Rroxscaffold_7G00190250
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000697
Physical Location & Seq
Reverse (-)
30305150 .. 30306653
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190250.1

Sequence Viewer

Length: 366 bp
ATGATTAGGCTCGACATATTGAGCGTTCGCTCAAACGACGACCAGTTACCAGAATGTCGGTCCGATGAATTTCCCGTTGAACCAGAAGATGATCAGTCTTCATCATATCTAGACATGGAAGATGAAAATCTTGAACTACTTTCTCAAAGCCAACAACAACAAAGAGCGGAAGCTAATGCTTGGAGAATTAGCATTGCCGATGCTATGTGGAATGATAGGCCGCGGAATGATGATAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGAGAATAATGAGGAACACATAAATGATGAGAATCGGGAGGTTTACGATGATAATGAGGTTGGAATGGAGGAGTATGCATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

121

Amino Acids

14.23

Weight (kDa)

4.05

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 167
AccII CGCG 1 cut(s) 223
AciI CCGC 3 cut(s) 167, 221, 223
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 68
AgsI TTSAA 2 cut(s) 80, 134
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 60
AvaII GGWCC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 90
BclI TGATCA 1 cut(s) 91
BfaI CTAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 90
BsaBI GATNNNNATC 2 cut(s) 126, 309
BsaJI CCNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 2 cut(s) 126, 309
BseDI CCNNGG 1 cut(s) 221
BseJI GATNNNNATC 2 cut(s) 126, 309
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 220
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 91, 262
BspACI CCGC 3 cut(s) 167, 221, 223
BspANI GGCC 1 cut(s) 220
BspFNI CGCG 1 cut(s) 223
BspPI GGATC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 91, 262
BstDSI CCRYGG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 2 cut(s) 94, 265
BstMBI GATC 2 cut(s) 91, 262
BstUI CGCG 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 60
Cfr42I CCGCGG 1 cut(s) 224
CpoI CGGWCCG 1 cut(s) 60
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 10, 150, 173, 220
CviKI_1 RGCY 4 cut(s) 10, 150, 173, 220
DpnI GATC 2 cut(s) 93, 264
DpnII GATC 2 cut(s) 91, 262
Eco47I GGWCC 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 1 cut(s) 118
FaiI YATR 6 cut(s) 17, 106, 116, 206, 299, 354
FatI CATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 5 cut(s) 110, 131, 245, 266, 314
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 356
Hsp92II CATG 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 91
KspI CCGCGG 1 cut(s) 224
Kzo9I GATC 2 cut(s) 91, 262
LpnPI CCDG 3 cut(s) 56, 63, 96
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 93, 264
MbiI CCGCTC 1 cut(s) 167
MboI GATC 2 cut(s) 91, 262
MboII GAAGA 3 cut(s) 90, 98, 131
MluCI AATT 2 cut(s) 68, 186
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 241, 253, 283, 310, 328, 340
Mph1103I ATGCAT 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 223
MvnI CGCG 1 cut(s) 223
NdeII GATC 2 cut(s) 91, 262
NlaIII CATG 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 358
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 300
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SacII CCGCGG 1 cut(s) 224
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 91, 262
Sau96I GGNCC 1 cut(s) 60
SetI ASST 3 cut(s) 175, 321, 339
SfaNI GCATC 1 cut(s) 190
Sfr303I CCGCGG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 224
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 68, 186
SsiI CCGC 3 cut(s) 167, 221, 223
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 48
TasI AATT 2 cut(s) 68, 186
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 81, 90, 138
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.