MD00G1059100.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0009294
Physical Location & Seq
Reverse (-)
10823977 .. 10826519
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1059100.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGTGAGTTCAATTCTACCGATGGGGCGAATTGGGAGCGAAGAAGACGATGCAATTTGTCCGGCTTGGCTAAAACCAATGCTAAGAGCACACTACTTCGTCCATTGTGAGATTCACGGCGATTCCAACAAGAGCGAATGCAACATGTTCTGCTTGGATTGCATGGGGGATGCTATCTGCCCTTACTGTTTGATCCATCACAAAGATCATCGCGTTGTCCAGATAAGACGGTCCTCATACCATGATGTGGTCAGAGTGAATGAGATTCAGAAGTACATAGATATATCTTGCGTGCAGACGTACATCATCAACAGCGCAAAGATTGTGTTTCTGAATGAGAGGCCACAGCCAAGGCCCGGAAAGGGAGTCACCAACACTTGTGAGATTTGCTGCCGAAGCCTCCTCGACTCCTTTCGGTTCTGCTCTTTGGGTTGCAAGCTTGGAGGAATAATGCGCGGTGACCGGGAGCTCACATTTGCAGTGATGAGAACAAAGCACAGCAGGGATGGTTTCTATGGCGGGTCAGAATCAGATGAATCAACAACTCCAAAGAAGATAACGAAGACAATGCATATGTTCAGCCGTCTGATGAATGAGAATGCACTTAATTACGAGCGTGGGACTCATGTGGGGGAGAGAACTACCTCAAGTTCGGGTGATGAGGAGGGCACTGCCAATCTTTCTCCATCCACTCCTCCCCTTTACAATCACCACAATGCCAGAAGACGTAAGGGTATACCTCATCGGGCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

253

Amino Acids

28.54

Weight (kDa)

