Rorug07G0169600
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000697
Physical Location & Seq
Forward (+)
13705148 .. 13709393
4246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0169600.1

Sequence Viewer

Length: 795 bp
ATGGGTATGGGAACAAGCACCTTTGTTATCAGATGGATCAACTTTCTCACCATGCTTTTAGCAATTGCTGTGGTAGTCTTCGGAGTATGGATGAGCACTCATCATGATGGCTGTCGGAAATCCCTCACCCTCCCTGTTTTAGCCATTGGTGCTGTCATTTTCTTAGTATCTATAATTGGGTTCTTGGGCGCGCTGAAAAGAAGTTCCATACTGTTATGGATTTATTTGATTCTCCTGTGCTTCATATTGGTGGGAATCCTGGTGTTCACAGTATTAGCGTTCATTGTCACAAATAATGGTTCTGGTCATAGCGTCGCTGACCTGAGGTTCAAGGAGTATCAACTTCAGGATTACAGTTCATGGTTTCTAAAAGAATTGAACAATACCCATAACTGGAAGCACTTAAAGGGGTGTCTTGTGAAATCAGATGATTGCAATAACCTATCAAAGAAGTATAAGACTCTCAAGAAATTCAAATTGGCAAAGCTGACCCCTATTGAAGCTGGTTGCTGTCGGCCACCGTCTGAATGCGGTTATCCTGCTGTTAATGCCTCATACTATGATTTGAGCTTTCATCCAGTTAGTTCAAACAAGGACTGCAAACTTTACAGAAATGCTCGGGACACCAAGTGCTATAATTGTGATTCCTGCAAGGCTGGAGTTGCACAATACATGAAAACTGAGTGGAGAGTGGTTGCAATTTTCAATGTTGCTCTATTTGTTGTTTTGTCTCTGATATACTTTGTGGGCTGTTGTGCGAGACGAAATGCTGCAAGAGACCGTTCTAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

264

Amino Acids

29.73

Weight (kDa)

9.43

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 253 2.6e-35 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 531
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 6 cut(s) 331, 379, 475, 500, 588, 706
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 487, 503, 570
AluI AGCT 3 cut(s) 487, 503, 570
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 735, 754, 771
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 2 cut(s) 191, 193
AsuHPI GGTGA 2 cut(s) 40, 118
AvaI CYCGRG 1 cut(s) 618
AxyI CCTNAGG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 27, 101
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 735, 754, 771
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 618
BmrFI CCNGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 771
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 398, 578
Bse21I CCTNAGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 96, 574
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 314, 672
BseNI ACTGG 2 cut(s) 398, 578
BsePI GCGCGC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 618
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 3 cut(s) 735, 754, 771
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 1 cut(s) 517
Bso31I GGTCTC 1 cut(s) 771
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 531
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 2 cut(s) 315, 673
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 103
BspPI GGATC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 771
BsrI ACTGG 2 cut(s) 398, 578
BssHII GCGCGC 1 cut(s) 189
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 5 cut(s) 213, 271, 356, 522, 782
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 163, 323, 681
BstF5I GGATG 2 cut(s) 96, 574
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 191, 193
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 3 cut(s) 735, 754, 771
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 149, 548, 662
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 96, 574
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 191, 193
CseI GACGC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 52, 104, 360, 673
CviJI RGCY 8 cut(s) 111, 143, 487, 503, 517, 570, 656, 750
CviKI_1 RGCY 8 cut(s) 111, 143, 487, 503, 517, 570, 656, 750
DdeI CTNAG 3 cut(s) 163, 323, 681
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 771
Eco57I CTGAAG 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 4 cut(s) 55, 107, 363, 676
FaqI GGGAC 1 cut(s) 635
FatI CATG 4 cut(s) 51, 103, 359, 672
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 2 cut(s) 103, 561
Fsp4HI GCNGC 1 cut(s) 771
GlaI GCGC 2 cut(s) 190, 192
GluI GCNGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 517
HgaI GACGC 1 cut(s) 301
HhaI GCGC 2 cut(s) 191, 193
Hin1II CATG 4 cut(s) 55, 107, 363, 676
Hin6I GCGC 2 cut(s) 189, 191
HinP1I GCGC 2 cut(s) 189, 191
HinfI GANTC 4 cut(s) 229, 255, 460, 644
HphI GGTGA 2 cut(s) 40, 118
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 6 cut(s) 32, 83, 117, 427, 526, 735
Hpy188III TCNNGA 4 cut(s) 104, 347, 466, 620
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 317
HpyCH4III ACNGT 5 cut(s) 213, 271, 356, 522, 782
HpyCH4V TGCA 6 cut(s) 435, 600, 651, 665, 698, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 548, 662
HpyF3I CTNAG 3 cut(s) 163, 323, 681
Hsp92II CATG 4 cut(s) 55, 107, 363, 676
HspAI GCGC 2 cut(s) 189, 191
Kzo9I GATC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 757
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 70
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 134, 140, 318, 562
MseI TTAA 3 cut(s) 404, 546, 793
MslI CAYNNNNRTG 2 cut(s) 105, 248
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 149, 548, 662
NdeII GATC 1 cut(s) 36
NlaIII CATG 4 cut(s) 55, 107, 363, 676
NmuCI GTSAC 1 cut(s) 286
PagI TCATGA 1 cut(s) 103
PauI GCGCGC 1 cut(s) 189
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 229, 255, 644
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PteI GCGCGC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 105, 248
SaqAI TTAA 3 cut(s) 404, 546, 793
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 98
SetI ASST 7 cut(s) 23, 324, 329, 444, 489, 505, 572
SmiMI CAYNNNNRTG 2 cut(s) 105, 248
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
SsiI CCGC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 5 cut(s) 213, 271, 356, 522, 782
TasI AATT 7 cut(s) 63, 174, 374, 470, 476, 637, 699
TfiI GAWTC 3 cut(s) 229, 255, 644
Tru1I TTAA 3 cut(s) 404, 546, 793
Tru9I TTAA 3 cut(s) 404, 546, 793
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 5 cut(s) 232, 271, 348, 563, 689
XapI RAATTY 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.