Rmu_sc0010645.1_g000006

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010645.1
OG0009294
Physical Location & Seq
Forward (+)
25844 .. 29870
4027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010645.1_g000006.1.cds

Sequence Viewer

Length: 1128 bp
atgattgtaacaaggttgacaccattcttgagtagggccaactccttcctcattgaagctgccagtcaacatctcaatccaagtccaaaatcgacaggagttgagaacaaaatcaatcaccagcacactgatcggaatgaagaccgcgtcctcattacactgccgactgcggatgctacgccgtcggctgcttggagacgacctctgcaacagatcgatgtcaaaccctttcggcgcgctctaccaaaacatgaaccggcgacaacccaattcgatcgtctgatacctgcgatgggtgttccaccgcccatcaagaaactggacagctatcttgaacgagaactacaacagcagcagagtgcaaagattggggccgacttcaacagagatatggtgagttcgattgcgattggtcgaatggggaaggaagaggatgagaggactcctccctggttgaaaccaatgcttcgggcaaagtatttcaactcgtgttcgattcattgtgattccaacaagagtgaatgcaaccatttctgtttggattgtagaggccctgctttgtgcccttcctgtttgattcatcaccaaggtcatcattatgttcagataagaaggtcgtcctaccataatgtggtgagagtgagtgagattcagaggtacatagacatttcgtgcgtgcagacgtacatcattaacagtgcaaagattgtgtttctgaatgagaggccccagccgaggcctggaaaaggggttacctacacttgtgagatttgctgcagaagcctggtcgatgcctttaggttctgctcattgggttgcaagctcggaggtatggagcgtggtgaccacgacctttcatttacagtgaggtttccaaaagcaactcagatgaatcaaatgtataaccatataagggggtcagaatcagatgaatcaacaaccccaaagaagattgcaaagacaactcaaatgttcaaccgtttgatgatgggggaaggcaatgctacttcctctgatgatgaggccactgccaataatctctctccctccactcctcccctctacaatgatcgcaatgctggaagacgcagacgtaagggtatacctcatcgtgcacccttcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

375

Amino Acids

42.54

Weight (kDa)

