Rmu_sc0003642.1_g000003
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003642.1
Physical Location & Seq
Reverse (-)
13614 .. 16102
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003642.1_g000003.1.cds

Sequence Viewer

Length: 1434 bp
atgtattctgagcttatgcgtcatagctccggctttgggtgggaccccatcatgaagagaatcattgctagtgatgaagtatgggaagattacttcaaggcacacccaaaacatagaagccttcgcaaccagactttcatagactatgaggatttgaaaattgcagtggcaaatggaattgcaacaggaaagttttcaattagcctgggcgatgatactgatgcaaccacatacatggattgtataggagcaattgatgggacacatattccagcaatggtgaagggacctgagataagcgcataccgaaaccgatatggaaaaacatcacaaaatgtattggctgctactaactttgacttggaattcatttatgtgctcagtgggtgggaaggttcagctcatgattcaagagtattaaatgatgcattgacaaggagaaatgatggaaaaacatcacaaaatgtattggctgctactaactttgacttggaattcatttatgtgctcagtgggtgggaaggttcagctcatgattcaagagtactaaatgatgcattgacaaggagaaatgggcttaagttacctccaggtaaatttttattggtggatgctggatttgcaaatagacatggtttcttagcacctattagaggcgtccgctatcatctcaaagagttcagtggtcatggtcgccaccctgaaaatgcgcgtgagttattcaatcttcaaatggtgaagggacctgagataagcgcataccgaaaccgatatggaaaaacatcacaaaatgtattggctgctactaactttgacttggaattcatttatgtgctcagtgggtgggaaggttcagctcatgattcaagagtactaaatgatgcattgacaaggagaaatgggcttaagttacctccaggtaaatttttattggtggatgctggatttgcaaatagacatggtttcttagcacctattagaggcgtccgctatcatctcaaagagttcagtggtcatggtcgccaccctgaaaatgcgcgtgagttattcaatcttcatcatgcttccttgagaaacgtagttgagagaatatttggagtacttaaatcctgtttcacaatattcaagactgcacctccattcccatttaagacacaagcagagctagtgttggcttgtgcaggatttcacaactttcttcgtaaggaatgtcgttctgatttatttcctgttgaatcggaggatgaagaagattatgaacatgaagaagatccggaagatgaattccaaacccaagaccaacaaagagaggaagctaatgattggagaatggagatagctaatcatatgtggagagatgcaagacctgcacctgatcctgaacccaatcctccacccgttgttgaaggcaacaatgcagcagaacaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

477

Amino Acids

54.02

Weight (kDa)

