Rmu_sc0002848.1_g000001
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002848.1
OG0000697
Physical Location & Seq
Reverse (-)
1 .. 2855
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002848.1_g000001.1.cds

Sequence Viewer

Length: 558 bp
atggatgtcatgaatgaagatgatatggatgatgaagaattttttgaagctataaagggtatcttgatggcaatacaagcaattatccatctggattgtataggagcaattgatgggacacatattccagcaatggtgaagggacctgagataagcgcataccgaaaccgatatggaaaaacatcacaaaatgtattggctgctactaactttgacttggaattcatttatgtgctcagtgggtgggaaggttcagctcatgattcaagagtactaaatgatgcattgacaaggagaaatgggcttaagttacctccaggtaaatttttattggtggatgttggatttgcaaatagacatggtttcttagcacctattagaggcgtccgctatcatctcaaagagttcagtggtcagggtcaccaccctgaaaatgcgccccagttggaaggtctagggacaatcctcaaggaggatacgagtagttccttgaggtttcatgaagtccaaaaagtttcccaaaacacagatccagaggttttggtcgctaagaaacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

5.57

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 38, 221, 323
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 380, 472
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 47, 267
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 50, 257
AluI AGCT 2 cut(s) 50, 257
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 1 cut(s) 524
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 3 cut(s) 38, 221, 323
AspLEI GCGC 2 cut(s) 158, 439
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 148, 413
AvaII GGWCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 61, 96, 107
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 1 cut(s) 469
BfaI CTAG 1 cut(s) 455
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 318
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 452, 511
BsaHI GRCGYC 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 472
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 3 cut(s) 10, 34, 343
BseLI CCNNNNNNNGG 2 cut(s) 380, 472
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 138, 250
BseNI ACTGG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 3 cut(s) 130, 156, 472
BslI CCNNNNNNNGG 2 cut(s) 380, 472
BsmFI GGGAC 3 cut(s) 130, 156, 472
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 139, 249
BspHI TCATGA 3 cut(s) 9, 259, 499
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 442
BssMI GATC 1 cut(s) 529
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 384
BstAFI CTTAAG 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 147, 236, 367, 549
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 2 cut(s) 378, 470
BstF5I GGATG 3 cut(s) 10, 34, 343
BstHHI GCGC 2 cut(s) 158, 439
BstKTI GATC 1 cut(s) 532
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 469
BtsCI GGATG 3 cut(s) 10, 34, 343
BtsIMutI CAGTG 2 cut(s) 244, 415
CciI TCATGA 3 cut(s) 9, 259, 499
CfoI GCGC 2 cut(s) 158, 439
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 272
CviAII CATG 4 cut(s) 10, 260, 359, 500
CviJI RGCY 4 cut(s) 50, 200, 257, 304
CviKI_1 RGCY 4 cut(s) 50, 200, 257, 304
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 4 cut(s) 147, 236, 367, 549
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 419
EcoNI CCTNNNNNAGG 2 cut(s) 378, 470
EcoO109I RGGNCCY 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 4 cut(s) 13, 263, 362, 503
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 3 cut(s) 130, 156, 472
FatI CATG 4 cut(s) 9, 259, 358, 499
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 17, 41, 350
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 455
GlaI GCGC 2 cut(s) 157, 438
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 300
HgaI GACGC 1 cut(s) 373
HhaI GCGC 2 cut(s) 158, 439
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 4 cut(s) 13, 263, 362, 503
Hin6I GCGC 2 cut(s) 156, 437
HinP1I GCGC 2 cut(s) 156, 437
HinfI GANTC 1 cut(s) 263
HphI GGTGA 2 cut(s) 148, 413
Hpy188III TCNNGA 7 cut(s) 10, 64, 92, 260, 267, 500, 533
HpyAV CCTTC 3 cut(s) 133, 242, 443
HpyCH4V TGCA 2 cut(s) 284, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 4 cut(s) 147, 236, 367, 549
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 4 cut(s) 13, 263, 362, 503
HspAI GCGC 2 cut(s) 156, 437
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 9 cut(s) 77, 141, 159, 303, 330, 401, 441, 455, 546
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 309, 419
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 2 cut(s) 29, 47
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 5 cut(s) 38, 81, 108, 221, 323
MmeI TCCRAC 2 cut(s) 322, 426
MnlI CCTC 6 cut(s) 324, 374, 466, 476, 486, 529
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 529
NlaIII CATG 4 cut(s) 13, 263, 362, 503
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 3 cut(s) 9, 259, 499
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 143
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 3 cut(s) 305, 467, 490
SmoI CTYRAG 3 cut(s) 305, 467, 490
Sse9I AATT 5 cut(s) 38, 81, 108, 221, 323
SsiI CCGC 1 cut(s) 388
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 316
TasI AATT 5 cut(s) 38, 81, 108, 221, 323
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 244, 415
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 26, 30, 48, 214, 488, 516
TspRI CASTG 2 cut(s) 244, 415
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 2 cut(s) 378, 470
XapI RAATTY 3 cut(s) 38, 221, 323
XspI CTAG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.