9.34

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 631
AccI GTMKAC 1 cut(s) 1102
AccII CGCG 2 cut(s) 147, 237
AciI CCGC 3 cut(s) 145, 170, 305
AfaI GTAC 2 cut(s) 659, 686
AfiI CCNNNNNNNGG 6 cut(s) 293, 631, 735, 740, 746, 913
AgsI TTSAA 6 cut(s) 56, 335, 382, 457, 484, 976
AjnI CCWGG 3 cut(s) 449, 739, 783
AluBI AGCT 3 cut(s) 59, 327, 823
AluI AGCT 3 cut(s) 59, 327, 823
Alw21I GWGCWC 1 cut(s) 1117
Alw26I GTCTC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 1113
AoxI GGCC 6 cut(s) 36, 372, 550, 725, 737, 1023
ApaLI GTGCAC 1 cut(s) 1113
ApeKI GCWGC 4 cut(s) 59, 188, 352, 774
AspLEI GCGC 2 cut(s) 237, 239
AspS9I GGNCC 4 cut(s) 36, 372, 551, 726
AsuHPI GGTGA 5 cut(s) 110, 406, 575, 646, 854
BaeGI GKGCMC 2 cut(s) 566, 1117
BauI CACGAG 1 cut(s) 487
BbsI GAAGAC 2 cut(s) 147, 1090
Bbv12I GWGCWC 1 cut(s) 1117
BbvI GCAGC 4 cut(s) 46, 175, 364, 761
BccI CCATC 3 cut(s) 286, 317, 982
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 3 cut(s) 451, 741, 785
BcoDI GTCTC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 775
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 4 cut(s) 60, 189, 353, 775
BlsI GCNGC 4 cut(s) 61, 190, 354, 776
Bme1390I CCNGG 3 cut(s) 451, 741, 785
BmgT120I GGNCC 4 cut(s) 36, 372, 551, 726
BmiI GGNNCC 2 cut(s) 373, 728
BmrFI CCNGG 3 cut(s) 451, 741, 785
BmsI GCATC 2 cut(s) 163, 781
BpiI GAAGAC 2 cut(s) 147, 1090
BplI GAGNNNNNCTC 4 cut(s) 187, 219, 430, 462
BpuEI CTTGAG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 449, 586, 734
Bsc4I CCNNNNNNNGG 6 cut(s) 293, 631, 735, 740, 746, 913
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 63, 324
Bse3DI GCAATG 2 cut(s) 1006, 1081
BseBI CCWGG 3 cut(s) 451, 741, 785
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 449, 586, 734
BseGI GGATG 2 cut(s) 178, 439
BseLI CCNNNNNNNGG 6 cut(s) 293, 631, 735, 740, 746, 913
BseMI GCAATG 2 cut(s) 1006, 1081
BseMII CTCAG 1 cut(s) 899
BseNI ACTGG 2 cut(s) 63, 324
BsePI GCGCGC 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 435, 1044
BseSI GKGCMC 2 cut(s) 566, 1117
BseXI GCAGC 4 cut(s) 46, 175, 364, 761
BseYI CCCAGC 1 cut(s) 729
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 147, 237
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 6 cut(s) 38, 374, 552, 727, 739, 1025
BshVI ATCGAT 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 1117
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 6 cut(s) 293, 631, 735, 740, 746, 913
BsmAI GTCTC 1 cut(s) 190
BsmBI CGTCTC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 6 cut(s) 38, 374, 552, 727, 739, 1025
Bsp1286I GDGCHC 2 cut(s) 566, 1117
Bsp143I GATC 4 cut(s) 130, 213, 274, 1069
BspACI CCGC 3 cut(s) 145, 170, 305
BspANI GGCC 6 cut(s) 38, 374, 552, 727, 739, 1025
BspCNI CTCAG 1 cut(s) 898
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 2 cut(s) 147, 237
BspLI GGNNCC 2 cut(s) 373, 728
BspMAI CTGCAG 1 cut(s) 779
BspMI ACCTGC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 1006, 1081
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 2 cut(s) 63, 324
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 449, 586, 734
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 4 cut(s) 130, 213, 274, 1069
BssNAI GTATAC 1 cut(s) 1103
BssSI CACGAG 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 586
Bst1107I GTATAC 1 cut(s) 1103
Bst2BI CACGAG 1 cut(s) 487
Bst2UI CCWGG 3 cut(s) 451, 741, 785
Bst4CI ACNGT 3 cut(s) 698, 865, 980
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 237, 677, 821
BstDEI CTNAG 1 cut(s) 885
BstEII GGTNACC 2 cut(s) 751, 842
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 2 cut(s) 178, 439
BstFNI CGCG 2 cut(s) 147, 237
BstHHI GCGC 2 cut(s) 237, 239
BstKTI GATC 4 cut(s) 133, 216, 277, 1072
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 4 cut(s) 130, 213, 274, 1069
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 780
BstNI CCWGG 3 cut(s) 451, 741, 785
BstPI GGTNACC 2 cut(s) 751, 842
BstSCI CCNGG 3 cut(s) 449, 739, 783
BstSFI CTRYAG 1 cut(s) 775
BstSLI GKGCMC 2 cut(s) 566, 1117
BstUI CGCG 2 cut(s) 147, 237
BstV1I GCAGC 4 cut(s) 46, 175, 364, 761
BstV2I GAAGAC 2 cut(s) 147, 1090
BstZ17I GTATAC 1 cut(s) 1103
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 6 cut(s) 38, 374, 552, 727, 739, 1025
BsuTUI ATCGAT 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 178, 439
BtsI GCAGTG 2 cut(s) 158, 1026
BtsIMutI CAGTG 5 cut(s) 126, 158, 703, 870, 1026
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 237, 677, 821
CfoI GCGC 2 cut(s) 237, 239
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 4 cut(s) 36, 372, 551, 726
