RchiOBHm_Chr5g0054101
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000697
Physical Location & Seq
Forward (+)
56554443 .. 56555055
613 bp
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UTR
Exon/CDS
Intron
PRQ33132

Sequence Viewer

Length: 189 bp
ATGCAATTGAGTTATTCAATCTTCGACATGCTAGCTTCCTTGAGGAATGTTATTGAGAGAATATTTGGAATATTTAAGTCGCGTTTCACAATCTTCAAATCACCACCACCATTTCCATATAAGACACAAGTAGAACTAGTTTTGGCTTGTGCAAGAATGCACAATTTTCTTCGACAGGAATGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

62

Amino Acids

7.39

Weight (kDa)

9.89

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
AccII CGCG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 18, 97
AhlI ACTAGT 1 cut(s) 136
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 93
AsuNHI GCTAGC 1 cut(s) 31
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 2 cut(s) 32, 137
BmtI GCTAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 82
BsmI GAATGC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 82
BspOI GCTAGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 33
BstFNI CGCG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 31
BstUI CGCG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 33
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 35, 146
CviKI_1 RGCY 2 cut(s) 35, 146
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
FaeI CATG 1 cut(s) 31
FaiI YATR 3 cut(s) 29, 118, 120
FatI CATG 1 cut(s) 27
FspBI CTAG 2 cut(s) 32, 137
FspEI CC 9 cut(s) 28, 51, 52, 117, 120, 123, 128, 129, 161
Hin1II CATG 1 cut(s) 31
HphI GGTGA 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 4, 152, 160
Hsp92II CATG 1 cut(s) 31
LpnPI CCDG 1 cut(s) 161
MaeI CTAG 2 cut(s) 32, 137
MboII GAAGA 3 cut(s) 13, 85, 161
MfeI CAATTG 1 cut(s) 5
MluCI AATT 2 cut(s) 5, 163
MnlI CCTC 1 cut(s) 36
MseI TTAA 2 cut(s) 75, 187
MunI CAATTG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 162
MvnI CGCG 1 cut(s) 82
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 31
NspI RCATGY 1 cut(s) 31
PctI GAATGC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 75, 187
SetI ASST 1 cut(s) 37
SgeI CNNG 8 cut(s) 40, 44, 52, 93, 140, 149, 159, 165
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 2 cut(s) 5, 163
SspI AATATT 2 cut(s) 63, 72
SspMI CTAG 2 cut(s) 32, 137
TaqI TCGA 2 cut(s) 24, 172
TasI AATT 2 cut(s) 5, 163
Tru1I TTAA 2 cut(s) 75, 187
Tru9I TTAA 2 cut(s) 75, 187
XceI RCATGY 1 cut(s) 31
XspI CTAG 2 cut(s) 32, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.