5.93

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1375
AccII CGCG 2 cut(s) 712, 1039
AccIII TCCGGA 1 cut(s) 1273
AciI CCGC 2 cut(s) 661, 988
AclWI GGATC 2 cut(s) 1265, 1370
AcsI RAATTY 6 cut(s) 365, 494, 596, 821, 923, 1283
AcyI GRCGYC 2 cut(s) 657, 984
AfaI GTAC 3 cut(s) 546, 873, 1101
AfiI CCNNNNNNNGG 3 cut(s) 36, 653, 980
AflII CTTAAG 2 cut(s) 578, 905
AjnI CCWGG 3 cut(s) 204, 589, 916
AluBI AGCT 8 cut(s) 13, 27, 401, 530, 857, 1165, 1316, 1340
AluI AGCT 8 cut(s) 13, 27, 401, 530, 857, 1165, 1316, 1340
Alw21I GWGCWC 3 cut(s) 381, 510, 837
AlwI GGATC 2 cut(s) 1265, 1370
Aor13HI TCCGGA 1 cut(s) 1273
ApeKI GCWGC 4 cut(s) 344, 473, 800, 1418
ApoI RAATTY 6 cut(s) 365, 494, 596, 821, 923, 1283
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 4 cut(s) 302, 712, 758, 1039
AspS9I GGNCC 3 cut(s) 43, 287, 743
AsuHPI GGTGA 2 cut(s) 292, 748
AvaII GGWCC 3 cut(s) 43, 287, 743
Bbv12I GWGCWC 3 cut(s) 381, 510, 837
BbvI GCAGC 4 cut(s) 331, 460, 787, 1430
BccI CCATC 3 cut(s) 56, 251, 440
BciT130I CCWGG 3 cut(s) 206, 591, 918
BfaI CTAG 2 cut(s) 69, 1166
BfrI CTTAAG 2 cut(s) 578, 905
BfuAI ACCTGC 1 cut(s) 1375
BisI GCNGC 4 cut(s) 345, 474, 801, 1419
BlsI GCNGC 4 cut(s) 346, 475, 802, 1420
BmcAI AGTACT 3 cut(s) 546, 873, 1101
Bme1390I CCNGG 3 cut(s) 206, 591, 918
Bme18I GGWCC 3 cut(s) 43, 287, 743
BmgT120I GGNCC 3 cut(s) 43, 287, 743
BmiI GGNNCC 4 cut(s) 44, 45, 288, 744
BmrFI CCNGG 3 cut(s) 206, 591, 918
BmsI GCATC 7 cut(s) 211, 415, 544, 601, 871, 928, 1348
BpmI CTGGAG 2 cut(s) 573, 900
BpuEI CTTGAG 1 cut(s) 1090
BsaHI GRCGYC 2 cut(s) 657, 984
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 1273
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 653, 980
Bse3DI GCAATG 2 cut(s) 63, 282
BseAI TCCGGA 1 cut(s) 1273
BseBI CCWGG 3 cut(s) 206, 591, 918
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 3 cut(s) 616, 943, 1249
BseLI CCNNNNNNNGG 3 cut(s) 36, 653, 980
BseMI GCAATG 2 cut(s) 63, 282
BseMII CTCAG 5 cut(s) 282, 394, 523, 738, 850
BseXI GCAGC 4 cut(s) 331, 460, 787, 1430
BsgI GTGCAG 3 cut(s) 1116, 1200, 1353
Bsh1236I CGCG 2 cut(s) 712, 1039
BsiHKAI GWGCWC 3 cut(s) 381, 510, 837
BsiSI CCGG 2 cut(s) 30, 1274
BslFI GGGAC 4 cut(s) 56, 274, 300, 756
BslI CCNNNNNNNGG 3 cut(s) 36, 653, 980
BsmFI GGGAC 4 cut(s) 56, 274, 300, 756
Bsp1286I GDGCHC 3 cut(s) 381, 510, 837
Bsp13I TCCGGA 1 cut(s) 1273
Bsp143I GATC 2 cut(s) 1270, 1375
BspACI CCGC 2 cut(s) 661, 988
BspCNI CTCAG 5 cut(s) 283, 393, 522, 739, 849
BspEI TCCGGA 1 cut(s) 1273
BspFNI CGCG 2 cut(s) 712, 1039
BspHI TCATGA 5 cut(s) 51, 403, 532, 859, 1430
BspLI GGNNCC 4 cut(s) 44, 45, 288, 744
BspMI ACCTGC 1 cut(s) 1375
BspPI GGATC 2 cut(s) 1265, 1370
BspTI CTTAAG 2 cut(s) 578, 905
BsrDI GCAATG 2 cut(s) 63, 282
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 1270, 1375
