AT1G76590

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009294
Physical Location & Seq
Forward (+)
28740540 .. 28742231
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76590.1

Sequence Viewer

Length: 738 bp
ATGGGACCGATGATGATGAGAGCAGAAGAAGATAACTACAATCTAAATCCTCCACCATGGCTAATCCCAATGCTAAGAGCAAACTACTTCATCCCTTGTTCAATCCACGCCGCTTCCAACAAAAGCGAGTGCAACATGTTCTGTCTTGACTGTTCTTCTGAGGCCTTTTGCTCTTACTGTTTGCTCAATCACAGAAACCATCGTGTCCTCCAGATACGGAGATCATCGTACCACAACGTTGTGAGAGTAAACGAGATTCAGAAGTACATAGACATATCTTGTGTTCAGACATATATAATCAACAGCGCAAGGATCGTTTTCTTGAACGAACGTCCTCAGCCAAGAATCGGCAAAGGAGTCACCAATACTTGTGAAATCTGTTGCAGAAGCCTTCTCGATTCTTTCCGTTTCTGCTCTCTCGGTTGCAAACTTGGAGGAATGAAGCGTGATCCAAGTCTAACCTTCTCTTTGAGAGGGAAGCATGGAAGAGAGTACGAAGGTGAGTGGGAATCTGATGAAGCGACTACACCAACTAAGATACGCAAGACATGTGCTTTCAACCGTCTGATGAGTGGTCTTTCCATCTCCACCGTTAAATGTGATTACTTGTCAGGAGATCAACCGTCTTCGAGCTCCGGTGATGAGAGCGGTTTTAAACTTTCTCCGGGGACACCGCCGATATATAATCACCGGAATTCAAGTAGACGGAAGGGCGTCCCACACCGTGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

245

Amino Acids

27.78

Weight (kDa)

