Rmu_sc0016181.1_g000003
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016181.1
OG0000697
Physical Location & Seq
Reverse (-)
18752 .. 23604
4853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016181.1_g000003.1.cds

Sequence Viewer

Length: 837 bp
atgagttcgaaatcactgccatcaagaagagatggcgctgctcttattactttctcatggctgcctagatataatttctccttcattgaaggaacaaagtctggattaaccctacaccattccattgaatattgcaccgggttgccacacaacaaacccgcccagccgacgtcggaacaaggatttccgaccgggtccgaaatcctcaaacggcaccgccttgctgcacttcctccaccacgaatcgccgcaagaggctgccacagagacgaccgcacgagagaggcgaatcgctctgtgcaggtttcaaggttaggggtcgccggatgtcgccgcacttcaccggaaaagccaggtcgggtcagtctgattatttcgtttctgaaggtgcagccgagagagaagagagaggaagtgaattgggcttccggaaagggaaatgatgaaaatagaaatgcaagtgagttgttcaatcttcgccacgcatcattgaggaatgtgattgagaggacatttggtatctttaaatcgtggttcataattttcaaaatcgcacctccattcccatttgagacacaagcggagttagtgttagcttgtgttggactacataactttcttcgcaaaaaatgtcgctccgatgaatttcccgttgaaccagaagatgatcacattgctgatgctatgtggaatgacaggccgcgaaatgatgataatggaaatcaagaggataacaatgacaatgacaatgagaataatgaagaacacataaatgatgagaatcaagaggtttacgatgataatgatgttggaatggaggagtatgcatcattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

278

Amino Acids

31.73

Weight (kDa)