BssNI GRCGYC 2 cut(s) 657, 984
Bst2UI CCWGG 3 cut(s) 206, 591, 918
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 2 cut(s) 657, 984
BstAFI CTTAAG 2 cut(s) 578, 905
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstDEI CTNAG 8 cut(s) 9, 291, 380, 509, 640, 747, 836, 967
BstENI CCTNNNNNAGG 2 cut(s) 651, 978
BstF5I GGATG 3 cut(s) 616, 943, 1249
BstFNI CGCG 2 cut(s) 712, 1039
BstHHI GCGC 4 cut(s) 302, 712, 758, 1039
BstKTI GATC 2 cut(s) 1273, 1378
BstMBI GATC 2 cut(s) 1270, 1375
BstMWI GCNNNNNNNGC 3 cut(s) 620, 947, 1367
BstNI CCWGG 3 cut(s) 206, 591, 918
BstSCI CCNGG 3 cut(s) 204, 589, 916
BstUI CGCG 2 cut(s) 712, 1039
BstV1I GCAGC 4 cut(s) 331, 460, 787, 1430
BstX2I RGATCY 1 cut(s) 1270
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 1270
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 616, 943, 1249
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 6 cut(s) 171, 388, 517, 688, 844, 1015
BveI ACCTGC 1 cut(s) 1375
CciI TCATGA 5 cut(s) 51, 403, 532, 859, 1430
CfoI GCGC 4 cut(s) 302, 712, 758, 1039
Cfr13I GGNCC 3 cut(s) 43, 287, 743
CseI GACGC 3 cut(s) 8, 646, 973
Csp6I GTAC 3 cut(s) 545, 872, 1100
CviQI GTAC 3 cut(s) 545, 872, 1100
DdeI CTNAG 8 cut(s) 9, 291, 380, 509, 640, 747, 836, 967
DpnI GATC 2 cut(s) 1272, 1377
DpnII GATC 2 cut(s) 1270, 1375
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 3 cut(s) 43, 287, 743
EcoNI CCTNNNNNAGG 2 cut(s) 651, 978
EcoO109I RGGNCCY 3 cut(s) 43, 287, 743
EcoRI GAATTC 4 cut(s) 365, 494, 821, 1283
EcoRII CCWGG 3 cut(s) 204, 589, 916
EcoT22I ATGCAT 3 cut(s) 430, 559, 886
FaqI GGGAC 4 cut(s) 56, 274, 300, 756
FauNDI CATATG 1 cut(s) 1347
Fnu4HI GCNGC 4 cut(s) 345, 474, 801, 1419
FokI GGATG 3 cut(s) 623, 950, 1256
Fsp4HI GCNGC 4 cut(s) 345, 474, 801, 1419
FspBI CTAG 2 cut(s) 69, 1166
GlaI GCGC 4 cut(s) 301, 711, 757, 1038
GluI GCNGC 4 cut(s) 345, 474, 801, 1419
GsuI CTGGAG 2 cut(s) 573, 900
HapII CCGG 2 cut(s) 30, 1274
HgaI GACGC 3 cut(s) 8, 646, 973
HhaI GCGC 4 cut(s) 302, 712, 758, 1039
Hin1I GRCGYC 2 cut(s) 657, 984
Hin6I GCGC 4 cut(s) 300, 710, 756, 1037
HinP1I GCGC 4 cut(s) 300, 710, 756, 1037
HinfI GANTC 5 cut(s) 60, 407, 536, 863, 1235
HpaII CCGG 2 cut(s) 30, 1274
HphI GGTGA 2 cut(s) 292, 748
Hpy188I TCNGA 3 cut(s) 10, 1219, 1240
HpyAV CCTTC 7 cut(s) 131, 277, 386, 515, 733, 842, 1400
HpyCH4IV ACGT 1 cut(s) 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 947, 1367
HpyF3I CTNAG 8 cut(s) 9, 291, 380, 509, 640, 747, 836, 967
HpySE526I ACGT 1 cut(s) 1077
Hsp92I GRCGYC 2 cut(s) 657, 984
HspAI GCGC 4 cut(s) 300, 710, 756, 1037
KflI GGGWCCC 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 1273
Kzo9I GATC 2 cut(s) 1270, 1375
LmnI GCTCC 2 cut(s) 32, 248
Lsp1109I GCAGC 4 cut(s) 331, 460, 787, 1430
