Rmu_sc0007173.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007173.1
OG0000697
Physical Location & Seq
Forward (+)
7561 .. 7815
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007173.1_g000003.1.cds

Sequence Viewer

Length: 255 bp
atggaagatgagaatcttgaactactttctcaaagtcaacaacgacaaagagcggaggctaatgcttggaggcttactattgctgaagctatgtgggaggatagaccgcgaaatgatgatgataatggaagtcaagagaataacaatgatactcaagacaatgagaatgagaataatgaggaacatatggatgacggggaacaagaaggttatgatgataatgaagttggaatggatgagtatgcagctttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.84

Weight (kDa)

4.05

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 53, 107
AcuI CTGAAG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 2 cut(s) 89, 248
AluI AGCT 2 cut(s) 89, 248
ApeKI GCWGC 1 cut(s) 245
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 2 cut(s) 196, 241
BseJI GATNNNNATC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 109
BspACI CCGC 2 cut(s) 53, 107
BspFNI CGCG 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 53
BstF5I GGATG 2 cut(s) 196, 241
BstFNI CGCG 1 cut(s) 109
BstUI CGCG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 196, 241
CviJI RGCY 4 cut(s) 59, 73, 89, 248
CviKI_1 RGCY 4 cut(s) 59, 73, 89, 248
Eco57I CTGAAG 1 cut(s) 105
FaiI YATR 5 cut(s) 92, 186, 188, 213, 243
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 203, 248
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 17, 134, 155
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 53
MboII GAAGA 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 4 cut(s) 49, 63, 91, 172
MslI CAYNNNNRTG 1 cut(s) 189
MvnI CGCG 1 cut(s) 109
NdeI CATATG 1 cut(s) 186
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 189
SatI GCNGC 1 cut(s) 246
SetI ASST 3 cut(s) 91, 211, 250
SgeI CNNG 7 cut(s) 29, 78, 120, 146, 167, 208, 215
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SsiI CCGC 2 cut(s) 53, 107
TfiI GAWTC 1 cut(s) 13
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.