Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025101.1

Orthogroup ID

OG0009771

Physical Location & Seq

Genomic Coordinates Forward (+)

4574 .. 5114

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025101.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggagaaggcaggagcgatcgcagtgtcggctatggacgcgttcgagaaactggagaaggtcggagaagggacctacggcaaggtttacagagccagagagaaggccaccggcaagatcgtcgccctcaaaaagactcgcctccatgaggacgaagaaggcgtccctcccaccactctccgcgaggtctccattttgcgcatgctctcccgcgacccgcacgtcgtcaggttgatggatgtgaagcaaggcacgaataaggaaggcaagactgtgctctacttggtgtttgagtacatggaaactgatgtcaagaaatacattcgcagtttccgtcaaactggagaaatgattcctgcccccgtcgttaaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

125

Amino Acids

14.13

Weight (kDa)

9.42

Isoelectric Point (pI)

23.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20930 AT1G76540
fragaria_vesca	FvH4_5g26360
malus_domestica	MD00G1064000.v1.1 MD06G1002500.v1.1
prunus_persica	Prupe.5G003700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408111 RchiOBHm_Chr6g0250951 RchiOBHm_Chr7g0217191
rosa_laevigata	RLG00000002503 RLG00000008290
rosa_multiflora	Rmu_sc0007586.1_g000005 Rmu_sc0022408.1_g000012 Rmu_sc0025101.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242510
rosa_rugosa	Rorug07G0167200
rosa_samantha	Rh7AG306000 Rh7BG297400 Rh7CG325100 Rh7DG305900
rosa_wichuraiana	Rw7G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	200
AccII	CGCG	3 cut(s)	41, 183, 213
AciI	CCGC	3 cut(s)	181, 211, 218
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	105
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AsiSI	GCGATCGC	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcoDI	GTCTC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	74, 363
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	57, 346
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	57, 346
Bsh1236I	CGCG	3 cut(s)	41, 183, 213
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	85, 149
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	85, 149
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	18, 117
BspACI	CCGC	3 cut(s)	181, 211, 218
BspANI	GGCC	1 cut(s)	107
BspFNI	CGCG	3 cut(s)	41, 183, 213
BspLI	GGNNCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	57, 346
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	2 cut(s)	18, 117
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	3 cut(s)	41, 183, 213
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	21, 120
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	18, 117
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 38
BstNSI	RCATGY	1 cut(s)	205
BstUI	CGCG	3 cut(s)	41, 183, 213
BsuRI	GGCC	1 cut(s)	107
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	2 cut(s)	47, 151
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	146, 202, 298
CviJI	RGCY	3 cut(s)	32, 95, 107
CviKI_1	RGCY	3 cut(s)	32, 95, 107
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	2 cut(s)	20, 119
DpnII	GATC	2 cut(s)	18, 117
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	72
FaeI	CATG	3 cut(s)	149, 205, 301
FaiI	YATR	4 cut(s)	35, 147, 203, 299
FaqI	GGGAC	2 cut(s)	85, 149
FatI	CATG	3 cut(s)	145, 201, 297
FauI	CCCGC	2 cut(s)	218, 225
FokI	GGATG	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	74, 363
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	47, 151
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	149, 205, 301
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	136, 352
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	65, 377
Hpy188III	TCNNGA	2 cut(s)	46, 313
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	3 cut(s)	125, 227, 368
HpyAV	CCTTC	5 cut(s)	52, 62, 97, 152, 257
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 38
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	149, 205, 301
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	18, 117
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	38, 109, 124, 214, 327, 369
MaeII	ACGT	1 cut(s)	222
MalI	GATC	2 cut(s)	20, 119
MboI	GATC	2 cut(s)	18, 117
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	279
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	137, 142, 152, 177, 178
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	369
MspI	CCGG	1 cut(s)	111
MvnI	CGCG	3 cut(s)	41, 183, 213
MwoI	GCNNNNNNNGC	2 cut(s)	29, 38
NdeII	GATC	2 cut(s)	18, 117
NlaIII	CATG	3 cut(s)	149, 205, 301
NlaIV	GGNNCC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	200
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 331
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	352
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
PvuI	CGATCG	1 cut(s)	21
RgaI	GCGATCGC	1 cut(s)	21
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	18, 117
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	7 cut(s)	63, 77, 87, 189, 225, 233, 375
SfaAI	GCGATCGC	1 cut(s)	21
SgfI	GCGATCGC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	72
SphI	GCATGC	1 cut(s)	205
SsiI	CCGC	3 cut(s)	181, 211, 218
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	45
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.