Rmu_ssc0000255.1_g000020
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000255.1
OG0000697
Physical Location & Seq
Forward (+)
140696 .. 141964
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000255.1_g000020.1.cds

Sequence Viewer

Length: 858 bp
atgattgtggagcataatgatcaatattgtaatgttcgtcaaaagtttggtcattcacatttcgctaccagtcaaaacttcaacaaagttttgaaggccttgaacactatagtaccacaaatgatggtcaaacctggaggtgtgccttataaaattagggaaagtacaaggttttacccttaccttaaggattgcattggtgctattgatagaacccatattccagccatggtaaaaggtcgagaagtaagcagctaccataatcgtcatggtattcaatctcaaaatgttttggctgcttgcaacttcgatttggaattcatatacgcgcttactccattatgcggtgtccgatatcatctgaaagattttagtggtcaaggtcgccaccccagaaatacaagtgagttattcaatcttcgccatgcatcattgaggaatgtgattgagaagatatttggtatttttaaatcgcggttcacaattttcaaaattacacctccattctcatttaagacacaaccggagttagtgttagcttgtgctggactacataaccttcttcgcaaagaatgtcgctctgatgaatttcccattaaaccagaagatgaccagtcttcatcatatctagacatggaagatgaaaatcttgaactactttctcaaagccaacaacaacaaagagtggaagctaatgcttggagaattagaattgctgatgctatgtggaatgataggccgcggaatgatgataatggaaatcaagaggataacaatgaggatcaagacataaatgatgagaatcaagaggtttacgatgataatgaggttggaatggagaagtatgcatcattataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

285

Amino Acids

33.05

Weight (kDa)

