoDI GTCTC 1 cut(s) 193
BfmI CTRYAG 2 cut(s) 606, 686
BfrI CTTAAG 2 cut(s) 440, 482
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 3 cut(s) 631, 689, 692
BlsI GCNGC 3 cut(s) 632, 690, 693
Bme1390I CCNGG 4 cut(s) 284, 672, 744, 870
Bme18I GGWCC 2 cut(s) 72, 463
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 72, 463
BmiI GGNNCC 4 cut(s) 73, 570, 589, 788
BmrFI CCNGG 4 cut(s) 284, 672, 744, 870
BmrI ACTGGG 1 cut(s) 775
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 1 cut(s) 775
BpmI CTGGAG 2 cut(s) 74, 363
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 4 cut(s) 412, 670, 671, 804
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 5 cut(s) 57, 346, 507, 770, 781
BseBI CCWGG 4 cut(s) 284, 672, 744, 870
BseDI CCNNGG 4 cut(s) 412, 670, 671, 804
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 5 cut(s) 57, 346, 507, 770, 781
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 3 cut(s) 617, 700, 703
Bsh1236I CGCG 3 cut(s) 41, 183, 213
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 107, 742, 936
BshNI GGYRCC 1 cut(s) 568
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 85, 149
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 85, 149
BsnI GGCC 3 cut(s) 107, 742, 936
Bso31I GGTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 279, 571, 791
Bsp143I GATC 6 cut(s) 18, 117, 436, 477, 493, 587
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 5 cut(s) 181, 211, 218, 466, 491
BspANI GGCC 3 cut(s) 107, 742, 936
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 3 cut(s) 41, 183, 213
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 4 cut(s) 73, 570, 589, 788
BspMAI CTGCAG 2 cut(s) 610, 690
BspPI GGATC 5 cut(s) 444, 472, 501, 582, 595
BspT107I GGYRCC 1 cut(s) 568
BspTI CTTAAG 2 cut(s) 440, 482
BspTNI GGTCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 5 cut(s) 57, 346, 507, 770, 781
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 4 cut(s) 412, 670, 671, 804
BssMI GATC 6 cut(s) 18, 117, 436, 477, 493, 587
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 412, 804
Bst2UI CCWGG 4 cut(s) 284, 672, 744, 870
Bst4CI ACNGT 2 cut(s) 274, 736
Bst6I CTCTTC 1 cut(s) 671
BstACI GRCGYC 1 cut(s) 162
BstAFI CTTAAG 2 cut(s) 440, 482
BstC8I GCNNGC 3 cut(s) 203, 660, 934
BstDEI CTNAG 2 cut(s) 654, 792
BstDSI CCRYGG 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 3 cut(s) 41, 183, 213
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 6 cut(s) 21, 120, 439, 480, 496, 590
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 6 cut(s) 18, 117, 436, 477, 493, 587
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 29, 38, 865, 893
BstNI CCWGG 4 cut(s) 284, 672, 744, 870
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 4 cut(s) 282, 670, 742, 868
BstSFI CTRYAG 2 cut(s) 606, 686
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 3 cut(s) 41, 183, 213
BstV1I GCAGC 3 cut(s) 617, 700, 703
BstX2I RGATCY 3 cut(s) 436, 493, 587
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 3 cut(s) 436, 493, 587
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 3 cut(s) 107, 742, 936
BtgI CCRYGG 1 cut(s) 412
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 2 cut(s) 30, 615
BtsIMutI CAGTG 4 cut(s) 30, 615, 741, 788
Cac8I GCNNGC 3 cut(s) 203, 660, 934
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 72, 463
CseI GACGC 2 cut(s) 47, 151
CsiI ACCWGGT 1 cut(s) 282
Csp6I GTAC 5 cut(s) 295, 382, 535, 720, 775
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 8 cut(s) 146, 202, 298, 413, 419, 542, 760, 770
CviQI GTAC 5 cut(s) 295, 382, 535, 720, 775
DdeI CTNAG 2 cut(s) 654, 792
DpnI GATC 6 cut(s) 20, 119, 438, 479, 495, 589
DpnII GATC 6 cut(s) 18, 117, 436, 477, 493, 587
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 671
Eco130I CCWWGG 2 cut(s) 412, 804
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 72, 463
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 507
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 4 cut(s) 282, 670, 742, 868
EcoT14I CCWWGG 2 cut(s) 412, 804
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 2 cut(s) 412, 804
FaeI CATG 8 cut(s) 149, 205, 301, 416, 422, 545, 763, 773
FaqI GGGAC 2 cut(s) 85, 149
FatI CATG 8 cut(s) 145, 201, 297, 412, 418, 541, 759, 769
FauI CCCGC 2 cut(s) 218, 225
Fnu4HI GCNGC 3 cut(s) 631, 689, 692
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 3 cut(s) 631, 689, 692
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 1 cut(s) 200
GluI GCNGC 3 cut(s) 631, 689, 692
GsuI CTGGAG 2 cut(s) 74, 363
