Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Reverse (-)

30541229 .. 30542271

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTCTCCCGCGACCCACACGTCGTCAGGTTGATGGATGTGAAGCAAGGCACGAATAAGGAAGGCAAGACTGTGCTTTACTTGTCTGATGTACTAACTCTGCAAAGGTGTTGCCTTTTGCCATGGTCATGGAATCTTACACAGATATTGACCCTTTGGTATAGGGCACCAGAAGTCCTTCTGGGATCTACACATTACTCAACTACAGTGGATATTTGGTCTGTTGGCTGCATATTTGCTGAACTTGTCACAAAGCAAGCACTCTTCCCTGGGGATTCTGAACTGCAGCAGCTCCTACATATATTTAGGTTGACCAAGATGTCTCCAGTTTTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

112

Amino Acids

12.81

Weight (kDa)

7.75

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 101	2.4e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 319
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	193
AfaI	GTAC	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	228, 286, 289
Asp700I	GAANNNNTTC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	215, 298, 301
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	204, 284
BisI	GCNGC	3 cut(s)	229, 287, 290
BlsI	GCNGC	3 cut(s)	230, 288, 291
Bme1390I	CCNGG	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	122, 268, 269
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	122, 268, 269
BseGI	GGATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	215, 298, 301
Bsh1236I	CGCG	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	122, 268, 269
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	73, 208
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	204, 284
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	215, 298, 301
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	92
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	2 cut(s)	123, 129
CviJI	RGCY	2 cut(s)	228, 292
CviKI_1	RGCY	2 cut(s)	228, 292
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DrdI	GACNNNNNNGTC	2 cut(s)	20, 319
DseDI	GACNNNNNNGTC	2 cut(s)	20, 319
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	2 cut(s)	126, 132
FaiI	YATR	6 cut(s)	124, 130, 162, 233, 300, 302
FatI	CATG	2 cut(s)	122, 128
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	229, 287, 290
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	229, 287, 290
GluI	GCNGC	3 cut(s)	229, 287, 290
GsuI	CTGGAG	1 cut(s)	309
Hin1II	CATG	2 cut(s)	126, 132
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	133, 275
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	88, 280
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	56, 188
HpyCH4III	ACNGT	2 cut(s)	73, 208
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	103, 231, 286
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	126, 132
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	5 cut(s)	13, 167, 183, 255, 282
Lsp1109I	GCAGC	3 cut(s)	215, 298, 301
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	126, 132
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	133, 275
PkrI	GCNGC	3 cut(s)	230, 288, 291
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	127
SatI	GCNGC	3 cut(s)	229, 287, 290
Sau3AI	GATC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	24, 32, 110, 294, 311
SfcI	CTRYAG	2 cut(s)	204, 284
SmiMI	CAYNNNNRTG	1 cut(s)	127
SsiI	CCGC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	73, 208
TaiI	ACGT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	133, 275
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	228, 286, 289
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.