5.94

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 150, 856
AccII CGCG 3 cut(s) 329, 475, 742
AciI CCGC 4 cut(s) 345, 475, 740, 742
AclWI GGATC 1 cut(s) 789
AcsI RAATTY 2 cut(s) 317, 587
AfaI GTAC 2 cut(s) 114, 166
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 7 cut(s) 82, 94, 103, 278, 415, 490, 653
AjnI CCWGG 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 3 cut(s) 255, 539, 692
AluI AGCT 3 cut(s) 255, 539, 692
AlwI GGATC 1 cut(s) 789
AoxI GGCC 2 cut(s) 96, 737
ApeKI GCWGC 2 cut(s) 252, 296
ApoI RAATTY 2 cut(s) 317, 587
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspLEI GCGC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 264, 283
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 19
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 3 cut(s) 253, 297, 740
BlsI GCNGC 3 cut(s) 254, 298, 741
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 437, 709
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 156
BsaBI GATNNNNATC 2 cut(s) 645, 801
BsaJI CCNNGG 2 cut(s) 228, 740
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 69, 613
Bse8I GATNNNNATC 2 cut(s) 645, 801
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 228, 740
BseJI GATNNNNATC 2 cut(s) 645, 801
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 69, 613
BseXI GCAGC 2 cut(s) 264, 283
Bsh1236I CGCG 3 cut(s) 329, 475, 742
BshFI GGCC 2 cut(s) 98, 739
BsiSI CCGG 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 344
BsnI GGCC 2 cut(s) 98, 739
Bsp143I GATC 2 cut(s) 19, 781
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 4 cut(s) 345, 475, 740, 742
BspANI GGCC 2 cut(s) 98, 739
BspFNI CGCG 3 cut(s) 329, 475, 742
BspPI GGATC 1 cut(s) 789
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 69, 613
BssECI CCNNGG 2 cut(s) 228, 740
BssMI GATC 2 cut(s) 19, 781
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 301
BstDSI CCRYGG 2 cut(s) 228, 740
BstFNI CGCG 3 cut(s) 329, 475, 742
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 22, 784
BstMBI GATC 2 cut(s) 19, 781
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 3 cut(s) 329, 475, 742
BstV1I GCAGC 2 cut(s) 264, 283
BstV2I GAAGAC 1 cut(s) 609
BsuRI GGCC 2 cut(s) 98, 739
BtgI CCRYGG 2 cut(s) 228, 740
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 331
Cfr42I CCGCGG 1 cut(s) 743
Csp6I GTAC 2 cut(s) 113, 165
CviAII CATG 4 cut(s) 229, 269, 425, 634
CviJI RGCY 8 cut(s) 98, 227, 255, 296, 539, 669, 692, 739
CviKI_1 RGCY 8 cut(s) 98, 227, 255, 296, 539, 669, 692, 739
CviQI GTAC 2 cut(s) 113, 165
DpnI GATC 2 cut(s) 21, 783
DpnII GATC 2 cut(s) 19, 781
DraI TTTAAA 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 98
Eco32I GATATC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 2 cut(s) 430, 850
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 4 cut(s) 232, 272, 428, 637
FatI CATG 4 cut(s) 228, 268, 424, 633
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 253, 297, 740
Fsp4HI GCNGC 3 cut(s) 253, 297, 740
FspBI CTAG 1 cut(s) 629
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 253, 297, 740
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 98, 739
HapII CCGG 1 cut(s) 524
HhaI GCGC 1 cut(s) 331
Hin1II CATG 4 cut(s) 232, 272, 428, 637
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 1 cut(s) 802
HpaII CCGG 1 cut(s) 524
Hpy166II GTNNAC 2 cut(s) 480, 814
Hpy188I TCNGA 3 cut(s) 353, 363, 583
Hpy188III TCNNGA 6 cut(s) 242, 629, 650, 764, 785, 806
Hpy8I GTNNAC 2 cut(s) 480, 814
HpyAV CCTTC 2 cut(s) 88, 569
HpyCH4V TGCA 4 cut(s) 195, 303, 428, 848
Hsp92II CATG 4 cut(s) 232, 272, 428, 637
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 19
KspI CCGCGG 1 cut(s) 743
Kzo9I GATC 2 cut(s) 19, 781
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 82, 120, 147, 237, 406, 531, 537, 615, 626
Lsp1109I GCAGC 2 cut(s) 264, 283
LweI GCATC 2 cut(s) 437, 709
MaeI CTAG 1 cut(s) 629
MalI GATC 2 cut(s) 21, 783
MboI GATC 2 cut(s) 19, 781
MboII GAAGA 6 cut(s) 410, 463, 554, 609, 617, 650
MluCI AATT 7 cut(s) 153, 317, 483, 492, 587, 705, 711
MmeI TCCRAC 1 cut(s) 811
MnlI CCTC 7 cut(s) 131, 429, 510, 760, 772, 802, 820
Mph1103I ATGCAT 2 cut(s) 430, 850
MseI TTAA 4 cut(s) 186, 468, 513, 597
MspA1I CMGCKG 1 cut(s) 742
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 3 cut(s) 329, 475, 742
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 19, 781
NlaIII CATG 4 cut(s) 232, 272, 428, 637
NsiI ATGCAT 2 cut(s) 430, 850
PceI AGGCCT 1 cut(s) 98
PfeI GAWTC 1 cut(s) 802
PkrI GCNGC 3 cut(s) 254, 298, 741
PsiI TTATAA 2 cut(s) 150, 856
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
RsaI GTAC 2 cut(s) 114, 166
RsaNI GTAC 2 cut(s) 113, 165
SacII CCGCGG 1 cut(s) 743
SaqAI TTAA 4 cut(s) 186, 468, 513, 597
SatI GCNGC 3 cut(s) 253, 297, 740
Sau3AI GATC 2 cut(s) 19, 781
ScrFI CCNGG 1 cut(s) 135
SfaNI GCATC 2 cut(s) 437, 709
SfcI CTRYAG 1 cut(s) 108
Sfr303I CCGCGG 1 cut(s) 743
SgrBI CCGCGG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 7 cut(s) 153, 317, 483, 492, 587, 705, 711
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 4 cut(s) 345, 475, 740, 742
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 629
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 228
TaqI TCGA 2 cut(s) 241, 309
TasI AATT 7 cut(s) 153, 317, 483, 492, 587, 705, 711
TatI WGTACW 1 cut(s) 164
TauI GCSGC 1 cut(s) 742
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 4 cut(s) 186, 468, 513, 597
Tru9I TTAA 4 cut(s) 186, 468, 513, 597
TseI GCWGC 2 cut(s) 252, 296
TspDTI ATGAA 4 cut(s) 310, 600, 609, 657
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 317, 587
XbaI TCTAGA 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XspI CTAG 1 cut(s) 629
Zsp2I ATGCAT 2 cut(s) 430, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.