Rroxscaffold_5G00349500

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000697
Physical Location & Seq
Reverse (-)
22507860 .. 22517222
9363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349500.1

Sequence Viewer

Length: 300 bp
ATGATTGTGGGGCATAATGGTCGATATTGTAATGTTCATCAAAGGTTTGGTCGTTCACATTTCGCTACCAGTCAAAACTTCAACAAAGTTTTGAAGGCCTTGAACACTATAGCACCACAAATGATGGTCAAATCTGGAGGTGTGCCCTCTAAAATTAGGGAAAGTACAAGGCTTTACCTTTACTTTAAGCCTTCTCTCCGTGAATTTGTTCGTTTTGGATTTTGCAATAGGTTGGTGAATGAACTTGTGCAGCTACTTGGGCAAGGCATTCAAGTGGGGACCGATGTCCTCGATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.3

Weight (kDa)

10.43

Isoelectric Point (pI)

18.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 4 cut(s) 82, 94, 103, 272
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 269
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 292
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 69
BssMI GATC 1 cut(s) 292
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstPAI GACNNNNGTC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 4 cut(s) 98, 172, 190, 253
CviKI_1 RGCY 4 cut(s) 98, 172, 190, 253
CviQI GTAC 1 cut(s) 165
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 279
FaiI YATR 2 cut(s) 15, 110
FaqI GGGAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 98
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 88, 201
HpyCH4V TGCA 2 cut(s) 225, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 2 cut(s) 82, 120
Lsp1109I GCAGC 1 cut(s) 262
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 2 cut(s) 153, 203
MnlI CCTC 3 cut(s) 131, 157, 299
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 98
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 252
Ple19I CGATCG 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 279
PvuI CGATCG 1 cut(s) 295
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 279
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 47, 142, 180, 233, 255
SfcI CTRYAG 1 cut(s) 108
SgeI CNNG 9 cut(s) 81, 112, 147, 180, 212, 257, 269, 275, 284
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 2 cut(s) 153, 203
SseBI AGGCCT 1 cut(s) 98
StuI AGGCCT 1 cut(s) 98
TaqI TCGA 2 cut(s) 22, 291
TaqII GACCGA 1 cut(s) 296
TasI AATT 2 cut(s) 153, 203
TatI WGTACW 1 cut(s) 164
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 26, 255
TspGWI ACGGA 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.