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 2 cut(s) 136, 1095
Csp6I GTAC 2 cut(s) 658, 685
CviAII CATG 1 cut(s) 251
CviQI GTAC 2 cut(s) 658, 685
DdeI CTNAG 1 cut(s) 885
DpnI GATC 4 cut(s) 132, 215, 276, 1071
DpnII GATC 4 cut(s) 130, 213, 274, 1069
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 586
Eco147I AGGCCT 1 cut(s) 739
Eco91I GGTNACC 2 cut(s) 751, 842
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO109I RGGNCCY 2 cut(s) 551, 726
EcoO65I GGTNACC 2 cut(s) 751, 842
EcoRII CCWGG 3 cut(s) 449, 739, 783
EcoT14I CCWWGG 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 1 cut(s) 254
FatI CATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 1102
Fnu4HI GCNGC 4 cut(s) 60, 189, 353, 775
FokI GGATG 2 cut(s) 185, 446
Fsp4HI GCNGC 4 cut(s) 60, 189, 353, 775
GlaI GCGC 2 cut(s) 236, 238
GluI GCNGC 4 cut(s) 60, 189, 353, 775
GsaI CCCAGC 1 cut(s) 733
HaeIII GGCC 6 cut(s) 38, 374, 552, 727, 739, 1025
HapII CCGG 1 cut(s) 257
HgaI GACGC 2 cut(s) 136, 1095
HhaI GCGC 2 cut(s) 237, 239
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 2 cut(s) 235, 237
HinP1I GCGC 2 cut(s) 235, 237
HincII GTYRAC 2 cut(s) 18, 68
HindII GTYRAC 2 cut(s) 18, 68
HinfI GANTC 8 cut(s) 442, 496, 506, 577, 649, 892, 923, 932
HpaII CCGG 1 cut(s) 257
HphI GGTGA 5 cut(s) 110, 406, 575, 646, 854
Hpy166II GTNNAC 4 cut(s) 18, 68, 1103, 1115
Hpy188III TCNNGA 3 cut(s) 28, 313, 332
Hpy8I GTNNAC 4 cut(s) 18, 68, 1103, 1115
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 5 cut(s) 55, 418, 576, 606, 989
HpyCH4III ACNGT 3 cut(s) 698, 865, 980
HpyCH4IV ACGT 2 cut(s) 683, 1093
HpyCH4V TGCA 9 cut(s) 208, 362, 525, 679, 701, 777, 819, 956, 1115
HpyF10VI GCNNNNNNNGC 1 cut(s) 780
HpyF3I CTNAG 1 cut(s) 885
HpySE526I ACGT 2 cut(s) 683, 1093
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 2 cut(s) 235, 237
Kzo9I GATC 4 cut(s) 130, 213, 274, 1069
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 4 cut(s) 46, 175, 364, 761
LweI GCATC 2 cut(s) 163, 781
MaeII ACGT 2 cut(s) 683, 1093
MaeIII GTNAC 3 cut(s) 7, 751, 842
MalI GATC 4 cut(s) 132, 215, 276, 1071
MboI GATC 4 cut(s) 130, 213, 274, 1069
MboII GAAGA 4 cut(s) 152, 440, 961, 1095
MhlI GDGCHC 2 cut(s) 566, 1117
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 534
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 451, 741, 785
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 3 cut(s) 451, 741, 785
MvnI CGCG 2 cut(s) 147, 237
MwoI GCNNNNNNNGC 1 cut(s) 780
NdeII GATC 4 cut(s) 130, 213, 274, 1069
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 373, 728
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 1 cut(s) 842
PauI GCGCGC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 739
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 7 cut(s) 496, 506, 577, 649, 892, 923, 932
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 631
PkrI GCNGC 4 cut(s) 61, 190, 354, 776
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp6I CCWGG 3 cut(s) 449, 739, 783
PspEI GGTNACC 2 cut(s) 751, 842
PspFI CCCAGC 1 cut(s) 729
PspGI CCWGG 3 cut(s) 449, 739, 783
PspN4I GGNNCC 2 cut(s) 373, 728
PspPI GGNCC 4 cut(s) 36, 372, 551, 726
PsrI GAACNNNNNNTAC 2 cut(s) 327, 359
PstI CTGCAG 1 cut(s) 779
PsyI GACNNNGTC 1 cut(s) 146
PteI GCGCGC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 2 cut(s) 659, 686
RsaNI GTAC 2 cut(s) 658, 685
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 4 cut(s) 60, 189, 353, 775
Sau3AI GATC 4 cut(s) 130, 213, 274, 1069
Sau96I GGNCC 4 cut(s) 36, 372, 551, 726
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 3 cut(s) 451, 741, 785
SduI GDGCHC 2 cut(s) 566, 1117
SfaNI GCATC 2 cut(s) 163, 781
SfcI CTRYAG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 3 cut(s) 145, 170, 305
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 3 cut(s) 449, 739, 783
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 3 cut(s) 698, 865, 980
TaiI ACGT 2 cut(s) 686, 1096
TaqI TCGA 7 cut(s) 92, 216, 273, 401, 415, 494, 789
TasI AATT 1 cut(s) 269
TfiI GAWTC 7 cut(s) 496, 506, 577, 649, 892, 923, 932
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 5 cut(s) 133, 165, 703, 870, 1033
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 4 cut(s) 59, 188, 352, 774
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 7 cut(s) 153, 267, 488, 569, 846, 905, 945
TspRI CASTG 5 cut(s) 133, 165, 703, 870, 1033
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 631
VneI GTGCAC 1 cut(s) 1113
XagI CCTNNNNNAGG 1 cut(s) 744
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 737
XmiI GTMKAC 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.