Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

252075 .. 254362

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1002500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGATGATCGGAGGAGCGGCGAATAAAGGAGCGTCGGCGATGGAGGCGTTCGAGAAGCTGGAGAAGGTGGGAGAAGGGACTTACGGGAAGGTGTACAGAGCGAGAGAGAAGGCGACTGGGAAAATCGTGGCCCTCAAGAAAACTCGCCTCCACGAGGACGAGGAAGGCGTCCCTCCCACCACTCTCCGCGAAGTCTCCATTCTCCGCATGCTCTCCAGAGACCCCCACATCGTCAAGCTGATGGATGTGAAACAAGGGCAGAACAAGGAGGGAAAGACCGTACTCTACTTGGTGTTTGAGTACATGGACACTGATCTCAAGAAATTCATCCGCACCTTCCGTCAATCTGGAGAGCACATTCCGTCCCCCACCGTTAAGAGCCTGATGTTCCAACTCTGCAAAGGTGTTGCCTTTTGCCATGGTCATGGAATTTTGCACAGGGATCTTAAGCCTCACAATCTTCTGATGGACCGCAAGTCTATGATGCTTAAAATTGCGGACCTTGGACTTGCTAGAGCTTTTACTGTGCCACTCAAGAAGTATACTCATGAGATATTGACCCTCTGGTATAGGGCTCCAGAAGTTCTTCTGGGAGCTACACATTACTCAACTGCAGTGGATATTTGGTCTGTTGGCTGTATATTTGCTGAACTTGTCACGAAGCAAGCACTCTTCCCTGGGGATTCTGAACTGCAGCAGCTCCTACATATATTCAGGTTGTTGGGCACTCCAAATGAGGTGGTGTGGCCAGGTGTAAGCAAGCTCAAGGACTGGCATGAGTACCCCCAGTGGAGTCCCCAAAGTTTGTCGAAGGCTGTTCCCAATTTGGACGAGATGGGGCTGGATTTGTTGTTGCAAATGTTGCAATACGATCCTGCAAAACGCATTTCAGCTAAGACAGCTATGGAGCACCCTTACTTTGATGGTTTGAACAAGGATTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

35.79

Weight (kDa)

