Rroxscaffold_3G00241940

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009294
Physical Location & Seq
Reverse (-)
34274932 .. 34277922
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241940.1

Sequence Viewer

Length: 930 bp
ATGTCAAACCCCTTCGGCGCGCTCTACCAAAACGTGAACCGGCAACAACCCAATTCGATCGTCCGATACCCGCGACGACGTGAGCTCACCGCACTAGATTCATCGGTCGGGCAAGATGTGACGCCGCACTCTTCTCTCGCTCAAACCCTAAAGCGCTATCTTGAACGAGAACTACAACAGCAGCAGAGTGCAAAGATTGGGGCCGACTTCAACAGAGCTATGGTGAGTTCGATTGCGATTGGTCGAATGGGGAAGGAAGAGGATGAGAGGACTCCTCCCTGGTTGAAACCAATGCTTCGGGCAAAGTACTTCAACTCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGTAGAGGCCCTGCTTTGTGCCCTTCCTGTTTGATTCATCACCAAGGTCATCATTATGTTCAGATAAGAAGGTCGTCCTACCATAATGTGGTGAGAGTGAGTGAGATTCAGAGGTACATAGACATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAGATTGTGTTTCTGAATGAGAGGCCCCAGCCGAGGCCTGGAAAAGGGGTTACCTACACTTGTGAGATTTGCTGCCGAAGCCTGGTCGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGCTCGGAGGTATGGAGCGTGGTGACTCCGACCTTTCATTTACAGTGAGGTTTCCAAAAGCGACTCAGATGAATCAAATGTATAACCATATGAGGGGGTCAGAATCAGATGAATCAACAACCCCAAAGAAGATTGCAAAGACAACTCAAATGTTCAACCGTTTGATGATGGGGGAAGGCAATGCTACTTCCTCTGATGATGAGGCCACTGCCAATAATCTCTCGCCCTCCACTCCTCCCCTCTACAATGATCGCAATGCTGGAAGACGCAGACTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

309

Amino Acids

35.03

Weight (kDa)

