AT1G21000

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009294
Physical Location & Seq
Forward (+)
7337605 .. 7339452
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21000.1

Sequence Viewer

Length: 741 bp
ATGGGACCAATGATAAGAACAGAGGAAGAAGAAGACTATACAAGTCCACCGTGGCTAATGCCAATGCTACGAGGGAGTTACTTCGTCCCTTGTTCCATCCATGTCGATTCAAACAAAAACGAATGCAATTTGTTCTGTCTTGATTGTGCTGGAAATGCCTTTTGCTCTTACTGTTTAGTCAAACATAAAGACCATCGTGTTGTTCAGATACGAAGATCTTCGTACCATAACGTTGTGAGAGTGAATGAGATACAGAAGTTCATAGACATCGCTTGTGTTCAGACATATATTATCAACAGCGCAAAGATCGTGTTCCTCAATGAAAGACCTCAGCCTAGAATCGGTAAAGGTGTTACAAACACTTGTGAAATCTGTTGCAGAAGTCTCCTTGATTCTTTCAGGTTCTGCTCTCTCGGCTGCAAGCTTGGAGGAATGAGGAGAGGAGATTTATCTCTAACCTTCTCTTTGAAAGGAAAGCATGGGAGAGAGTACCTTGGTGGGTCGGAATCAGATGAAGCTACTACACCGACTAAGATGCGTAAGACCAATGCTTTCAACCGTCTGATGAGTGGTCTCTCGATCTCAACCGTTAGATTCGATGACTACGGTCCCAATGGTGATCAAAGGTCTTCAAGCTCTGGTGATGAAGGTGGTTTTAGTTTCTCTCCGGGAACACCTCCGATCTATAATCACCGGAATTCAAGCAGACGAAAGGGTGTCCCTCACCGTGCTCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

246

Amino Acids

27.63

Weight (kDa)

9.02

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 71 - 142 7.5e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 231
AcsI RAATTY 1 cut(s) 697
AfaI GTAC 2 cut(s) 224, 491
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 5 cut(s) 111, 469, 556, 633, 702
AluBI AGCT 3 cut(s) 424, 518, 636
AluI AGCT 3 cut(s) 424, 518, 636
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 389, 578
AlwNI CAGNNNCTG 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 697
Asp700I GAANNNNTTC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 5, 608
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 4 cut(s) 629, 653, 683, 716
AvaII GGWCC 2 cut(s) 5, 608
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BbsI GAAGAC 2 cut(s) 39, 621
Bbv12I GWGCWC 1 cut(s) 733
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 404
BccI CCATC 2 cut(s) 104, 201
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 389, 578
BfaI CTAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 2 cut(s) 5, 608
BmgT120I GGNCC 2 cut(s) 5, 608
BmiI GGNNCC 2 cut(s) 6, 610
BmrFI CCNGG 1 cut(s) 669
BmsI GCATC 1 cut(s) 525
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 39, 621
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 50, 493
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 50, 493
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 451, 456
BseXI GCAGC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 2 cut(s) 668, 694
BslFI GGGAC 4 cut(s) 18, 71, 594, 704
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 389, 578
BsmFI GGGAC 4 cut(s) 18, 71, 594, 704
BsmI GAATGC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 733
Bsp143I GATC 5 cut(s) 215, 306, 579, 619, 681
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 6, 610
BspTNI GGTCTC 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 50, 493
BssMI GATC 5 cut(s) 215, 306, 579, 619, 681
BssT1I CCWWGG 1 cut(s) 493
Bst4CI ACNGT 6 cut(s) 51, 173, 560, 589, 608, 728
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 330, 531
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 5 cut(s) 218, 309, 582, 622, 684
BstMAI GTCTC 2 cut(s) 389, 578
BstMBI GATC 5 cut(s) 215, 306, 579, 619, 681
BstMWI GCNNNNNNNGC 2 cut(s) 155, 414
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 2 cut(s) 39, 621
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 405
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 5, 608
Csp6I GTAC 2 cut(s) 223, 490
CviAII CATG 2 cut(s) 101, 479
CviJI RGCY 6 cut(s) 55, 334, 417, 424, 518, 636
CviKI_1 RGCY 6 cut(s) 55, 334, 417, 424, 518, 636
CviQI GTAC 2 cut(s) 223, 490
DdeI CTNAG 2 cut(s) 330, 531
DpnI GATC 5 cut(s) 217, 308, 581, 621, 683
DpnII GATC 5 cut(s) 215, 306, 579, 619, 681
Eco130I CCWWGG 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 2 cut(s) 5, 608
EcoRI GAATTC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 2 cut(s) 104, 482
FaiI YATR 9 cut(s) 39, 102, 186, 228, 263, 286, 288, 480, 687
FaqI GGGAC 4 cut(s) 18, 71, 594, 704
FatI CATG 2 cut(s) 100, 478
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 418
HapII CCGG 2 cut(s) 668, 694
HhaI GCGC 1 cut(s) 302
Hin1II CATG 2 cut(s) 104, 482
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 5 cut(s) 107, 339, 392, 506, 594
HpaII CCGG 2 cut(s) 668, 694
HphI GGTGA 4 cut(s) 629, 653, 683, 716
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 6 cut(s) 207, 282, 505, 511, 564, 681
Hpy188III TCNNGA 2 cut(s) 140, 577
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 469, 641
HpyCH4III ACNGT 6 cut(s) 51, 173, 560, 589, 608, 728
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 126, 378, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 414
HpyF3I CTNAG 2 cut(s) 330, 531
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 104, 482
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 5 cut(s) 215, 306, 579, 619, 681
LmnI GCTCC 1 cut(s) 736
LpnPI CCDG 5 cut(s) 135, 385, 624, 681, 707
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 525
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 77, 352
MalI GATC 5 cut(s) 217, 308, 581, 621, 683
MboI GATC 5 cut(s) 215, 306, 579, 619, 681
MboII GAAGA 6 cut(s) 38, 41, 44, 210, 225, 621
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 2 cut(s) 127, 697
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 9 cut(s) 16, 65, 326, 339, 422, 429, 434, 687, 732
MroXI GAANNNNTTC 1 cut(s) 217
MspI CCGG 2 cut(s) 668, 694
MspR9I CCNGG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 155, 414
NciI CCSGG 1 cut(s) 669
NdeII GATC 5 cut(s) 215, 306, 579, 619, 681
NlaIII CATG 2 cut(s) 104, 482
NlaIV GGNNCC 2 cut(s) 6, 610
NmeAIII GCCGAG 1 cut(s) 393
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 5 cut(s) 107, 339, 392, 506, 594
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 1 cut(s) 419
PshAI GACNNNNGTC 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 6, 610
PspPI GGNCC 2 cut(s) 5, 608
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 224, 491
RsaNI GTAC 2 cut(s) 223, 490
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 5 cut(s) 215, 306, 579, 619, 681
Sau96I GGNCC 2 cut(s) 5, 608
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 1 cut(s) 525
SinI GGWCC 2 cut(s) 5, 608
Sse9I AATT 2 cut(s) 127, 697
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 667
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 6 cut(s) 51, 173, 560, 589, 608, 728
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 105, 578, 597
TasI AATT 2 cut(s) 127, 697
TfiI GAWTC 5 cut(s) 107, 339, 392, 506, 594
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 250, 336, 528, 660
TspGWI ACGGA 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 5, 608
XapI RAATTY 1 cut(s) 697
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.