8.55

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 76 - 147 2e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 213, 456
AciI CCGC 2 cut(s) 456, 519
AclWI GGATC 1 cut(s) 187
AfaI GTAC 2 cut(s) 275, 302
AfiI CCNNNNNNNGG 3 cut(s) 247, 356, 362
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 439, 469
AluI AGCT 2 cut(s) 439, 469
Alw21I GWGCWC 2 cut(s) 91, 471
AlwI GGATC 1 cut(s) 187
AoxI GGCC 2 cut(s) 341, 353
ApeKI GCWGC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 317, 456
AspS9I GGNCC 2 cut(s) 231, 354
AsuC2I CCSGG 2 cut(s) 357, 464
AsuHPI GGTGA 5 cut(s) 16, 361, 470, 668, 701
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 671, 751
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 3 cut(s) 51, 569, 730
Bbv12I GWGCWC 2 cut(s) 91, 471
BbvI GCAGC 1 cut(s) 377
BccI CCATC 4 cut(s) 16, 204, 500, 694
BceAI ACGGC 2 cut(s) 133, 567
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BcnI CCSGG 2 cut(s) 357, 464
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 357, 464
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 231, 354
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 2 cut(s) 357, 464
BmsI GCATC 2 cut(s) 40, 160
BpiI GAAGAC 3 cut(s) 51, 569, 730
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 2 cut(s) 357, 464
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 356, 362
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 175, 511, 686
BseLI CCNNNNNNNGG 3 cut(s) 247, 356, 362
BseRI GAGGAG 3 cut(s) 392, 677, 684
BseSI GKGCMC 2 cut(s) 671, 751
BseXI GCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 213, 456
BshFI GGCC 2 cut(s) 343, 355
BshNI GGYRCC 1 cut(s) 748
BsiHKAI GWGCWC 2 cut(s) 91, 471
BsiSI CCGG 3 cut(s) 62, 357, 463
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 3 cut(s) 247, 356, 362
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 2 cut(s) 143, 604
BsnI GGCC 2 cut(s) 343, 355
Bsp1286I GDGCHC 4 cut(s) 91, 471, 671, 751
Bsp143I GATC 2 cut(s) 192, 205
BspACI CCGC 2 cut(s) 456, 519
BspANI GGCC 2 cut(s) 343, 355
BspFNI CGCG 2 cut(s) 213, 456
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 748
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 192, 205
BssNAI GTATAC 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 188, 231
BstC8I GCNNGC 2 cut(s) 293, 437
BstDEI CTNAG 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 3 cut(s) 175, 511, 686
BstFNI CGCG 2 cut(s) 213, 456
BstHHI GCGC 2 cut(s) 317, 456
BstKTI GATC 2 cut(s) 195, 208
BstMBI GATC 2 cut(s) 192, 205
BstMWI GCNNNNNNNGC 2 cut(s) 159, 396
BstNSI RCATGY 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 355, 462
BstSLI GKGCMC 2 cut(s) 671, 751
BstUI CGCG 2 cut(s) 213, 456
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 3 cut(s) 51, 569, 730
BstZ17I GTATAC 1 cut(s) 737
BsuRI GGCC 2 cut(s) 343, 355
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 175, 511, 686
BtsI GCAGTG 2 cut(s) 486, 669
BtsIMutI CAGTG 2 cut(s) 486, 669
Cac8I GCNNGC 2 cut(s) 293, 437
CfoI GCGC 2 cut(s) 317, 456
Cfr13I GGNCC 2 cut(s) 231, 354
Csp6I GTAC 2 cut(s) 274, 301
CviAII CATG 4 cut(s) 145, 163, 242, 626
CviJI RGCY 9 cut(s) 65, 70, 343, 349, 355, 399, 439, 469, 582
CviKI_1 RGCY 9 cut(s) 65, 70, 343, 349, 355, 399, 439, 469, 582
CviQI GTAC 2 cut(s) 274, 301
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 194, 207
DpnII GATC 2 cut(s) 192, 205
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 469
Eco91I GGTNACC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 469
EcoO65I GGTNACC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 148, 166, 245, 629
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 144, 162, 241, 625
FauI CCCGC 1 cut(s) 512
FauNDI CATATG 1 cut(s) 573
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 3 cut(s) 182, 518, 673
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 391
GlaI GCGC 2 cut(s) 316, 455
GluI GCNGC 1 cut(s) 391
HaeIII GGCC 2 cut(s) 343, 355
HapII CCGG 3 cut(s) 62, 357, 463
HhaI GCGC 2 cut(s) 317, 456
Hin1II CATG 4 cut(s) 148, 166, 245, 629
Hin6I GCGC 2 cut(s) 315, 454
HinP1I GCGC 2 cut(s) 315, 454
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 8 cut(s) 112, 122, 265, 366, 407, 527, 536, 622
HpaII CCGG 3 cut(s) 62, 357, 463
HphI GGTGA 5 cut(s) 16, 361, 470, 668, 701
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 6 cut(s) 254, 270, 333, 526, 532, 588
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 188, 231
HpyCH4IV ACGT 2 cut(s) 299, 727
HpyCH4V TGCA 8 cut(s) 53, 141, 162, 295, 435, 479, 571, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 396
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 299, 727
Hsp92II CATG 4 cut(s) 148, 166, 245, 629
HspAI GCGC 2 cut(s) 315, 454
Kzo9I GATC 2 cut(s) 192, 205
LmnI GCTCC 2 cut(s) 36, 466
LpnPI CCDG 6 cut(s) 75, 233, 370, 476, 487, 733
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 40, 160
MaeII ACGT 2 cut(s) 299, 727
MaeIII GTNAC 2 cut(s) 367, 458
MalI GATC 2 cut(s) 194, 207
MboI GATC 2 cut(s) 192, 205
MboII GAAGA 5 cut(s) 53, 56, 565, 574, 735
MhlI GDGCHC 4 cut(s) 91, 471, 671, 751
MluCI AATT 4 cut(s) 12, 30, 54, 607
MlyI GAGTC 3 cut(s) 375, 401, 616
MmeI TCCRAC 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 714
MspI CCGG 3 cut(s) 62, 357, 463
MspR9I CCNGG 2 cut(s) 357, 464
Mva1269I GAATGC 2 cut(s) 143, 604
MvnI CGCG 2 cut(s) 213, 456
MwoI GCNNNNNNNGC 2 cut(s) 159, 396
NciI CCSGG 2 cut(s) 357, 464
NdeI CATATG 1 cut(s) 573
NdeII GATC 2 cut(s) 192, 205
NlaIII CATG 4 cut(s) 148, 166, 245, 629
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 2 cut(s) 367, 458
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PctI GAATGC 2 cut(s) 143, 604
PfeI GAWTC 5 cut(s) 112, 122, 265, 527, 536
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 3 cut(s) 374, 401, 616
PpsI GAGTC 3 cut(s) 374, 401, 616
PscI ACATGT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 231, 354
RsaI GTAC 2 cut(s) 275, 302
RsaNI GTAC 2 cut(s) 274, 301
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 2 cut(s) 192, 205
Sau96I GGNCC 2 cut(s) 231, 354
SchI GAGTC 3 cut(s) 375, 401, 616
ScrFI CCNGG 2 cut(s) 357, 464
SduI GDGCHC 4 cut(s) 91, 471, 671, 751
SetI ASST 6 cut(s) 302, 441, 471, 647, 730, 742
SfaNI GCATC 2 cut(s) 40, 160
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 4 cut(s) 12, 30, 54, 607
SsiI CCGC 2 cut(s) 456, 519
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 355, 462
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 188, 231
TaiI ACGT 2 cut(s) 302, 730
TaqI TCGA 1 cut(s) 405
TasI AATT 4 cut(s) 12, 30, 54, 607
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 5 cut(s) 112, 122, 265, 527, 536
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 2 cut(s) 486, 676
TseFI GTSAC 2 cut(s) 367, 458
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 2 cut(s) 367, 458
TspDTI ATGAA 2 cut(s) 549, 605
TspRI CASTG 2 cut(s) 486, 676
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 231
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.