9.01

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 73 - 144 2.9e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 703
AciI CCGC 3 cut(s) 111, 648, 674
AclI AACGTT 1 cut(s) 237
AclWI GGATC 2 cut(s) 320, 443
AcsI RAATTY 1 cut(s) 694
AcyI GRCGYC 1 cut(s) 714
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 3 cut(s) 230, 266, 494
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 2 cut(s) 135, 548
AgsI TTSAA 4 cut(s) 102, 325, 559, 699
AluBI AGCT 1 cut(s) 633
AluI AGCT 1 cut(s) 633
Alw21I GWGCWC 2 cut(s) 635, 730
AlwI GGATC 2 cut(s) 320, 443
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 694
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 4 cut(s) 352, 512, 650, 680
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 635, 730
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 207, 590
BcnI CCSGG 1 cut(s) 666
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 2 cut(s) 56, 665
BsaWI WCCGGW 2 cut(s) 635, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 56, 665
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 150, 350
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 635, 730
BsiSI CCGG 3 cut(s) 636, 665, 691
BslFI GGGAC 3 cut(s) 18, 682, 701
BslI CCNNNNNNNGG 1 cut(s) 347
BsmFI GGGAC 3 cut(s) 18, 682, 701
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 635, 730
Bsp143I GATC 4 cut(s) 221, 312, 448, 616
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 3 cut(s) 111, 648, 674
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 151, 349
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 320, 443
BsrBI CCGCTC 1 cut(s) 648
BssECI CCNNGG 2 cut(s) 56, 665
BssMI GATC 4 cut(s) 221, 312, 448, 616
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 6 cut(s) 152, 179, 563, 592, 624, 725
Bst6I CTCTTC 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 714
BstDEI CTNAG 4 cut(s) 74, 159, 336, 534
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 4 cut(s) 224, 315, 451, 619
BstMBI GATC 4 cut(s) 221, 312, 448, 616
BstNSI RCATGY 2 cut(s) 139, 552
BstSCI CCNGG 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 618
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 90
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 703
Csp6I GTAC 3 cut(s) 229, 265, 493
CviAII CATG 4 cut(s) 57, 136, 482, 549
CviJI RGCY 5 cut(s) 61, 164, 340, 390, 633
CviKI_1 RGCY 5 cut(s) 61, 164, 340, 390, 633
CviQI GTAC 3 cut(s) 229, 265, 493
DdeI CTNAG 4 cut(s) 74, 159, 336, 534
DpnI GATC 4 cut(s) 223, 314, 450, 618
DpnII GATC 4 cut(s) 221, 312, 448, 616
DraI TTTAAA 1 cut(s) 655
DraIII CACNNNGTG 1 cut(s) 725
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 4 cut(s) 60, 139, 485, 552
FaqI GGGAC 3 cut(s) 18, 682, 701
FatI CATG 4 cut(s) 56, 135, 481, 548
FblI GTMKAC 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 636, 665, 691
HgaI GACGC 1 cut(s) 703
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 4 cut(s) 60, 139, 485, 552
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 5 cut(s) 256, 345, 357, 398, 509
HpaII CCGG 3 cut(s) 636, 665, 691
HphI GGTGA 4 cut(s) 352, 512, 650, 680
Hpy166II GTNNAC 2 cut(s) 250, 704
Hpy188I TCNGA 5 cut(s) 160, 261, 288, 514, 567
Hpy188III TCNNGA 5 cut(s) 146, 211, 322, 395, 612
Hpy8I GTNNAC 2 cut(s) 250, 704
HpyAV CCTTC 4 cut(s) 401, 472, 491, 703
HpyCH4III ACNGT 6 cut(s) 152, 179, 563, 592, 624, 725
HpyCH4IV ACGT 2 cut(s) 237, 331
HpyCH4V TGCA 3 cut(s) 132, 384, 426
HpyF3I CTNAG 4 cut(s) 74, 159, 336, 534
HpySE526I ACGT 2 cut(s) 237, 331
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 4 cut(s) 60, 139, 485, 552
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 4 cut(s) 221, 312, 448, 616
LmnI GCTCC 2 cut(s) 638, 733
LpnPI CCDG 5 cut(s) 224, 597, 649, 678, 704
MaeII ACGT 2 cut(s) 237, 331
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 223, 314, 450, 618
MbiI CCGCTC 1 cut(s) 648
MboI GATC 4 cut(s) 221, 312, 448, 616
MboII GAAGA 5 cut(s) 38, 41, 147, 498, 618
MhlI GDGCHC 2 cut(s) 635, 730
MluCI AATT 1 cut(s) 694
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 6 cut(s) 60, 154, 218, 345, 428, 467
MseI TTAA 2 cut(s) 594, 654
MspI CCGG 3 cut(s) 636, 665, 691
MspR9I CCNGG 1 cut(s) 666
NciI CCSGG 1 cut(s) 666
NcoI CCATGG 1 cut(s) 56
NdeII GATC 4 cut(s) 221, 312, 448, 616
NlaIII CATG 4 cut(s) 60, 139, 485, 552
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 2 cut(s) 139, 552
PceI AGGCCT 1 cut(s) 164
PciI ACATGT 2 cut(s) 135, 548
PfeI GAWTC 4 cut(s) 256, 345, 398, 509
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PscI ACATGT 2 cut(s) 135, 548
Psp124BI GAGCTC 1 cut(s) 635
Psp1406I AACGTT 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
RsaI GTAC 3 cut(s) 230, 266, 494
RsaNI GTAC 3 cut(s) 229, 265, 493
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 2 cut(s) 594, 654
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 221, 312, 448, 616
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 2 cut(s) 635, 730
SetI ASST 5 cut(s) 240, 334, 464, 502, 635
SinI GGWCC 1 cut(s) 5
Sse9I AATT 1 cut(s) 694
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 3 cut(s) 111, 648, 674
SstI GAGCTC 1 cut(s) 635
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 6 cut(s) 152, 179, 563, 592, 624, 725
TaiI ACGT 2 cut(s) 240, 334
TaqI TCGA 2 cut(s) 396, 629
TaqII GACCGA 1 cut(s) 22
TasI AATT 1 cut(s) 694
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 4 cut(s) 256, 345, 398, 509
Tru1I TTAA 2 cut(s) 594, 654
Tru9I TTAA 2 cut(s) 594, 654
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 79, 455, 531
TspGWI ACGGA 3 cut(s) 232, 395, 721
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 694
XceI RCATGY 2 cut(s) 139, 552
XmiI GTMKAC 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.