HaeIII GGCC 3 cut(s) 107, 742, 936
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 47, 151
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 8 cut(s) 149, 205, 301, 416, 422, 545, 763, 773
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 5 cut(s) 136, 352, 373, 423, 677
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 88, 537
Hpy188I TCNGA 6 cut(s) 65, 378, 682, 795, 850, 941
Hpy188III TCNNGA 5 cut(s) 46, 313, 457, 529, 760
Hpy8I GTNNAC 2 cut(s) 88, 537
Hpy99I CGWCG 3 cut(s) 125, 227, 368
HpyAV CCTTC 8 cut(s) 52, 62, 97, 152, 257, 415, 590, 886
HpyCH4III ACNGT 2 cut(s) 274, 736
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 393, 608, 633, 688, 838, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 38, 865, 893
HpyF3I CTNAG 2 cut(s) 654, 792
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 8 cut(s) 149, 205, 301, 416, 422, 545, 763, 773
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 6 cut(s) 18, 117, 436, 477, 493, 587
LmnI GCTCC 3 cut(s) 14, 699, 786
Lsp1109I GCAGC 3 cut(s) 617, 700, 703
LweI GCATC 1 cut(s) 847
MabI ACCWGGT 1 cut(s) 282
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 649
MalI GATC 6 cut(s) 20, 119, 438, 479, 495, 589
MboI GATC 6 cut(s) 18, 117, 436, 477, 493, 587
MboII GAAGA 2 cut(s) 167, 658
MflI RGATCY 3 cut(s) 436, 493, 587
MhlI GDGCHC 3 cut(s) 279, 571, 791
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 1 cut(s) 817
MluI ACGCGT 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 742
MlyI GAGTC 2 cut(s) 130, 382
MmeI TCCRAC 2 cut(s) 43, 828
MnlI CCTC 7 cut(s) 137, 142, 152, 177, 178, 456, 801
Mox20I TGGCCA 1 cut(s) 742
MroXI GAANNNNTTC 2 cut(s) 351, 579
MscI TGGCCA 1 cut(s) 742
MseI TTAA 3 cut(s) 369, 441, 483
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 742
MspCI CTTAAG 2 cut(s) 440, 482
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 4 cut(s) 284, 672, 744, 870
MvaI CCWGG 4 cut(s) 284, 672, 744, 870
MvnI CGCG 3 cut(s) 41, 183, 213
MwoI GCNNNNNNNGC 4 cut(s) 29, 38, 865, 893
NcoI CCATGG 1 cut(s) 412
NdeII GATC 6 cut(s) 18, 117, 436, 477, 493, 587
NlaIII CATG 8 cut(s) 149, 205, 301, 416, 422, 545, 763, 773
NlaIV GGNNCC 4 cut(s) 73, 570, 589, 788
NmuCI GTSAC 1 cut(s) 649
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 507
PagI TCATGA 1 cut(s) 759
PasI CCCWGGG 1 cut(s) 671
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 331
PdmI GAANNNNTTC 2 cut(s) 351, 579
PfeI GAWTC 3 cut(s) 352, 423, 677
PkrI GCNGC 3 cut(s) 632, 690, 693
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 2 cut(s) 130, 381
PpsI GAGTC 2 cut(s) 130, 381
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 4 cut(s) 282, 670, 742, 868
PspGI CCWGG 4 cut(s) 282, 670, 742, 868
PspN4I GGNNCC 4 cut(s) 73, 570, 589, 788
PspPI GGNCC 2 cut(s) 72, 463
PspPPI RGGWCCY 1 cut(s) 72
PspXI VCTCGAGB 1 cut(s) 507
PstI CTGCAG 2 cut(s) 610, 690
PsuI RGATCY 3 cut(s) 436, 493, 587
PvuI CGATCG 1 cut(s) 21
RgaI GCGATCGC 1 cut(s) 21
RsaI GTAC 5 cut(s) 296, 383, 536, 721, 776
RsaNI GTAC 5 cut(s) 295, 382, 535, 720, 775
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 3 cut(s) 369, 441, 483
SatI GCNGC 3 cut(s) 631, 689, 692
Sau3AI GATC 6 cut(s) 18, 117, 436, 477, 493, 587
Sau96I GGNCC 2 cut(s) 72, 463
SchI GAGTC 2 cut(s) 130, 382
ScrFI CCNGG 4 cut(s) 284, 672, 744, 870
SduI GDGCHC 3 cut(s) 279, 571, 791
SexAI ACCWGGT 1 cut(s) 282
SfaAI GCGATCGC 1 cut(s) 21
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 2 cut(s) 606, 686
Sfr274I CTCGAG 1 cut(s) 507
SgfI GCGATCGC 1 cut(s) 21
SinI GGWCC 2 cut(s) 72, 463
SlaI CTCGAG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 440, 482, 507
SmoI CTYRAG 3 cut(s) 440, 482, 507
SphI GCATGC 1 cut(s) 205
Sse9I AATT 1 cut(s) 817
SsiI CCGC 5 cut(s) 181, 211, 218, 466, 491
StyD4I CCNGG 4 cut(s) 282, 670, 742, 868
StyI CCWWGG 2 cut(s) 412, 804
TaaI ACNGT 2 cut(s) 274, 736
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 45, 508
TasI AATT 1 cut(s) 817
TatI WGTACW 2 cut(s) 294, 534
TfiI GAWTC 3 cut(s) 352, 423, 677
Tru1I TTAA 3 cut(s) 369, 441, 483
Tru9I TTAA 3 cut(s) 369, 441, 483
TscAI CASTG 4 cut(s) 30, 615, 741, 788
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 630, 688, 691
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 744, 776
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 4 cut(s) 30, 615, 741, 788
Vha464I CTTAAG 2 cut(s) 440, 482
VpaK11BI GGWCC 2 cut(s) 72, 463
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 507
XmnI GAANNNNTTC 2 cut(s) 351, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.