LweI GCATC 7 cut(s) 211, 415, 544, 601, 871, 928, 1348
MaeI CTAG 2 cut(s) 69, 1166
MaeII ACGT 1 cut(s) 1077
MaeIII GTNAC 2 cut(s) 582, 909
MalI GATC 2 cut(s) 1272, 1377
MboI GATC 2 cut(s) 1270, 1375
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 1270
MhlI GDGCHC 3 cut(s) 381, 510, 837
MnlI CCTC 9 cut(s) 142, 597, 647, 924, 974, 1146, 1234, 1303, 1401
Mph1103I ATGCAT 3 cut(s) 430, 559, 886
MroI TCCGGA 1 cut(s) 1273
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 5 cut(s) 419, 579, 906, 1104, 1149
MslI CAYNNNNRTG 4 cut(s) 233, 374, 503, 830
MspCI CTTAAG 2 cut(s) 578, 905
MspI CCGG 2 cut(s) 30, 1274
MspR9I CCNGG 3 cut(s) 206, 591, 918
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 3 cut(s) 206, 591, 918
MvnI CGCG 2 cut(s) 712, 1039
MwoI GCNNNNNNNGC 3 cut(s) 620, 947, 1367
NdeI CATATG 1 cut(s) 1347
NdeII GATC 2 cut(s) 1270, 1375
NlaIV GGNNCC 4 cut(s) 44, 45, 288, 744
NsiI ATGCAT 3 cut(s) 430, 559, 886
PagI TCATGA 5 cut(s) 51, 403, 532, 859, 1430
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 5 cut(s) 60, 407, 536, 863, 1235
PkrI GCNGC 4 cut(s) 346, 475, 802, 1420
PpuMI RGGWCCY 3 cut(s) 43, 287, 743
Psp5II RGGWCCY 3 cut(s) 43, 287, 743
Psp6I CCWGG 3 cut(s) 204, 589, 916
PspGI CCWGG 3 cut(s) 204, 589, 916
PspN4I GGNNCC 4 cut(s) 44, 45, 288, 744
PspPI GGNCC 3 cut(s) 43, 287, 743
PspPPI RGGWCCY 3 cut(s) 43, 287, 743
PsuI RGATCY 1 cut(s) 1270
RsaI GTAC 3 cut(s) 546, 873, 1101
RsaNI GTAC 3 cut(s) 545, 872, 1100
RseI CAYNNNNRTG 4 cut(s) 233, 374, 503, 830
SaqAI TTAA 5 cut(s) 419, 579, 906, 1104, 1149
SatI GCNGC 4 cut(s) 345, 474, 801, 1419
Sau3AI GATC 2 cut(s) 1270, 1375
Sau96I GGNCC 3 cut(s) 43, 287, 743
ScaI AGTACT 3 cut(s) 546, 873, 1101
ScrFI CCNGG 3 cut(s) 206, 591, 918
SduI GDGCHC 3 cut(s) 381, 510, 837
SfaNI GCATC 7 cut(s) 211, 415, 544, 601, 871, 928, 1348
SinI GGWCC 3 cut(s) 43, 287, 743
SmiMI CAYNNNNRTG 4 cut(s) 233, 374, 503, 830
SmlI CTYRAG 3 cut(s) 578, 905, 1069
SmoI CTYRAG 3 cut(s) 578, 905, 1069
SsiI CCGC 2 cut(s) 661, 988
SspI AATATT 2 cut(s) 1092, 1122
SspMI CTAG 2 cut(s) 69, 1166
StyD4I CCNGG 3 cut(s) 204, 589, 916
TaiI ACGT 1 cut(s) 1080
TatI WGTACW 3 cut(s) 544, 871, 1099
TfiI GAWTC 5 cut(s) 60, 407, 536, 863, 1235
Tru1I TTAA 5 cut(s) 419, 579, 906, 1104, 1149
Tru9I TTAA 5 cut(s) 419, 579, 906, 1104, 1149
TscAI CASTG 6 cut(s) 171, 388, 517, 688, 844, 1015
TseI GCWGC 4 cut(s) 344, 473, 800, 1418
TspRI CASTG 6 cut(s) 171, 388, 517, 688, 844, 1015
Vha464I CTTAAG 2 cut(s) 578, 905
VpaK11BI GGWCC 3 cut(s) 43, 287, 743
XagI CCTNNNNNAGG 2 cut(s) 651, 978
XapI RAATTY 6 cut(s) 365, 494, 596, 821, 923, 1283
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 69, 1166
ZrmI AGTACT 3 cut(s) 546, 873, 1101
Zsp2I ATGCAT 3 cut(s) 430, 559, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.