Prupe.2G004900_v2.0.a1

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000697
Physical Location & Seq
Forward (+)
480125 .. 480573
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G004900.1

Sequence Viewer

Length: 372 bp
ATGCTAAGCAAGGCAACTGTAGAAACCAAAATACTCCCCAAGATTAATGAAAAACTTAGGTGTCACAAAACCTATTCTCAATACCAGAGTCAGTTGAAGTACTTTAAAAGAGAATACCAAACTTCTCCATCACAGAGGATATTTGGTATATTTAAGTCACGATTTACAATTTTCAAGTCTGCACCTCCATTCCTATATGCGACACAAACAGAGATAGTGTTAGCTTGTGCAGGACTACACAATTTTCTTCGAAAAGAGTGTAGATCTGATGAATTTCCTGTTGAATTGAAGGATGAATCTTCTTCATCTTCATCGTTACCAGTTAATGAATGGGATCCTGAACTAGTTTTCCAAACACAAGAACAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

124

Amino Acids

14.39

Weight (kDa)

8.77

Isoelectric Point (pI)

69.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 329, 342
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 4 cut(s) 97, 175, 284, 289
AhlI ACTAGT 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 2 cut(s) 329, 342
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 250
BamHI GGATCC 1 cut(s) 334
BccI CCATC 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 5
BmcAI AGTACT 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 320
BsgI GTGCAG 2 cut(s) 165, 249
Bsp119I TTCGAA 1 cut(s) 250
Bsp143I GATC 2 cut(s) 263, 334
Bsp1720I GCTNAGC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 329, 342
BspT104I TTCGAA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 320
BssMI GATC 2 cut(s) 263, 334
Bst4CI ACNGT 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 5, 56
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 266, 337
BstMBI GATC 2 cut(s) 263, 334
BstSFI CTRYAG 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 263, 334
BstYI RGATCY 2 cut(s) 263, 334
BtsCI GGATG 1 cut(s) 298
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 1 cut(s) 224
CviKI_1 RGCY 1 cut(s) 224
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 5, 56
DpnI GATC 2 cut(s) 265, 336
DpnII GATC 2 cut(s) 263, 334
DraI TTTAAA 1 cut(s) 106
FaiI YATR 3 cut(s) 149, 196, 198
FokI GGATG 1 cut(s) 305
FspBI CTAG 1 cut(s) 344
HinfI GANTC 2 cut(s) 88, 296
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 159, 338
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 182, 230
HpyF3I CTNAG 2 cut(s) 5, 56
Kzo9I GATC 2 cut(s) 263, 334
LpnPI CCDG 5 cut(s) 98, 216, 291, 333, 351
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 62, 156, 315
MalI GATC 2 cut(s) 265, 336
MboI GATC 2 cut(s) 263, 334
MboII GAAGA 4 cut(s) 239, 291, 294, 300
MflI RGATCY 2 cut(s) 263, 334
MluCI AATT 4 cut(s) 168, 241, 272, 284
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 2 cut(s) 129, 195
MseI TTAA 4 cut(s) 45, 105, 153, 324
NdeII GATC 2 cut(s) 263, 334
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 2 cut(s) 62, 156
NspV TTCGAA 1 cut(s) 250
PfeI GAWTC 1 cut(s) 296
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 2 cut(s) 263, 334
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 4 cut(s) 45, 105, 153, 324
Sau3AI GATC 2 cut(s) 263, 334
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 1 cut(s) 97
SetI ASST 4 cut(s) 62, 74, 187, 226
SfcI CTRYAG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 4 cut(s) 168, 241, 272, 284
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 250
TasI AATT 4 cut(s) 168, 241, 272, 284
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 4 cut(s) 45, 105, 153, 324
Tru9I TTAA 4 cut(s) 45, 105, 153, 324
TseFI GTSAC 2 cut(s) 62, 156
Tsp45I GTSAC 2 cut(s) 62, 156
TspDTI ATGAA 6 cut(s) 63, 285, 294, 300, 309, 342
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.