9.18

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 147 - 218 1.1e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccII CGCG 2 cut(s) 20, 73
AciI CCGC 3 cut(s) 71, 90, 125
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 3 cut(s) 308, 488, 515
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 6 cut(s) 460, 564, 569, 575, 613, 742
AgsI TTSAA 5 cut(s) 164, 211, 286, 313, 805
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 3 cut(s) 278, 568, 612
AluBI AGCT 3 cut(s) 85, 218, 652
AluI AGCT 3 cut(s) 85, 218, 652
Alw21I GWGCWC 1 cut(s) 87
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 5 cut(s) 201, 379, 554, 566, 852
ApeKI GCWGC 2 cut(s) 181, 603
AspLEI GCGC 3 cut(s) 20, 22, 156
AspS9I GGNCC 3 cut(s) 201, 380, 555
AsuHPI GGTGA 5 cut(s) 79, 235, 404, 475, 683
BaeGI GKGCMC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 193, 590
BccI CCATC 1 cut(s) 811
BciT130I CCWGG 3 cut(s) 280, 570, 614
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 3 cut(s) 125, 182, 604
BlsI GCNGC 3 cut(s) 126, 183, 605
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 3 cut(s) 280, 570, 614
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 201, 380, 555
BmiI GGNNCC 2 cut(s) 202, 557
BmrFI CCNGG 3 cut(s) 280, 570, 614
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 919
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 278, 415, 563
Bsc4I CCNNNNNNNGG 6 cut(s) 460, 564, 569, 575, 613, 742
Bse118I RCCGGY 1 cut(s) 39
Bse3DI GCAATG 2 cut(s) 835, 910
BseBI CCWGG 3 cut(s) 280, 570, 614
BseDI CCNNGG 3 cut(s) 278, 415, 563
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 6 cut(s) 460, 564, 569, 575, 613, 742
BseMI GCAATG 2 cut(s) 835, 910
BseMII CTCAG 1 cut(s) 728
BsePI GCGCGC 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 264, 873
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 2 cut(s) 193, 590
BseYI CCCAGC 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 2 cut(s) 20, 73
Bsh1285I CGRYCG 2 cut(s) 60, 108
BshFI GGCC 5 cut(s) 203, 381, 556, 568, 854
BsiEI CGRYCG 2 cut(s) 60, 108
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 6 cut(s) 460, 564, 569, 575, 613, 742
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 5 cut(s) 203, 381, 556, 568, 854
Bsp1286I GDGCHC 2 cut(s) 87, 395
Bsp143I GATC 2 cut(s) 57, 898
BspACI CCGC 3 cut(s) 71, 90, 125
BspANI GGCC 5 cut(s) 203, 381, 556, 568, 854
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 2 cut(s) 20, 73
BspLI GGNNCC 2 cut(s) 202, 557
BsrDI GCAATG 2 cut(s) 835, 910
BsrFI RCCGGY 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 278, 415, 563
BssHII GCGCGC 1 cut(s) 18
BssMI GATC 2 cut(s) 57, 898
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 280, 570, 614
Bst4CI ACNGT 3 cut(s) 527, 694, 809
Bst6I CTCTTC 2 cut(s) 136, 252
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 20, 506, 650
BstDEI CTNAG 1 cut(s) 714
BstEII GGTNACC 1 cut(s) 580
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 20, 73
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 3 cut(s) 20, 22, 156
BstKTI GATC 2 cut(s) 60, 901
BstMBI GATC 2 cut(s) 57, 898
BstMCI CGRYCG 2 cut(s) 60, 108
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 3 cut(s) 280, 570, 614
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 278, 568, 612
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 2 cut(s) 20, 73
BstV1I GCAGC 2 cut(s) 193, 590
BstV2I GAAGAC 1 cut(s) 919
BsuRI GGCC 5 cut(s) 203, 381, 556, 568, 854
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 3 cut(s) 532, 699, 855
Cac8I GCNNGC 3 cut(s) 20, 506, 650
CfoI GCGC 3 cut(s) 20, 22, 156
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 3 cut(s) 201, 380, 555
CseI GACGC 2 cut(s) 130, 924
Csp6I GTAC 3 cut(s) 307, 487, 514
CviQI GTAC 3 cut(s) 307, 487, 514
DdeI CTNAG 1 cut(s) 714
DpnI GATC 2 cut(s) 59, 900
DpnII GATC 2 cut(s) 57, 898
Eam1104I CTCTTC 2 cut(s) 136, 252
EarI CTCTTC 2 cut(s) 136, 252
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO109I RGGNCCY 2 cut(s) 380, 555
EcoO65I GGTNACC 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 278, 568, 612
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 415
FaiI YATR 8 cut(s) 221, 429, 456, 491, 662, 732, 738, 740
FauI CCCGC 1 cut(s) 78
FauNDI CATATG 1 cut(s) 738
Fnu4HI GCNGC 3 cut(s) 125, 182, 604
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 125, 182, 604
FspBI CTAG 1 cut(s) 95
GlaI GCGC 3 cut(s) 19, 21, 155
GluI GCNGC 3 cut(s) 125, 182, 604
GsaI CCCAGC 1 cut(s) 562
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 5 cut(s) 203, 381, 556, 568, 854
HapII CCGG 1 cut(s) 40
HgaI GACGC 2 cut(s) 130, 924
HhaI GCGC 3 cut(s) 20, 22, 156
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 3 cut(s) 18, 20, 154
HinP1I GCGC 3 cut(s) 18, 20, 154
HpaII CCGG 1 cut(s) 40
HphI GGTGA 5 cut(s) 79, 235, 404, 475, 683
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 78, 81
HpyAV CCTTC 5 cut(s) 22, 247, 405, 435, 818
HpyCH4III ACNGT 3 cut(s) 527, 694, 809
HpyCH4IV ACGT 3 cut(s) 33, 79, 512
HpyCH4V TGCA 6 cut(s) 191, 354, 508, 530, 648, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 3 cut(s) 33, 79, 512
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 3 cut(s) 18, 20, 154
Kzo9I GATC 2 cut(s) 57, 898
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 2 cut(s) 193, 590
LweI GCATC 1 cut(s) 610
MaeI CTAG 1 cut(s) 95
MaeII ACGT 3 cut(s) 33, 79, 512
MaeIII GTNAC 3 cut(s) 118, 580, 671
MalI GATC 2 cut(s) 59, 900
MboI GATC 2 cut(s) 57, 898
MboII GAAGA 4 cut(s) 123, 269, 790, 924
MhlI GDGCHC 2 cut(s) 87, 395
MluCI AATT 1 cut(s) 52
MlyI GAGTC 4 cut(s) 265, 668, 706, 915
MmeI TCCRAC 2 cut(s) 363, 702
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 3 cut(s) 280, 570, 614
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 3 cut(s) 280, 570, 614
MvnI CGCG 2 cut(s) 20, 73
MwoI GCNNNNNNNGC 1 cut(s) 609
NdeI CATATG 1 cut(s) 738
NdeII GATC 2 cut(s) 57, 898
NlaIV GGNNCC 2 cut(s) 202, 557
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 118, 671
PauI GCGCGC 1 cut(s) 18
PceI AGGCCT 1 cut(s) 568
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 8 cut(s) 98, 325, 335, 406, 478, 721, 752, 761
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 3 cut(s) 126, 183, 605
Ple19I CGATCG 1 cut(s) 60
PleI GAGTC 4 cut(s) 265, 668, 706, 915
PpsI GAGTC 4 cut(s) 265, 668, 706, 915
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 3 cut(s) 278, 568, 612
PspEI GGTNACC 1 cut(s) 580
PspFI CCCAGC 1 cut(s) 558
PspGI CCWGG 3 cut(s) 278, 568, 612
PspN4I GGNNCC 2 cut(s) 202, 557
PspPI GGNCC 3 cut(s) 201, 380, 555
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PteI GCGCGC 1 cut(s) 18
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 3 cut(s) 308, 488, 515
RsaNI GTAC 3 cut(s) 307, 487, 514
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 3 cut(s) 125, 182, 604
Sau3AI GATC 2 cut(s) 57, 898
Sau96I GGNCC 3 cut(s) 201, 380, 555
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 4 cut(s) 265, 668, 706, 915
ScrFI CCNGG 3 cut(s) 280, 570, 614
SduI GDGCHC 2 cut(s) 87, 395
SfaNI GCATC 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 426
Sse9I AATT 1 cut(s) 52
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 3 cut(s) 71, 90, 125
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 87
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 3 cut(s) 278, 568, 612
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 527, 694, 809
TaiI ACGT 3 cut(s) 36, 82, 515
TaqI TCGA 5 cut(s) 56, 230, 244, 323, 618
TaqII GACCGA 1 cut(s) 94
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 8 cut(s) 98, 325, 335, 406, 478, 721, 752, 761
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 532, 699, 862
TseFI GTSAC 2 cut(s) 118, 671
TseI GCWGC 2 cut(s) 181, 603
Tsp45I GTSAC 2 cut(s) 118, 671
TspDTI ATGAA 6 cut(s) 90, 317, 398, 675, 734, 774
TspRI CASTG 3 cut(s) 532, 699, 862
Van91I CCANNNNNTGG 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.