8.89

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 308	1.1e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 222	1.5e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	545
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	20, 190, 208, 334, 475, 500
AclWI	GGATC	2 cut(s)	453, 869
AcoI	YGGCCR	1 cut(s)	749
AcsI	RAATTY	2 cut(s)	326, 432
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	4 cut(s)	98, 285, 305, 785
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	934
AhdI	GACNNNNNGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	679, 751
AluBI	AGCT	8 cut(s)	61, 241, 521, 599, 703, 766, 896, 905
AluI	AGCT	8 cut(s)	61, 241, 521, 599, 703, 766, 896, 905
Alw21I	GWGCWC	2 cut(s)	360, 915
Alw26I	GTCTC	2 cut(s)	202, 216
AlwI	GGATC	2 cut(s)	453, 869
AoxI	GGCC	2 cut(s)	132, 749
ApeKI	GCWGC	2 cut(s)	697, 700
ApoI	RAATTY	2 cut(s)	326, 432
Asp700I	GAANNNNTTC	1 cut(s)	588
AspS9I	GGNCC	3 cut(s)	133, 472, 502
AvaII	GGWCC	2 cut(s)	472, 502
BaeGI	GKGCMC	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	360, 915
BbvI	GCAGC	2 cut(s)	709, 712
BccI	CCATC	5 cut(s)	37, 238, 463, 832, 920
BciT130I	CCWGG	2 cut(s)	681, 753
BcoDI	GTCTC	2 cut(s)	202, 216
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	615, 695
BfrI	CTTAAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	21, 698, 701
BlsI	GCNGC	3 cut(s)	22, 699, 702
Bme1390I	CCNGG	2 cut(s)	681, 753
Bme18I	GGWCC	2 cut(s)	472, 502
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	133, 472, 502
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	2 cut(s)	681, 753
BmrI	ACTGGG	2 cut(s)	129, 784
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	2 cut(s)	129, 784
BpmI	CTGGAG	4 cut(s)	83, 202, 372, 564
BpuEI	CTTGAG	4 cut(s)	122, 305, 521, 752
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	421, 505, 679, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	124, 779, 790
BseBI	CCWGG	2 cut(s)	681, 753
BseDI	CCNNGG	4 cut(s)	421, 505, 679, 680
BseGI	GGATG	2 cut(s)	253, 330
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	3 cut(s)	124, 779, 790
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	2 cut(s)	709, 712
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	134, 751
BsiHKAI	GWGCWC	2 cut(s)	360, 915
BslFI	GGGAC	4 cut(s)	94, 158, 352, 783
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	202, 216
BsmFI	GGGAC	4 cut(s)	94, 158, 352, 783
BsnI	GGCC	2 cut(s)	134, 751
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	4 cut(s)	360, 580, 731, 915
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	9, 316, 445, 874
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	6 cut(s)	20, 190, 208, 334, 475, 500
BspANI	GGCC	2 cut(s)	134, 751
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	2 cut(s)	619, 699
BspPI	GGATC	2 cut(s)	453, 869
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	124, 779, 790
BssECI	CCNNGG	4 cut(s)	421, 505, 679, 680
BssMI	GATC	4 cut(s)	9, 316, 445, 874
BssNAI	GTATAC	1 cut(s)	546
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	421, 505
Bst1107I	GTATAC	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	681, 753
Bst4CI	ACNGT	3 cut(s)	283, 376, 529
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	212, 669, 764
BstDEI	CTNAG	1 cut(s)	897
BstDSI	CCRYGG	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	253, 330
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	12, 319, 448, 877
BstMAI	GTCTC	2 cut(s)	202, 216
BstMBI	GATC	4 cut(s)	9, 316, 445, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 865, 902
BstNI	CCWGG	2 cut(s)	681, 753
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	679, 751
BstSFI	CTRYAG	2 cut(s)	615, 695
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	709, 712
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	445
BstZ17I	GTATAC	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	134, 751
BtgI	CCRYGG	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	253, 330
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	312, 624, 797
Cac8I	GCNNGC	3 cut(s)	212, 669, 764
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	133, 472, 502
CseI	GACGC	2 cut(s)	24, 160
Csp6I	GTAC	4 cut(s)	97, 284, 304, 784
CspCI	CAANNNNNGTGG	4 cut(s)	600, 635, 723, 758
CviAII	CATG	6 cut(s)	211, 307, 422, 428, 551, 779
CviQI	GTAC	4 cut(s)	97, 284, 304, 784
DdeI	CTNAG	1 cut(s)	897
DpnI	GATC	4 cut(s)	11, 318, 447, 876
DpnII	GATC	4 cut(s)	9, 316, 445, 874
DriI	GACNNNNNGTC	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	680
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	421, 505
Eco24I	GRGCYC	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	472, 502
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	679, 751
EcoT14I	CCWWGG	2 cut(s)	421, 505
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	421, 505
FaeI	CATG	6 cut(s)	214, 310, 425, 431, 554, 782
FaqI	GGGAC	4 cut(s)	94, 158, 352, 783
FatI	CATG	6 cut(s)	210, 306, 421, 427, 550, 778
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	3 cut(s)	21, 698, 701
FokI	GGATG	2 cut(s)	260, 317
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	3 cut(s)	21, 698, 701
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	3 cut(s)	21, 698, 701
GsuI	CTGGAG	4 cut(s)	83, 202, 372, 564
HaeIII	GGCC	2 cut(s)	134, 751
HgaI	GACGC	2 cut(s)	24, 160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	214, 310, 425, 431, 554, 782
HinfI	GANTC	3 cut(s)	686, 796, 941
Hpy166II	GTNNAC	2 cut(s)	97, 546
Hpy188I	TCNGA	4 cut(s)	14, 468, 691, 950
Hpy188III	TCNNGA	9 cut(s)	55, 139, 219, 322, 351, 538, 551, 581, 661
Hpy8I	GTNNAC	2 cut(s)	97, 546
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	7 cut(s)	61, 71, 85, 106, 161, 349, 808
HpyCH4III	ACNGT	3 cut(s)	283, 376, 529
HpyCH4V	TGCA	7 cut(s)	402, 439, 617, 697, 859, 868, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 865, 902
HpyF3I	CTNAG	1 cut(s)	897
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	214, 310, 425, 431, 554, 782
Kzo9I	GATC	4 cut(s)	9, 316, 445, 874
LmnI	GCTCC	6 cut(s)	17, 32, 583, 596, 708, 910
Lsp1109I	GCAGC	2 cut(s)	709, 712
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	11, 318, 447, 876
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	4 cut(s)	9, 316, 445, 874
MboII	GAAGA	3 cut(s)	455, 581, 667
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	4 cut(s)	360, 580, 731, 915
MlsI	TGGCCA	1 cut(s)	751
MluCI	AATT	4 cut(s)	326, 432, 495, 826
MluNI	TGGCCA	1 cut(s)	751
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	418
Mox20I	TGGCCA	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	751
MseI	TTAA	3 cut(s)	378, 450, 492
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	751
MspCI	CTTAAG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	681, 753
MvaI	CCWGG	2 cut(s)	681, 753
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	47, 865, 902
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	4 cut(s)	9, 316, 445, 874
NlaIII	CATG	6 cut(s)	214, 310, 425, 431, 554, 782
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	550
PasI	CCCWGGG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	686, 941
PkrI	GCNGC	3 cut(s)	22, 699, 702
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	679, 751
PspGI	CCWGG	2 cut(s)	679, 751
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	3 cut(s)	133, 472, 502
PstI	CTGCAG	2 cut(s)	619, 699
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	4 cut(s)	98, 285, 305, 785
RsaNI	GTAC	4 cut(s)	97, 284, 304, 784
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	378, 450, 492
SatI	GCNGC	3 cut(s)	21, 698, 701
Sau3AI	GATC	4 cut(s)	9, 316, 445, 874
Sau96I	GGNCC	3 cut(s)	133, 472, 502
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	2 cut(s)	681, 753
SduI	GDGCHC	4 cut(s)	360, 580, 731, 915
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	2 cut(s)	615, 695
SinI	GGWCC	2 cut(s)	472, 502
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	5 cut(s)	137, 320, 449, 536, 767
SmoI	CTYRAG	5 cut(s)	137, 320, 449, 536, 767
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	4 cut(s)	326, 432, 495, 826
SsiI	CCGC	6 cut(s)	20, 190, 208, 334, 475, 500
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	679, 751
StyI	CCWWGG	2 cut(s)	421, 505
TaaI	ACNGT	3 cut(s)	283, 376, 529
TaqI	TCGA	2 cut(s)	54, 812
TasI	AATT	4 cut(s)	326, 432, 495, 826
TatI	WGTACW	2 cut(s)	96, 303
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	686, 941
Tru1I	TTAA	3 cut(s)	378, 450, 492
Tru9I	TTAA	3 cut(s)	378, 450, 492
TscAI	CASTG	3 cut(s)	319, 624, 797
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	697, 700
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	319
TspGWI	ACGGA	2 cut(s)	332, 354
TspRI	CASTG	3 cut(s)	319, 624, 797
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	472, 502
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	326, 432
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.