Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

28364518 .. 28368300

Gene Structure 3783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGAAGGCAGTGATGATCGTAGTGTCGGCGATGGACGCATTCGAGAAACTAGAGAAGGTCGGAGAAGGGACCTACGGCAAGGTTTACAGAGCCAAAAAGAAGGCCACCGGCAAGATCGTATCCATAAAAAAGACTCGCCTCCACGAGGACGAAGAAGGCGTCCCTCCCACCACTCTCCGCGAAGTCTCCATTTTGCGCATGCTCTCCCGCGACCCACACGTCATCAGGTTGATGGATGTGAAGCAAGGCACGAATAAGGAAGGCAAGACTGTGCTCTACTTGGTTTTGATTGGCTCACTCTCCTTTACCGTGATTTGCAAGGATCTTAAGCCTTACAATCTCCTGATGGATCGCAAGACATTTACTCTGCCCATCAAGAAGTATACTCATGAGATATTGACCCTTTGGTATAGGGCACCAGAAGTCCTTCTGGGATCTACATATTACTCAACTACAGTGGATATTTGGTCTGTTGGCTGCATATTTGCTGAACTTATCACAAAGCAAACACTCTTCCTTGGGGATTCTGAATTGCAGCAGCTCCTACATATATTCAGGTTAGTGAAGAATTGCCTCCATGACTCTACTTCAGAATCGGCATGGTCCTCTTTATTCTCCTTTTTACTAACCCACTGGCAGCCTAGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

233

Amino Acids

26.55

Weight (kDa)

