Rroxscaffold_6G00401310

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000697
Physical Location & Seq
Reverse (-)
23652589 .. 23653829
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401310.1

Sequence Viewer

Length: 285 bp
ATGTTTCCTAGCATAGGAAAAGCATGTCTAGACACTAGTCAAAACTTCAACAAAGTTTTAAAGGCCTTGAACACTATAGCACCACAAATGATGGTCAAACTTGGAGGTGTGCCCTCTAAAATTAGGGAAAGTACAAGGCCGCGGAATGATGATAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGAGAATAATGAGGAACACATAAATGATGAGAATCAGCAGGTTTATGATGATAATGAGGGTGGAATGGAGGAGTATGCATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

4.17

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 140, 142
AclWI GGATC 1 cut(s) 189
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 49, 70
AhlI ACTAGT 1 cut(s) 35
AlwI GGATC 1 cut(s) 189
AoxI GGCC 2 cut(s) 63, 137
BaeGI GKGCMC 1 cut(s) 114
BccI CCATC 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 3 cut(s) 9, 29, 36
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BoxI GACNNNNGTC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 140
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 65, 139
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 2 cut(s) 65, 139
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 140, 142
BspANI GGCC 2 cut(s) 65, 139
BspFNI CGCG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 27
BstPAI GACNNNNGTC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 65, 139
BtgI CCRYGG 1 cut(s) 140
BveI ACCTGC 1 cut(s) 226
Cfr42I CCGCGG 1 cut(s) 143
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 24
CviJI RGCY 2 cut(s) 65, 139
CviKI_1 RGCY 2 cut(s) 65, 139
CviQI GTAC 1 cut(s) 132
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 1 cut(s) 27
FaiI YATR 6 cut(s) 14, 25, 77, 218, 243, 273
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 3 cut(s) 9, 29, 36
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 65, 139
Hin1II CATG 1 cut(s) 27
HinfI GANTC 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 29, 164, 185
HpyCH4V TGCA 1 cut(s) 275
Hsp92II CATG 1 cut(s) 27
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 1 cut(s) 221
MaeI CTAG 3 cut(s) 9, 29, 36
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 120
MnlI CCTC 7 cut(s) 98, 124, 160, 172, 202, 247, 259
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 142
MvnI CGCG 1 cut(s) 142
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 27
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 141
PshAI GACNNNNGTC 1 cut(s) 36
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 219
SacII CCGCGG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 114
SetI ASST 2 cut(s) 109, 240
SfcI CTRYAG 1 cut(s) 75
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 219
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 1 cut(s) 120
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 2 cut(s) 140, 142
SspMI CTAG 3 cut(s) 9, 29, 36
StuI AGGCCT 1 cut(s) 65
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 131
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 27
XspI CTAG 3 cut(s) 9, 29, 36
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.