Rmu_sc0005782.1_g000004
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005782.1
OG0000697
Physical Location & Seq
Forward (+)
11371 .. 12581
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005782.1_g000004.1.cds

Sequence Viewer

Length: 594 bp
atggcagatacaaatgaagatatggatgtcatgaatgaagatgatatggatgatgaagaattttttgaagctataaagggtaaatttttattggtggatgctggatttgcaaatagacgtgattttttagcacctattagaggcgtccgctatcatctcaaagagttcagtggtcagggtcgccaccctgaaaatgcgcgtgagttattcaatctttgtcatgcttccttgagaaacgtagttgagagaatatttggagtacttaaatcccgtttcacaatattcaagactacatctccattcccatttaagacacaagcggagctaatgttggcttgtgtaggacttcacaactttcttcataaggaatgtcgttctgatttatttcctgttgaaccagaggatgaagaatattctgaacatgaagaagatccggaagatgaattccaaacccaagaccaacaaagagaggaagctaatgattggagaatggagatagctaatcatatgtggagagatgcaagacctgcacctgatcctgaacccaatcctccacccgttgttgaaggcaacaatgtagcaaaacaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

4.64

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
AccII CGCG 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 2 cut(s) 148, 320
AclWI GGATC 2 cut(s) 425, 530
AcsI RAATTY 3 cut(s) 59, 83, 443
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 5 cut(s) 68, 211, 286, 395, 566
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 4 cut(s) 71, 325, 476, 500
AluI AGCT 4 cut(s) 71, 325, 476, 500
AlwI GGATC 2 cut(s) 425, 530
Aor13HI TCCGGA 1 cut(s) 433
ApoI RAATTY 3 cut(s) 59, 83, 443
AspLEI GCGC 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 535
BmcAI AGTACT 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 119
BmsI GCATC 2 cut(s) 88, 508
BpuEI CTTGAG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 433
BseGI GGATG 4 cut(s) 31, 55, 103, 409
BseLI CCNNNNNNNGG 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 2 cut(s) 430, 535
BspACI CCGC 2 cut(s) 148, 320
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 2 cut(s) 30, 590
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 2 cut(s) 425, 530
BssMI GATC 2 cut(s) 430, 535
BssNI GRCGYC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 527
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 31, 55, 103, 409
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 433, 538
BstMBI GATC 2 cut(s) 430, 535
BstMWI GCNNNNNNNGC 2 cut(s) 107, 527
BstUI CGCG 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 4 cut(s) 31, 55, 103, 409
BtsIMutI CAGTG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 535
CciI TCATGA 2 cut(s) 30, 590
CfoI GCGC 1 cut(s) 199
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 31, 221, 422, 591
CviJI RGCY 5 cut(s) 71, 325, 335, 476, 500
CviKI_1 RGCY 5 cut(s) 71, 325, 335, 476, 500
CviQI GTAC 1 cut(s) 260
DpnI GATC 2 cut(s) 432, 537
DpnII GATC 2 cut(s) 430, 535
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 443
FaeI CATG 4 cut(s) 34, 224, 425, 594
FatI CATG 4 cut(s) 30, 220, 421, 590
FauNDI CATATG 1 cut(s) 507
FokI GGATG 4 cut(s) 38, 62, 110, 416
GlaI GCGC 1 cut(s) 198
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 4 cut(s) 34, 224, 425, 594
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HpaII CCGG 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 379, 418
Hpy188III TCNNGA 5 cut(s) 31, 286, 434, 539, 591
HpyAV CCTTC 1 cut(s) 560
HpyCH4IV ACGT 2 cut(s) 118, 237
HpyCH4V TGCA 3 cut(s) 110, 521, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 527
HpySE526I ACGT 2 cut(s) 118, 237
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 4 cut(s) 34, 224, 425, 594
HspAI GCGC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 430, 535
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 9 cut(s) 87, 161, 201, 402, 411, 447, 540, 546, 552
LweI GCATC 2 cut(s) 88, 508
MaeII ACGT 2 cut(s) 118, 237
MalI GATC 2 cut(s) 432, 537
MboI GATC 2 cut(s) 430, 535
MboII GAAGA 8 cut(s) 29, 50, 68, 350, 419, 437, 440, 449
MflI RGATCY 1 cut(s) 430
MluCI AATT 3 cut(s) 59, 83, 443
MnlI CCTC 4 cut(s) 134, 394, 463, 561
MroI TCCGGA 1 cut(s) 433
MseI TTAA 2 cut(s) 264, 309
MspI CCGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 107, 527
NdeI CATATG 1 cut(s) 507
NdeII GATC 2 cut(s) 430, 535
NlaIII CATG 4 cut(s) 34, 224, 425, 594
PagI TCATGA 2 cut(s) 30, 590
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 264, 309
Sau3AI GATC 2 cut(s) 430, 535
ScaI AGTACT 1 cut(s) 261
SetI ASST 9 cut(s) 73, 121, 136, 240, 327, 478, 502, 529, 535
SfaNI GCATC 2 cut(s) 88, 508
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 59, 83, 443
SsiI CCGC 2 cut(s) 148, 320
SspI AATATT 3 cut(s) 252, 282, 413
TaiI ACGT 2 cut(s) 121, 240
TasI AATT 3 cut(s) 59, 83, 443
TatI WGTACW 1 cut(s) 259
Tru1I TTAA 2 cut(s) 264, 309
Tru9I TTAA 2 cut(s) 264, 309
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 8 cut(s) 30, 47, 51, 69, 350, 420, 438, 456
TspRI CASTG 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 3 cut(s) 59, 83, 443
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.