Rroxscaffold_1G00042980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000697
Physical Location & Seq
Reverse (-)
61305168 .. 61305419
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042980.1

Sequence Viewer

Length: 252 bp
ATGGAAGATGAAAATCTTGAACTACTTTCTCAAAGCCAACAACAACAAAGAGCGGAAGCTAATGCTTGGAGAATTAGCATTGCTGATGCTATGTGGAATGATAGGCCGCGGAATGATGATAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGAGAATAATGAGGAACACATAAATGATGAGAATCAGCAGGTTTACGATGATAATGAGGGTGGAATGGAGGAGTATGCATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.76

Weight (kDa)

4.05

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 53, 107, 109
AclWI GGATC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 1 cut(s) 156
AoxI GGCC 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmsI GCATC 1 cut(s) 76
BsaBI GATNNNNATC 2 cut(s) 12, 195
BsaJI CCNNGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 78
Bse8I GATNNNNATC 2 cut(s) 12, 195
BseDI CCNNGG 1 cut(s) 107
BseJI GATNNNNATC 2 cut(s) 12, 195
BseMI GCAATG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 106
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 3 cut(s) 53, 107, 109
BspANI GGCC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstUI CGCG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 110
CviJI RGCY 3 cut(s) 36, 59, 106
CviKI_1 RGCY 3 cut(s) 36, 59, 106
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 244
FaiI YATR 3 cut(s) 92, 185, 240
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 106
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 17, 131, 152
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 242
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 188
LweI GCATC 1 cut(s) 76
MalI GATC 1 cut(s) 150
MbiI CCGCTC 1 cut(s) 53
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 72
MnlI CCTC 5 cut(s) 127, 139, 169, 214, 226
Mph1103I ATGCAT 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 109
MvnI CGCG 1 cut(s) 109
NdeII GATC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 244
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 186
SacII CCGCGG 1 cut(s) 110
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 148
SetI ASST 2 cut(s) 61, 207
SfaNI GCATC 1 cut(s) 76
Sfr303I CCGCGG 1 cut(s) 110
SgeI CNNG 6 cut(s) 29, 78, 120, 143, 164, 215
SgrBI CCGCGG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 1 cut(s) 72
SsiI CCGC 3 cut(s) 53, 107, 109
TasI AATT 1 cut(s) 72
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.