9.31

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 90	1e-12	Protein kinase domain
Pkinase	PF00069	104 - 188	1.9e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	2 cut(s)	183, 213
AciI	CCGC	2 cut(s)	181, 211
AclWI	GGATC	3 cut(s)	333, 360, 445
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	220
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	1 cut(s)	544
AluI	AGCT	1 cut(s)	544
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	3 cut(s)	333, 360, 445
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	480, 538, 541, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	72, 606
AvaII	GGWCC	2 cut(s)	72, 606
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	467, 550, 553, 652
BccI	CCATC	4 cut(s)	28, 229, 343, 383
BceAI	ACGGC	1 cut(s)	94
BciVI	GTATCC	2 cut(s)	133, 670
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	53, 645
BfmI	CTRYAG	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	2 cut(s)	133, 670
BisI	GCNGC	4 cut(s)	481, 539, 542, 641
BlsI	GCNGC	4 cut(s)	482, 540, 543, 642
Bme18I	GGWCC	2 cut(s)	72, 606
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	72, 606
BmiI	GGNNCC	2 cut(s)	73, 420
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	4 cut(s)	467, 550, 553, 652
Bsh1236I	CGCG	2 cut(s)	183, 213
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	85, 149
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	85, 149
BsmI	GAATGC	2 cut(s)	41, 692
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	279, 421
Bsp143I	GATC	5 cut(s)	18, 117, 325, 352, 437
BspACI	CCGC	2 cut(s)	181, 211
BspANI	GGCC	1 cut(s)	107
BspFNI	CGCG	2 cut(s)	183, 213
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	73, 420
BspPI	GGATC	3 cut(s)	333, 360, 445
BspT107I	GGYRCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	5 cut(s)	18, 117, 325, 352, 437
BssNAI	GTATAC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	520
Bst1107I	GTATAC	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	3 cut(s)	274, 313, 460
Bst6I	CTCTTC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	183, 213
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	21, 120, 328, 355, 440
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	5 cut(s)	18, 117, 325, 352, 437
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	2 cut(s)	183, 213
BstV1I	GCAGC	4 cut(s)	467, 550, 553, 652
BstX2I	RGATCY	2 cut(s)	325, 437
BstYI	RGATCY	2 cut(s)	325, 437
BstZ17I	GTATAC	1 cut(s)	387
BsuI	GTATCC	2 cut(s)	133, 670
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 465, 634
Cac8I	GCNNGC	1 cut(s)	203
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	72, 606
CseI	GACGC	2 cut(s)	47, 151
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	4 cut(s)	202, 392, 581, 603
CviJI	RGCY	7 cut(s)	95, 107, 297, 334, 480, 544, 643
CviKI_1	RGCY	7 cut(s)	95, 107, 297, 334, 480, 544, 643
DpnI	GATC	5 cut(s)	20, 119, 327, 354, 439
DpnII	GATC	5 cut(s)	18, 117, 325, 352, 437
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	72, 606
Eco57I	CTGAAG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	4 cut(s)	205, 395, 584, 606
FaqI	GGGAC	2 cut(s)	85, 149
FatI	CATG	4 cut(s)	201, 391, 580, 602
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	481, 539, 542, 641
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	481, 539, 542, 641
FspBI	CTAG	2 cut(s)	53, 645
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	4 cut(s)	481, 539, 542, 641
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	47, 151
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	205, 395, 584, 606
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	136, 527, 584, 596
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	88, 387
Hpy188I	TCNGA	3 cut(s)	65, 532, 595
Hpy188III	TCNNGA	4 cut(s)	46, 346, 379, 392
Hpy8I	GTNNAC	2 cut(s)	88, 387
HpyAV	CCTTC	6 cut(s)	52, 62, 97, 152, 257, 440
HpyCH4III	ACNGT	3 cut(s)	274, 313, 460
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	321, 483, 538, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	205, 395, 584, 606
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	18, 117, 325, 352, 437
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	7 cut(s)	124, 214, 359, 419, 435, 544, 622
Lsp1109I	GCAGC	4 cut(s)	467, 550, 553, 652
MaeI	CTAG	2 cut(s)	53, 645
MaeII	ACGT	1 cut(s)	222
MalI	GATC	5 cut(s)	20, 119, 327, 354, 439
MboI	GATC	5 cut(s)	18, 117, 325, 352, 437
MboII	GAAGA	3 cut(s)	167, 508, 580
MflI	RGATCY	2 cut(s)	325, 437
MhlI	GDGCHC	2 cut(s)	279, 421
MluCI	AATT	3 cut(s)	533, 571, 648
MlyI	GAGTC	2 cut(s)	130, 578
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	142, 152, 177, 587, 619
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	3 cut(s)	330, 651, 669
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	111
Mva1269I	GAATGC	2 cut(s)	41, 692
MvnI	CGCG	2 cut(s)	183, 213
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	5 cut(s)	18, 117, 325, 352, 437
NlaIII	CATG	4 cut(s)	205, 395, 584, 606
NlaIV	GGNNCC	2 cut(s)	73, 420
NsbI	TGCGCA	1 cut(s)	200
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	2 cut(s)	41, 692
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	527, 596
PkrI	GCNGC	4 cut(s)	482, 540, 543, 642
PleI	GAGTC	2 cut(s)	130, 578
PpsI	GAGTC	2 cut(s)	130, 578
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	73, 420
PspPI	GGNCC	2 cut(s)	72, 606
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	325, 437
SaqAI	TTAA	3 cut(s)	330, 651, 669
SatI	GCNGC	4 cut(s)	481, 539, 542, 641
Sau3AI	GATC	5 cut(s)	18, 117, 325, 352, 437
Sau96I	GGNCC	2 cut(s)	72, 606
SchI	GAGTC	2 cut(s)	130, 578
SduI	GDGCHC	2 cut(s)	279, 421
SetI	ASST	7 cut(s)	63, 77, 87, 225, 233, 546, 563
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	72, 606
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	533, 571, 648
SsiI	CCGC	2 cut(s)	181, 211
SspMI	CTAG	2 cut(s)	53, 645
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	274, 313, 460
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	533, 571, 648
TfiI	GAWTC	2 cut(s)	527, 596
Tru1I	TTAA	3 cut(s)	330, 651, 669
Tru9I	TTAA	3 cut(s)	330, 651, 669
TscAI	CASTG	3 cut(s)	18, 465, 641
TseI	GCWGC	4 cut(s)	480, 538, 541, 640
TspRI	CASTG	3 cut(s)	18, 465, 641
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	72, 606
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	53, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.