Rroxscaffold_6G00409810
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000697
Physical Location & Seq
Forward (+)
32309220 .. 32312285
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409810.1

Sequence Viewer

Length: 333 bp
ATGACTTCGTACATAGAATGTCGTGAGGATGAATTTCCTGTTGAACCAGAAAATGATTCATCATCTTCATCCTATCTAGATATGGAAGATGAGAATCTTGAACTACTTTCTCAAAGTCAACAACGACAAAGAGCGGAGGCTAATGCTTGGAGGCTTACTATTGTTGAAGCTATGTGGGAAGATAGACTGCGAAATGATGATAATGAAAGTCAAGAGAATAACAATAATACTCAAGACAATGAGAATGAGAATAATGAGGAACATATGGATGACGGGGAACAAGAAGGTTATGATGATAATGAGGTTGGAATGGATAAGTATGCAGCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

110

Amino Acids

12.95

Weight (kDa)

4.05

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 44, 101, 167
AluBI AGCT 2 cut(s) 170, 326
AluI AGCT 2 cut(s) 170, 326
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 32
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 93
BseGI GGATG 3 cut(s) 34, 68, 274
BseJI GATNNNNATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 134
BstF5I GGATG 3 cut(s) 34, 68, 274
BtsCI GGATG 3 cut(s) 34, 68, 274
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 4 cut(s) 140, 154, 170, 326
CviKI_1 RGCY 4 cut(s) 140, 154, 170, 326
CviQI GTAC 1 cut(s) 10
FaiI YATR 7 cut(s) 14, 83, 173, 264, 266, 291, 321
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 41, 55, 281
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 2 cut(s) 56, 94
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 5 cut(s) 23, 77, 98, 212, 233
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 323
LpnPI CCDG 2 cut(s) 51, 60
MaeI CTAG 1 cut(s) 77
MbiI CCGCTC 1 cut(s) 134
MboII GAAGA 3 cut(s) 57, 98, 191
MluCI AATT 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 5 cut(s) 19, 130, 144, 250, 295
MslI CAYNNNNRTG 1 cut(s) 267
NdeI CATATG 1 cut(s) 264
PfeI GAWTC 2 cut(s) 56, 94
PkrI GCNGC 1 cut(s) 325
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 267
SatI GCNGC 1 cut(s) 324
SetI ASST 4 cut(s) 172, 289, 306, 328
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 77
TasI AATT 1 cut(s) 32
TfiI GAWTC 2 cut(s) 56, 94
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 45, 48, 57, 219
XapI RAATTY 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 76
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.