5.89

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 213
AccII CGCG 1 cut(s) 703
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 7 cut(s) 159, 217, 249, 274, 334, 581, 701
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 170
AgsI TTSAA 6 cut(s) 89, 128, 309, 472, 547, 656
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 1 cut(s) 596
AluI AGCT 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 261, 566
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 1 cut(s) 698
ApeKI GCWGC 5 cut(s) 38, 61, 224, 258, 391
ApoI RAATTY 1 cut(s) 644
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 2 cut(s) 139, 193
AsuHPI GGTGA 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 213
BauI CACGAG 1 cut(s) 277
BbvI GCAGC 5 cut(s) 25, 48, 211, 245, 403
BccI CCATC 2 cut(s) 26, 28
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 2 cut(s) 139, 193
BcoDI GTCTC 2 cut(s) 261, 566
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 8 cut(s) 39, 62, 225, 249, 259, 334, 392, 701
BlsI GCNGC 8 cut(s) 40, 63, 226, 250, 260, 335, 393, 702
Bme1390I CCNGG 3 cut(s) 139, 193, 354
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 196, 215
BmrFI CCNGG 3 cut(s) 139, 193, 354
BmsI GCATC 2 cut(s) 494, 670
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 139, 193
BsaBI GATNNNNATC 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 170
BsaWI WCCGGW 2 cut(s) 343, 428
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bse3DI GCAATG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 428
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 780
BseMI GCAATG 1 cut(s) 672
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 5 cut(s) 25, 48, 211, 245, 403
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 3 cut(s) 210, 320, 410
Bsh1236I CGCG 1 cut(s) 703
Bsh1285I CGRYCG 2 cut(s) 192, 274
BshFI GGCC 1 cut(s) 700
BshNI GGYRCC 1 cut(s) 213
BsiEI CGRYCG 2 cut(s) 192, 274
BsiSI CCGG 5 cut(s) 138, 192, 324, 344, 429
BsmAI GTCTC 2 cut(s) 261, 566
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 1 cut(s) 667
BspACI CCGC 7 cut(s) 159, 217, 249, 274, 334, 581, 701
BspANI GGCC 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 196, 215
BspMI ACCTGC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 672
BssMI GATC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 22, 398
BstACI GRCGYC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 8
BstF5I GGATG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 703
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 670
BstMAI GTCTC 2 cut(s) 261, 566
BstMBI GATC 1 cut(s) 667
BstMCI CGRYCG 2 cut(s) 192, 274
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 137, 191, 352
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 5 cut(s) 25, 48, 211, 245, 403
BsuRI GGCC 1 cut(s) 700
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 1 cut(s) 57
CviJI RGCY 8 cut(s) 61, 166, 258, 352, 394, 425, 596, 700
CviKI_1 RGCY 8 cut(s) 61, 166, 258, 352, 394, 425, 596, 700
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
DraI TTTAAA 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 22, 398
EarI CTCTTC 2 cut(s) 22, 398
Eco47I GGWCC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 1 cut(s) 60
FaiI YATR 7 cut(s) 58, 72, 539, 612, 686, 770, 825
FatI CATG 1 cut(s) 56
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 8 cut(s) 39, 62, 225, 249, 259, 334, 392, 701
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 8 cut(s) 39, 62, 225, 249, 259, 334, 392, 701
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 37
GluI GCNGC 8 cut(s) 39, 62, 225, 249, 259, 334, 392, 701
GsaI CCCAGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 1 cut(s) 700
HapII CCGG 5 cut(s) 138, 192, 324, 344, 429
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 3 cut(s) 243, 289, 781
HpaII CCGG 5 cut(s) 138, 192, 324, 344, 429
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 6 cut(s) 175, 189, 199, 369, 384, 640
Hpy188III TCNNGA 5 cut(s) 24, 102, 429, 725, 785
Hpy8I GTNNAC 1 cut(s) 793
Hpy99I CGWCG 2 cut(s) 172, 175
HpyAV CCTTC 3 cut(s) 83, 91, 379
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 6 cut(s) 135, 227, 301, 391, 458, 827
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 36
Kpn2I TCCGGA 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 5 cut(s) 25, 48, 211, 245, 403
LweI GCATC 2 cut(s) 494, 670
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 170
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 6 cut(s) 39, 415, 467, 611, 674, 773
MluCI AATT 4 cut(s) 73, 418, 540, 644
MmeI TCCRAC 4 cut(s) 153, 212, 583, 790
Mph1103I ATGCAT 1 cut(s) 829
MroI TCCGGA 1 cut(s) 428
MseI TTAA 2 cut(s) 107, 525
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 5 cut(s) 138, 192, 324, 344, 429
MspR9I CCNGG 3 cut(s) 139, 193, 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 703
NciI CCSGG 2 cut(s) 139, 193
NdeII GATC 1 cut(s) 667
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 196, 215
NmeAIII GCCGAG 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 829
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PfeI GAWTC 3 cut(s) 243, 289, 781
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 8 cut(s) 40, 63, 226, 250, 260, 335, 393, 702
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 196, 215
PspPI GGNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 2 cut(s) 107, 525
SatI GCNGC 8 cut(s) 39, 62, 225, 249, 259, 334, 392, 701
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 3 cut(s) 139, 193, 354
SetI ASST 8 cut(s) 173, 306, 314, 358, 390, 559, 598, 792
SfaNI GCATC 2 cut(s) 494, 670
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 771
Sse9I AATT 4 cut(s) 73, 418, 540, 644
SsiI CCGC 7 cut(s) 159, 217, 249, 274, 334, 581, 701
SspI AATATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 137, 191, 352
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 73, 418, 540, 644
TauI GCSGC 3 cut(s) 251, 336, 703
TfiI GAWTC 3 cut(s) 243, 289, 781
Tru1I TTAA 2 cut(s) 107, 525
Tru9I TTAA 2 cut(s) 107, 525
TscAI CASTG 1 cut(s) 21
TseI GCWGC 5 cut(s) 38, 61, 224, 258, 391
TspDTI ATGAA 5 cut(s) 73, 459, 526, 657, 774
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 644
XspI CTAG 1 cut(s) 66
ZraI GACGTC 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.